data_Y3P
#
_chem_comp.id Y3P
_chem_comp.name "(~{Z})-2-oxidanylbut-2-enedioic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C4 H4 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-02-01
_chem_comp.pdbx_modified_date 2021-02-12
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 132.072
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code Y3P
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2FBW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y3P C1 C1 C 0 1 N N N 24.688 49.448 35.655 -1.877 -0.293 -0.007 C1 Y3P 1
Y3P O1 O1 O 0 1 N N N 25.813 49.492 36.180 -2.911 0.569 -0.057 O1 Y3P 2
Y3P C2 C2 C 0 1 N N N 24.120 50.785 35.113 -0.487 0.219 0.034 C2 Y3P 3
Y3P O2 O2 O 0 1 N N N 23.918 48.389 35.570 -2.084 -1.489 0.009 O2 Y3P 4
Y3P C3 C3 C 0 1 N N N 23.171 51.456 35.733 0.551 -0.646 0.084 C3 Y3P 5
Y3P O3 O3 O 0 1 N N N 24.732 51.271 33.965 -0.257 1.552 0.021 O3 Y3P 6
Y3P C4 C4 C 0 1 N N N 22.681 52.786 35.250 1.927 -0.145 0.006 C4 Y3P 7
Y3P O4 O4 O 0 1 N N N 23.274 53.265 34.238 2.139 1.052 0.004 O4 Y3P 8
Y3P O5 O5 O 0 1 N N N 21.760 53.382 35.883 2.957 -1.012 -0.063 O5 Y3P 9
Y3P H1 H1 H 0 1 N N N 26.039 48.633 36.517 -3.799 0.187 -0.082 H1 Y3P 10
Y3P HC3 H2 H 0 1 N N N 22.730 51.031 36.623 0.367 -1.705 0.182 HC3 Y3P 11
Y3P HO3 H3 H 0 1 N N N 24.372 52.124 33.751 0.679 1.789 -0.037 HO3 Y3P 12
Y3P H2 H4 H 0 1 N N N 21.594 54.226 35.481 3.846 -0.635 -0.113 H2 Y3P 13
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y3P O3 C2 SING N N 1
Y3P O4 C4 DOUB N N 2
Y3P C2 C1 SING N N 3
Y3P C2 C3 DOUB N Z 4
Y3P C4 C3 SING N N 5
Y3P C4 O5 SING N N 6
Y3P O2 C1 DOUB N N 7
Y3P C1 O1 SING N N 8
Y3P O1 H1 SING N N 9
Y3P C3 HC3 SING N N 10
Y3P O3 HO3 SING N N 11
Y3P O5 H2 SING N N 12
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y3P InChI InChI 1.03 "InChI=1S/C4H4O5/c5-2(4(8)9)1-3(6)7/h1,5H,(H,6,7)(H,8,9)/b2-1-"
Y3P InChIKey InChI 1.03 UWYVPFMHMJIBHE-UPHRSURJSA-N
Y3P SMILES_CANONICAL CACTVS 3.385 "OC(=O)/C=C(O)/C(O)=O"
Y3P SMILES CACTVS 3.385 "OC(=O)C=C(O)C(O)=O"
Y3P SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(=C(/C(=O)O)\O)\C(=O)O"
Y3P SMILES "OpenEye OEToolkits" 2.0.7 "C(=C(C(=O)O)O)C(=O)O"
#
_pdbx_chem_comp_identifier.comp_id Y3P
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(~{Z})-2-oxidanylbut-2-enedioic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y3P "Create component" 2021-02-01 RCSB
Y3P "Initial release" 2021-02-17 RCSB
##