data_Y3Y # _chem_comp.id Y3Y _chem_comp.name "(2R)-N-(2-methoxyethyl)-2-methyl-4-thiophen-2-ylcarbonyl-piperazine-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H21 N3 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-03 _chem_comp.pdbx_modified_date 2022-12-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 311.400 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y3Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8BW2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y3Y N1 N1 N 0 1 N N N -21.062 16.409 27.665 3.197 -0.210 -0.379 N1 Y3Y 1 Y3Y N3 N2 N 0 1 N N N -18.645 13.078 25.078 -1.393 -0.876 0.674 N3 Y3Y 2 Y3Y C4 C1 C 0 1 N N N -20.744 15.099 27.792 2.477 -1.332 -0.183 C4 Y3Y 3 Y3Y C5 C2 C 0 1 N N N -18.842 15.308 26.108 0.447 -0.069 -0.710 C5 Y3Y 4 Y3Y C6 C3 C 0 1 N N N -18.961 14.494 24.831 -0.588 0.312 0.356 C6 Y3Y 5 Y3Y C7 C4 C 0 1 N N N -17.736 12.347 24.398 -2.736 -0.842 0.569 C7 Y3Y 6 Y3Y C8 C5 C 0 1 Y N N -16.680 12.982 23.578 -3.402 0.363 0.065 C8 Y3Y 7 Y3Y C10 C6 C 0 1 Y N N -14.899 14.352 22.798 -4.868 1.653 -1.130 C10 Y3Y 8 Y3Y C13 C7 C 0 1 N N R -19.236 13.243 27.424 0.328 -2.484 0.036 C13 Y3Y 9 Y3Y C1 C8 C 0 1 N N N -23.384 19.030 30.950 5.175 3.437 0.315 C1 Y3Y 10 Y3Y O1 O1 O 0 1 N N N -23.361 18.503 29.633 4.702 2.102 0.497 O1 Y3Y 11 Y3Y C2 C9 C 0 1 N N N -22.113 17.940 29.312 5.217 1.167 -0.454 C2 Y3Y 12 Y3Y C3 C10 C 0 1 N N N -22.307 17.004 28.143 4.646 -0.222 -0.164 C3 Y3Y 13 Y3Y O2 O2 O 0 1 N N N -21.476 14.296 28.407 3.039 -2.376 0.084 O2 Y3Y 14 Y3Y N2 N3 N 0 1 N N N -19.632 14.634 27.146 1.133 -1.296 -0.282 N2 Y3Y 15 Y3Y O3 O3 O 0 1 N N N -17.694 11.101 24.452 -3.397 -1.812 0.892 O3 Y3Y 16 Y3Y C9 C11 C 0 1 Y N N -15.949 14.201 23.781 -4.433 0.383 -0.832 C9 Y3Y 17 Y3Y C11 C12 C 0 1 Y N N -14.921 13.469 21.774 -4.225 2.638 -0.493 C11 Y3Y 18 Y3Y S1 S1 S 0 1 Y N N -16.170 12.116 22.034 -3.007 2.014 0.525 S1 Y3Y 19 Y3Y C12 C13 C 0 1 N N N -19.433 12.463 26.144 -0.707 -2.103 1.102 C12 Y3Y 20 Y3Y C14 C14 C 0 1 N N N -17.823 13.114 27.963 -0.389 -2.970 -1.225 C14 Y3Y 21 Y3Y H1 H1 H 0 1 N N N -20.401 17.009 27.214 2.757 0.605 -0.666 H1 Y3Y 22 Y3Y H2 H2 H 0 1 N N N -17.788 15.365 26.418 -0.055 -0.243 -1.662 H2 Y3Y 23 Y3Y H3 H3 H 0 1 N N N -19.231 16.323 25.942 1.173 0.736 -0.822 H3 Y3Y 24 Y3Y H4 H4 H 0 1 N N N -18.261 14.894 24.083 -1.235 1.100 -0.027 H4 Y3Y 25 Y3Y H5 H5 H 0 1 N N N -19.990 14.572 24.449 -0.077 0.658 1.254 H5 Y3Y 26 Y3Y H6 H6 H 0 1 N N N -14.145 15.121 22.877 -5.676 1.840 -1.822 H6 Y3Y 27 Y3Y H7 H7 H 0 1 N N N -19.922 12.832 28.179 0.975 -3.274 0.416 H7 Y3Y 28 Y3Y H8 H8 H 0 1 N N N -24.376 19.458 31.157 4.887 3.793 -0.674 H8 Y3Y 29 Y3Y H9 H9 H 0 1 N N N -23.175 18.226 31.670 4.739 4.085 1.075 H9 Y3Y 30 Y3Y H10 H10 H 0 1 N N N -22.619 19.815 31.044 6.261 3.453 