data_Y3V # _chem_comp.id Y3V _chem_comp.name "(2S)-N-(cyclopropylmethyl)-2-methyl-4-(1-methyl-1H-pyrrole-2-carbonyl)piperazine-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H24 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-03 _chem_comp.pdbx_modified_date 2021-02-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 304.387 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y3V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5S9H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y3V N1 N1 N 0 1 N N N -18.366 13.775 25.272 -1.498 -0.720 -0.520 N1 Y3V 1 Y3V N3 N2 N 0 1 N N N -19.263 15.454 27.350 1.105 -0.825 0.305 N3 Y3V 2 Y3V C4 C1 C 0 1 N N N -17.505 12.969 24.622 -2.831 -0.679 -0.325 C4 Y3V 3 Y3V C5 C2 C 0 1 Y N N -16.461 13.510 23.819 -3.518 0.612 -0.221 C5 Y3V 4 Y3V C6 C3 C 0 1 Y N N -15.689 14.623 24.043 -3.106 1.802 -0.785 C6 Y3V 5 Y3V C7 C4 C 0 1 Y N N -14.791 14.760 22.983 -4.052 2.771 -0.436 C7 Y3V 6 Y3V C8 C5 C 0 1 Y N N -15.013 13.741 22.101 -5.004 2.170 0.318 C8 Y3V 7 Y3V C10 C6 C 0 1 N N N -18.563 15.197 24.982 -0.716 0.521 -0.602 C10 Y3V 8 Y3V C13 C7 C 0 1 N N N -20.902 18.411 28.446 4.587 0.244 -0.183 C13 Y3V 9 Y3V C15 C8 C 0 1 N N N -22.147 19.031 30.631 6.622 1.859 -0.490 C15 Y3V 10 Y3V C1 C9 C 0 1 N N N -17.810 13.702 28.300 1.231 -3.260 0.107 C1 Y3V 11 Y3V C11 C10 C 0 1 N N N -18.477 16.027 26.252 0.408 0.461 0.440 C11 Y3V 12 Y3V C12 C11 C 0 1 N N N -19.971 16.166 28.251 2.438 -0.866 0.111 C12 Y3V 13 Y3V C14 C12 C 0 1 N N N -20.883 18.940 29.846 5.163 1.657 -0.076 C14 Y3V 14 Y3V C16 C13 C 0 1 N N N -21.494 20.272 30.108 6.233 1.906 0.989 C16 Y3V 15 Y3V C2 C14 C 0 1 N N R -19.115 14.003 27.583 0.324 -2.062 0.393 C2 Y3V 16 Y3V C3 C15 C 0 1 N N N -19.276 13.250 26.286 -0.800 -2.007 -0.649 C3 Y3V 17 Y3V C9 C16 C 0 1 N N N -16.586 11.789 21.885 -5.479 -0.136 1.189 C9 Y3V 18 Y3V N2 N3 N 0 1 Y N N -16.066 12.961 22.584 -4.694 0.857 0.451 N2 Y3V 19 Y3V N4 N4 N 0 1 N N N -19.802 17.491 28.216 3.159 0.273 0.140 N4 Y3V 20 Y3V O1 O1 O 0 1 N N N -17.644 11.739 24.660 -3.465 -1.714 -0.235 O1 Y3V 21 Y3V O2 O2 O 0 1 N N N -20.725 15.604 29.079 2.991 -1.930 -0.090 O2 Y3V 22 Y3V H7 H1 H 0 1 N N N -15.764 15.282 24.896 -2.220 1.956 -1.382 H7 Y3V 23 Y3V H8 H2 H 0 1 N N N -14.049 15.538 22.878 -4.028 3.813 -0.716 H8 Y3V 24 Y3V H9 H3 H 0 1 N N N -14.467 13.568 21.185 -5.870 2.657 0.741 H9 Y3V 25 Y3V H14 H4 H 0 1 N N N -17.786 15.532 24.279 -0.286 0.618 -1.599 H14 Y3V 26 Y3V H13 H5 H 0 1 N N N -19.554 15.338 24.526 -1.362 1.375 -0.395 H13 Y3V 27 Y3V H19 H6 H 0 1 N N N -20.818 19.253 27.743 4.723 -0.128 -1.198 H19 Y3V 28 Y3V H18 H7 H 0 1 N N N -21.852 17.884 28.275 5.105 -0.413 0.517 H18 Y3V 29 Y3V H22 H8 H 0 1 N N N -23.093 18.680 30.193 7.172 0.985 -0.838 H22 Y3V 30 Y3V H21 H9 H 0 1 N N N -22.141 18.819 31.710 6.883 2.802 -0.971 H21 Y3V 31 Y3V H2 H10 H 0 1 N N N -17.761 14.283 29.233 1.639 -3.176 -0.900 H2 Y3V 32 Y3V H3 H11 H 0 1 N N N -17.759 12.628 28.534 2.047 -3.279 0.830 H3 Y3V 33 Y3V H1 H12 H 0 1 N N N -16.964 13.976 27.652 0.652 -4.181 0.189 H1 Y3V 34 Y3V H16 H13 H 0 1 N N N -17.424 16.086 26.565 -0.016 0.545 1.441 H16 Y3V 35 