data_Y3S # _chem_comp.id Y3S _chem_comp.name "(2R)-4-(3-fluoranylthiophen-2-yl)carbonyl-N-(4-methoxyphenyl)-2-methyl-piperazine-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H20 F N3 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-03 _chem_comp.pdbx_modified_date 2022-12-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 377.433 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y3S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8BW4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y3S N1 N1 N 0 1 N N N -20.237 17.005 27.963 2.266 0.465 -0.427 N1 Y3S 1 Y3S N3 N2 N 0 1 N N N -18.570 13.375 25.086 -2.269 -0.846 0.484 N3 Y3S 2 Y3S C4 C1 C 0 1 Y N N -21.928 17.526 29.616 4.488 -0.484 -0.425 C4 Y3S 3 Y3S C5 C2 C 0 1 Y N N -20.839 17.919 28.852 3.639 0.584 -0.170 C5 Y3S 4 Y3S C6 C3 C 0 1 N N N -20.286 15.632 28.048 1.649 -0.721 -0.256 C6 Y3S 5 Y3S C7 C4 C 0 1 N N N -18.769 15.589 26.062 -0.497 0.388 -0.651 C7 Y3S 6 Y3S C8 C5 C 0 1 N N N -18.896 14.774 24.811 -1.597 0.459 0.415 C8 Y3S 7 Y3S C10 C6 C 0 1 Y N N -16.485 13.334 23.710 -4.397 0.264 0.075 C10 Y3S 8 Y3S C13 C7 C 0 1 Y N N -15.753 14.603 23.959 -5.536 0.625 0.744 C13 Y3S 9 Y3S C15 C8 C 0 1 N N R -19.246 13.518 27.395 -0.358 -2.119 -0.340 C15 Y3S 10 Y3S C17 C9 C 0 1 Y N N -20.368 19.227 28.950 4.150 1.770 0.339 C17 Y3S 11 Y3S C1 C10 C 0 1 N N N -24.116 20.408 31.572 8.497 -0.203 0.298 C1 Y3S 12 Y3S C11 C11 C 0 1 Y N N -14.566 13.850 22.029 -5.411 2.391 -0.709 C11 Y3S 13 Y3S C12 C12 C 0 1 Y N N -14.772 14.826 22.936 -6.078 1.807 0.292 C12 Y3S 14 Y3S C14 C13 C 0 1 N N N -19.441 12.781 26.090 -1.459 -2.048 0.726 C14 Y3S 15 Y3S C16 C14 C 0 1 N N N -17.865 13.271 27.982 -0.980 -2.450 -1.699 C16 Y3S 16 Y3S C18 C15 C 0 1 Y N N -20.972 20.123 29.817 5.503 1.887 0.591 C18 Y3S 17 Y3S C2 C16 C 0 1 Y N N -22.057 19.716 30.582 6.351 0.820 0.336 C2 Y3S 18 Y3S C3 C17 C 0 1 Y N N -22.532 18.416 30.480 5.841 -0.366 -0.173 C3 Y3S 19 Y3S C9 C18 C 0 1 N N N -17.595 12.679 24.482 -3.605 -0.939 0.335 C9 Y3S 20 Y3S F1 F1 F 0 1 N N N -15.970 15.408 25.016 -6.072 -0.104 1.747 F1 Y3S 21 Y3S N2 N3 N 0 1 N N N -19.492 14.956 27.174 0.313 -0.814 -0.410 N2 Y3S 22 Y3S O1 O1 O 0 1 N N N -22.691 20.571 31.443 7.683 0.936 0.584 O1 Y3S 23 Y3S O2 O2 O 0 1 N N N -20.996 15.041 28.871 2.297 -1.707 0.038 O2 Y3S 24 Y3S O3 O3 O 0 1 N N N -17.563 11.451 24.566 -4.153 -2.023 0.417 O3 Y3S 25 Y3S S1 S1 S 0 1 Y N N -15.812 12.496 22.211 -4.044 1.472 -1.153 S1 Y3S 26 Y3S H1 H1 H 0 1 N N N -19.725 17.392 27.196 1.760 1.237 -0.724 H1 Y3S 27 Y3S H2 H2 H 0 1 N N N -22.305 16.517 29.534 4.091 -1.409 -0.817 H2 Y3S 28 Y3S H3 H3 H 0 1 N N N -17.705 15.678 26.328 -0.950 0.331 -1.641 H3 Y3S 29 Y3S H4 H4 H 0 1 N N N -19.187 16.591 25.884 0.135 1.274 -0.589 H4 Y3S 30 Y3S H5 H5 H 0 1 N N N -18.205 15.166 24.050 -2.320 1.229 0.144 H5 Y3S 31 Y3S H6 H6 H 0 1 N N N -19.928 14.840 24.437 -1.154 0.695 1.383 H6 Y3S 32 Y3S H7 H7 H 0 1 N N N -19.991 13.143 28.112 0.363 -2.891 -0.071 H7 Y3S 33 Y3S H8 H8 H 0 1 N N N -19.529 19.543 28.348 3.490 2.602 0.537 H8 