0.404 H10 Y3Y 31 Y3Y H11 H11 H 0 1 N N N -21.723 17.382 30.176 4.929 1.476 -1.459 H11 Y3Y 32 Y3Y H12 H12 H 0 1 N N N -21.404 18.736 29.039 6.304 1.136 -0.380 H12 Y3Y 33 Y3Y H13 H13 H 0 1 N N N -22.764 17.568 27.317 4.858 -0.494 0.871 H13 Y3Y 34 Y3Y H14 H14 H 0 1 N N N -22.984 16.194 28.453 5.106 -0.951 -0.832 H14 Y3Y 35 Y3Y H15 H15 H 0 1 N N N -16.156 14.913 24.566 -4.862 -0.509 -1.263 H15 Y3Y 36 Y3Y H16 H16 H 0 1 N N N -14.285 13.541 20.904 -4.445 3.689 -0.611 H16 Y3Y 37 Y3Y H17 H17 H 0 1 N N N -20.498 12.474 25.867 -0.205 -1.929 2.053 H17 Y3Y 38 Y3Y H18 H18 H 0 1 N N N -19.103 11.424 26.292 -1.433 -2.909 1.211 H18 Y3Y 39 Y3Y H19 H19 H 0 1 N N N -17.729 13.697 28.891 0.348 -3.231 -1.985 H19 Y3Y 40 Y3Y H20 H20 H 0 1 N N N -17.605 12.056 28.171 -0.990 -3.847 -0.986 H20 Y3Y 41 Y3Y H21 H21 H 0 1 N N N -17.110 13.496 27.217 -1.036 -2.179 -1.604 H21 Y3Y 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y3Y C11 S1 SING Y N 1 Y3Y C11 C10 DOUB Y N 2 Y3Y S1 C8 SING Y N 3 Y3Y C10 C9 SING Y N 4 Y3Y C8 C9 DOUB Y N 5 Y3Y C8 C7 SING N N 6 Y3Y C7 O3 DOUB N N 7 Y3Y C7 N3 SING N N 8 Y3Y C6 N3 SING N N 9 Y3Y C6 C5 SING N N 10 Y3Y N3 C12 SING N N 11 Y3Y C5 N2 SING N N 12 Y3Y C12 C13 SING N N 13 Y3Y N2 C13 SING N N 14 Y3Y N2 C4 SING N N 15 Y3Y C13 C14 SING N N 16 Y3Y N1 C4 SING N N 17 Y3Y N1 C3 SING N N 18 Y3Y C4 O2 DOUB N N 19 Y3Y C3 C2 SING N N 20 Y3Y C2 O1 SING N N 21 Y3Y O1 C1 SING N N 22 Y3Y N1 H1 SING N N 23 Y3Y C5 H2 SING N N 24 Y3Y C5 H3 SING N N 25 Y3Y C6 H4 SING N N 26 Y3Y C6 H5 SING N N 27 Y3Y C10 H6 SING N N 28 Y3Y C13 H7 SING N N 29 Y3Y C1 H8 SING N N 30 Y3Y C1 H9 SING N N 31 Y3Y C1 H10 SING N N 32 Y3Y C2 H11 SING N N 33 Y3Y C2 H12 SING N N 34 Y3Y C3 H13 SING N N 35 Y3Y C3 H14 SING N N 36 Y3Y C9 H15 SING N N 37 Y3Y C11 H16 SING N N 38 Y3Y C12 H17 SING N N 39 Y3Y C12 H18 SING N N 40 Y3Y C14 H19 SING N N 41 Y3Y C14 H20 SING N N 42 Y3Y C14 H21 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y3Y InChI InChI 1.06 "InChI=1S/C14H21N3O3S/c1-11-10-16(13(18)12-4-3-9-21-12)6-7-17(11)14(19)15-5-8-20-2/h3-4,9,11H,5-8,10H2,1-2H3,(H,15,19)/t11-/m1/s1" Y3Y InChIKey InChI 1.06 PMIQPYIXNLYXTF-LLVKDONJSA-N Y3Y SMILES_CANONICAL CACTVS 3.385 "COCCNC(=O)N1CCN(C[C@H]1C)C(=O)c2sccc2" Y3Y SMILES CACTVS 3.385 "COCCNC(=O)N1CCN(C[CH]1C)C(=O)c2sccc2" Y3Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1CN(CCN1C(=O)NCCOC)C(=O)c2cccs2" Y3Y SMILES "OpenEye OEToolkits" 2.0.7 "CC1CN(CCN1C(=O)NCCOC)C(=O)c2cccs2" # _pdbx_chem_comp_identifier.comp_id Y3Y _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-~{N}-(2-methoxyethyl)-2-methyl-4-thiophen-2-ylcarbonyl-piperazine-1-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y3Y "Create component" 2021-02-03 RCSB Y3Y "Initial release" 2021-02-17 RCSB Y3Y "Modify coordinates" 2022-12-14 PDBE #