Y3V H15 H14 H 0 1 N N N -18.853 17.038 26.039 1.110 1.277 0.268 H15 Y3V 36 Y3V H20 H15 H 0 1 N N N -19.978 18.709 30.427 4.464 2.467 -0.286 H20 Y3V 37 Y3V H24 H16 H 0 1 N N N -21.961 20.835 29.286 6.527 1.062 1.614 H24 Y3V 38 Y3V H23 H17 H 0 1 N N N -21.008 20.973 30.803 6.237 2.879 1.480 H23 Y3V 39 Y3V H4 H18 H 0 1 N N N -19.932 13.687 28.248 -0.106 -2.157 1.390 H4 Y3V 40 Y3V H6 H19 H 0 1 N N N -19.054 12.186 26.455 -1.503 -2.822 -0.473 H6 Y3V 41 Y3V H5 H20 H 0 1 N N N -20.312 13.356 25.932 -0.377 -2.096 -1.650 H5 Y3V 42 Y3V H10 H21 H 0 1 N N N -17.410 11.350 22.467 -5.200 -0.109 2.242 H10 Y3V 43 Y3V H12 H22 H 0 1 N N N -16.956 12.088 20.893 -6.540 0.092 1.088 H12 Y3V 44 Y3V H11 H23 H 0 1 N N N -15.783 11.046 21.768 -5.280 -1.129 0.786 H11 Y3V 45 Y3V H17 H24 H 0 1 N N N -18.892 17.860 28.026 2.731 1.111 0.374 H17 Y3V 46 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y3V C1 C2 SING N N 1 Y3V C2 C3 SING N N 2 Y3V C3 N1 SING N N 3 Y3V N1 C4 SING N N 4 Y3V C4 O1 DOUB N N 5 Y3V C4 C5 SING N N 6 Y3V C5 C6 DOUB Y N 7 Y3V C6 C7 SING Y N 8 Y3V C7 C8 DOUB Y N 9 Y3V C8 N2 SING Y N 10 Y3V N2 C9 SING N N 11 Y3V N1 C10 SING N N 12 Y3V C10 C11 SING N N 13 Y3V C11 N3 SING N N 14 Y3V N3 C12 SING N N 15 Y3V C12 O2 DOUB N N 16 Y3V C12 N4 SING N N 17 Y3V N4 C13 SING N N 18 Y3V C13 C14 SING N N 19 Y3V C14 C15 SING N N 20 Y3V C15 C16 SING N N 21 Y3V C2 N3 SING N N 22 Y3V C14 C16 SING N N 23 Y3V C5 N2 SING Y N 24 Y3V C6 H7 SING N N 25 Y3V C7 H8 SING N N 26 Y3V C8 H9 SING N N 27 Y3V C10 H14 SING N N 28 Y3V C10 H13 SING N N 29 Y3V C13 H19 SING N N 30 Y3V C13 H18 SING N N 31 Y3V C15 H22 SING N N 32 Y3V C15 H21 SING N N 33 Y3V C1 H2 SING N N 34 Y3V C1 H3 SING N N 35 Y3V C1 H1 SING N N 36 Y3V C11 H16 SING N N 37 Y3V C11 H15 SING N N 38 Y3V C14 H20 SING N N 39 Y3V C16 H24 SING N N 40 Y3V C16 H23 SING N N 41 Y3V C2 H4 SING N N 42 Y3V C3 H6 SING N N 43 Y3V C3 H5 SING N N 44 Y3V C9 H10 SING N N 45 Y3V C9 H12 SING N N 46 Y3V C9 H11 SING N N 47 Y3V N4 H17 SING N N 48 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y3V SMILES ACDLabs 12.01 "N3(C(=O)c1cccn1C)CCN(C(=O)NCC2CC2)C(C)C3" Y3V InChI InChI 1.03 "InChI=1S/C16H24N4O2/c1-12-11-19(15(21)14-4-3-7-18(14)2)8-9-20(12)16(22)17-10-13-5-6-13/h3-4,7,12-13H,5-6,8-11H2,1-2H3,(H,17,22)/t12-/m0/s1" Y3V InChIKey InChI 1.03 XDZATLOJFOESFE-LBPRGKRZSA-N Y3V SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1CN(CCN1C(=O)NCC2CC2)C(=O)c3cccn3C" Y3V SMILES CACTVS 3.385 "C[CH]1CN(CCN1C(=O)NCC2CC2)C(=O)c3cccn3C" Y3V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1CN(CCN1C(=O)NCC2CC2)C(=O)c3cccn3C" Y3V SMILES "OpenEye OEToolkits" 2.0.7 "CC1CN(CCN1C(=O)NCC2CC2)C(=O)c3cccn3C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y3V "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-N-(cyclopropylmethyl)-2-methyl-4-(1-methyl-1H-pyrrole-2-carbonyl)piperazine-1-carboxamide" Y3V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-~{N}-(cyclopropylmethyl)-2-methyl-4-(1-methylpyrrol-2-yl)carbonyl-piperazine-1-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y3V "Create component" 2021-02-03 RCSB Y3V "Initial release" 2021-02-17 RCSB ##