data_Y43 # _chem_comp.id Y43 _chem_comp.name ;2'-deoxyinosine 5'-triphosphate ; _chem_comp.type non-polymer _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H15 N4 O13 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-03 _chem_comp.pdbx_modified_date 2023-04-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 492.166 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y43 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FN3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y43 C4 C1 C 0 1 Y N N -22.194 48.455 5.048 5.618 0.769 -0.383 C4 Y43 1 Y43 C5 C2 C 0 1 Y N N -23.328 48.363 5.752 6.003 1.668 0.608 C5 Y43 2 Y43 C6 C3 C 0 1 N N N -23.964 49.481 6.140 7.250 2.410 0.412 C6 Y43 3 Y43 C8 C4 C 0 1 Y N N -22.623 46.354 5.356 4.137 0.773 1.242 C8 Y43 4 Y43 N1 N1 N 0 1 N N N -23.454 50.756 5.798 7.957 2.186 -0.712 N1 Y43 5 Y43 N3 N2 N 0 1 N N N -21.691 49.651 4.707 6.414 0.623 -1.485 N3 Y43 6 Y43 C2 C5 C 0 1 N N N -22.347 50.844 5.088 7.550 1.332 -1.611 C2 Y43 7 Y43 CAB C6 C 0 1 N N S -19.342 45.106 4.952 2.894 -3.065 -0.309 CAB Y43 8 Y43 CAC C7 C 0 1 N N N -19.274 46.627 4.855 4.174 -2.201 -0.373 CAC Y43 9 Y43 CAD C8 C 0 1 N N R -20.528 46.895 4.016 3.652 -0.781 -0.686 CAD Y43 10 Y43 CAF C9 C 0 1 N N R -19.744 44.775 3.555 1.749 -2.066 -0.589 CAF Y43 11 Y43 CAG C10 C 0 1 N N N -20.258 43.341 3.519 0.525 -2.406 0.264 CAG Y43 12 Y43 N7 N3 N 0 1 Y N N -23.592 47.062 5.954 5.061 1.629 1.578 N7 Y43 13 Y43 N9 N4 N 0 1 Y N N -21.759 47.219 4.796 4.442 0.222 0.032 N9 Y43 14 Y43 O6 O1 O 0 1 N N N -25.007 49.412 6.800 7.639 3.211 1.247 O6 Y43 15 Y43 OAA O2 O 0 1 N N N -18.065 44.539 5.213 2.927 -4.083 -1.311 OAA Y43 16 Y43 OAE O3 O 0 1 N N N -20.889 45.606 3.473 2.287 -0.776 -0.216 OAE Y43 17 Y43 OAH O4 O 0 1 N N N -21.430 43.258 4.367 -0.558 -1.546 -0.094 OAH Y43 18 Y43 OAJ O5 O 0 1 N N N -23.302 42.142 5.847 -2.693 -3.039 0.261 OAJ Y43 19 Y43 OAK O6 O 0 1 N N N -21.706 40.679 4.452 -1.855 -1.492 2.071 OAK Y43 20 Y43 OAL O7 O 0 1 N N N -20.918 41.831 6.657 -2.934 -0.430 0.052 OAL Y43 21 Y43 OAN O8 O 0 1 N N N -18.667 41.183 5.325 -5.177 -0.719 1.172 OAN Y43 22 Y43 OAO O9 O 0 1 N N N -18.587 42.880 7.241 -3.873 1.370 1.723 OAO Y43 23 Y43 OAP O10 O 0 1 N N N -19.015 40.444 7.867 -5.004 1.042 -0.627 OAP Y43 24 Y43 OAR O11 O 0 1 N N N -20.166 38.525 6.357 -6.850 2.452 0.361 OAR Y43 25 Y43 OAS O12 O 0 1 N N N -18.206 37.966 7.937 -6.479 2.618 -2.130 OAS Y43 26 Y43 OAT O13 O 0 1 N N N -20.562 38.660 8.914 -7.537 0.470 -1.043 OAT Y43 27 Y43 PAI P1 P 0 1 N N N -21.831 41.909 5.265 -2.007 -1.624 0.605 PAI Y43 28 Y43 PAM P2 P 0 1 N N N -19.299 41.650 6.761 -4.267 0.294 0.593 PAM Y43 29 Y43 PAQ P3 P 0 1 N N N -19.547 38.888 7.835 -6.476 1.663 -0.833 PAQ Y43 30 Y43 H1 H1 H 0 1 N N N -22.549 45.277 5.329 3.262 0.539 1.830 H1 Y43 31 Y43 H2 H2 H 0 