Y3S 34 Y3S H9 H9 H 0 1 N N N -24.507 21.147 32.287 8.161 -1.050 0.896 H9 Y3S 35 Y3S H10 H10 H 0 1 N N N -24.592 20.558 30.592 8.417 -0.450 -0.761 H10 Y3S 36 Y3S H11 H11 H 0 1 N N N -24.337 19.394 31.936 9.536 0.023 0.541 H11 Y3S 37 Y3S H12 H12 H 0 1 N N N -13.776 13.858 21.292 -5.702 3.319 -1.179 H12 Y3S 38 Y3S H13 H13 H 0 1 N N N -14.214 15.750 22.894 -6.975 2.234 0.717 H13 Y3S 39 Y3S H14 H14 H 0 1 N N N -20.489 12.867 25.769 -1.006 -1.991 1.715 H14 Y3S 40 Y3S H15 H15 H 0 1 N N N -19.184 11.720 26.222 -2.090 -2.934 0.660 H15 Y3S 41 Y3S H16 H16 H 0 1 N N N -17.764 13.823 28.928 -1.701 -1.677 -1.966 H16 Y3S 42 Y3S H17 H17 H 0 1 N N N -17.734 12.195 28.170 -0.197 -2.494 -2.456 H17 Y3S 43 Y3S H18 H18 H 0 1 N N N -17.098 13.616 27.273 -1.485 -3.414 -1.642 H18 Y3S 44 Y3S H19 H19 H 0 1 N N N -20.600 21.134 29.898 5.900 2.810 0.987 H19 Y3S 45 Y3S H20 H20 H 0 1 N N N -23.375 18.101 31.077 6.501 -1.198 -0.367 H20 Y3S 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y3S C11 S1 SING Y N 1 Y3S C11 C12 DOUB Y N 2 Y3S S1 C10 SING Y N 3 Y3S C12 C13 SING Y N 4 Y3S C10 C13 DOUB Y N 5 Y3S C10 C9 SING N N 6 Y3S C13 F1 SING N N 7 Y3S C9 O3 DOUB N N 8 Y3S C9 N3 SING N N 9 Y3S C8 N3 SING N N 10 Y3S C8 C7 SING N N 11 Y3S N3 C14 SING N N 12 Y3S C7 N2 SING N N 13 Y3S C14 C15 SING N N 14 Y3S N2 C15 SING N N 15 Y3S N2 C6 SING N N 16 Y3S C15 C16 SING N N 17 Y3S N1 C6 SING N N 18 Y3S N1 C5 SING N N 19 Y3S C6 O2 DOUB N N 20 Y3S C5 C17 DOUB Y N 21 Y3S C5 C4 SING Y N 22 Y3S C17 C18 SING Y N 23 Y3S C4 C3 DOUB Y N 24 Y3S C18 C2 DOUB Y N 25 Y3S C3 C2 SING Y N 26 Y3S C2 O1 SING N N 27 Y3S O1 C1 SING N N 28 Y3S N1 H1 SING N N 29 Y3S C4 H2 SING N N 30 Y3S C7 H3 SING N N 31 Y3S C7 H4 SING N N 32 Y3S C8 H5 SING N N 33 Y3S C8 H6 SING N N 34 Y3S C15 H7 SING N N 35 Y3S C17 H8 SING N N 36 Y3S C1 H9 SING N N 37 Y3S C1 H10 SING N N 38 Y3S C1 H11 SING N N 39 Y3S C11 H12 SING N N 40 Y3S C12 H13 SING N N 41 Y3S C14 H14 SING N N 42 Y3S C14 H15 SING N N 43 Y3S C16 H16 SING N N 44 Y3S C16 H17 SING N N 45 Y3S C16 H18 SING N N 46 Y3S C18 H19 SING N N 47 Y3S C3 H20 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y3S InChI InChI 1.06 "InChI=1S/C18H20FN3O3S/c1-12-11-21(17(23)16-15(19)7-10-26-16)8-9-22(12)18(24)20-13-3-5-14(25-2)6-4-13/h3-7,10,12H,8-9,11H2,1-2H3,(H,20,24)/t12-/m1/s1" Y3S InChIKey InChI 1.06 IFZPOZKASMLFRK-GFCCVEGCSA-N Y3S SMILES_CANONICAL CACTVS 3.385 "COc1ccc(NC(=O)N2CCN(C[C@H]2C)C(=O)c3sccc3F)cc1" Y3S SMILES CACTVS 3.385 "COc1ccc(NC(=O)N2CCN(C[CH]2C)C(=O)c3sccc3F)cc1" Y3S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1CN(CCN1C(=O)Nc2ccc(cc2)OC)C(=O)c3c(ccs3)F" Y3S SMILES "OpenEye OEToolkits" 2.0.7 "CC1CN(CCN1C(=O)Nc2ccc(cc2)OC)C(=O)c3c(ccs3)F" # _pdbx_chem_comp_identifier.comp_id Y3S _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-4-(3-fluoranylthiophen-2-yl)carbonyl-~{N}-(4-methoxyphenyl)-2-methyl-piperazine-1-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y3S "Create component" 2021-02-03 RCSB Y3S "Initial release" 2021-02-17 RCSB Y3S "Modify coordinates" 2022-12-14 PDBE #