1 N N N -20.844 49.699 4.178 6.158 0.000 -2.183 H2 Y43 32 Y43 H3 H3 H 0 1 N N N -21.950 51.807 4.803 8.153 1.189 -2.496 H3 Y43 33 Y43 H4 H4 H 0 1 N N N -20.104 44.789 5.679 2.781 -3.507 0.681 H4 Y43 34 Y43 H5 H5 H 0 1 N N N -18.360 46.963 4.343 4.692 -2.214 0.586 H5 Y43 35 Y43 H6 H6 H 0 1 N N N -19.336 47.103 5.845 4.832 -2.552 -1.167 H6 Y43 36 Y43 H7 H7 H 0 1 N N N -20.331 47.643 3.234 3.687 -0.592 -1.759 H7 Y43 37 Y43 H8 H8 H 0 1 N N N -18.963 44.977 2.807 1.488 -2.076 -1.647 H8 Y43 38 Y43 H9 H9 H 0 1 N N N -20.525 43.067 2.488 0.238 -3.443 0.090 H9 Y43 39 Y43 H10 H10 H 0 1 N N N -19.480 42.657 3.891 0.767 -2.268 1.317 H10 Y43 40 Y43 H11 H11 H 0 1 N N N -17.802 44.746 6.102 3.645 -4.721 -1.200 H11 Y43 41 Y43 H12 H12 H 0 1 N N N -23.870 41.433 5.568 -2.824 -3.194 -0.685 H12 Y43 42 Y43 H13 H13 H 0 1 N N N -17.921 43.127 6.610 -3.277 2.066 1.413 H13 Y43 43 Y43 H14 H14 H 0 1 N N N -18.110 37.457 7.141 -7.335 3.027 -2.315 H14 Y43 44 Y43 H15 H15 H 0 1 N N N -21.371 38.347 8.527 -7.353 -0.089 -1.810 H15 Y43 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y43 OAE CAF SING N N 1 Y43 OAE CAD SING N N 2 Y43 CAG CAF SING N N 3 Y43 CAG OAH SING N N 4 Y43 CAF CAB SING N N 5 Y43 CAD N9 SING N N 6 Y43 CAD CAC SING N N 7 Y43 OAH PAI SING N N 8 Y43 OAK PAI DOUB N N 9 Y43 N3 C4 SING N N 10 Y43 N3 C2 SING N N 11 Y43 N9 C4 SING Y N 12 Y43 N9 C8 SING Y N 13 Y43 CAC CAB SING N N 14 Y43 CAB OAA SING N N 15 Y43 C4 C5 DOUB Y N 16 Y43 C2 N1 DOUB N N 17 Y43 PAI OAJ SING N N 18 Y43 PAI OAL SING N N 19 Y43 OAN PAM DOUB N N 20 Y43 C8 N7 DOUB Y N 21 Y43 C5 N7 SING Y N 22 Y43 C5 C6 SING N N 23 Y43 N1 C6 SING N N 24 Y43 C6 O6 DOUB N N 25 Y43 OAR PAQ DOUB N N 26 Y43 OAL PAM SING N N 27 Y43 PAM OAO SING N N 28 Y43 PAM OAP SING N N 29 Y43 PAQ OAP SING N N 30 Y43 PAQ OAS SING N N 31 Y43 PAQ OAT SING N N 32 Y43 C8 H1 SING N N 33 Y43 N3 H2 SING N N 34 Y43 C2 H3 SING N N 35 Y43 CAB H4 SING N N 36 Y43 CAC H5 SING N N 37 Y43 CAC H6 SING N N 38 Y43 CAD H7 SING N N 39 Y43 CAF H8 SING N N 40 Y43 CAG H9 SING N N 41 Y43 CAG H10 SING N N 42 Y43 OAA H11 SING N N 43 Y43 OAJ H12 SING N N 44 Y43 OAO H13 SING N N 45 Y43 OAS H14 SING N N 46 Y43 OAT H15 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y43 SMILES ACDLabs 12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC1OC(CC1O)n1cnc2c1NC=NC2=O" Y43 InChI InChI 1.06 "InChI=1S/C10H15N4O13P3/c15-5-1-7(14-4-13-8-9(14)11-3-12-10(8)16)25-6(5)2-24-29(20,21)27-30(22,23)26-28(17,18)19/h3-7,15H,1-2H2,(H,20,21)(H,22,23)(H,11,12,16)(H2,17,18,19)/t5-,6+,7+/m0/s1" Y43 InChIKey InChI 1.06 UFJPAQSLHAGEBL-RRKCRQDMSA-N Y43 SMILES_CANONICAL CACTVS 3.385 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)n2cnc3C(=O)N=CNc23" Y43 SMILES CACTVS 3.385 "O[CH]1C[CH](O[CH]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)n2cnc3C(=O)N=CNc23" Y43 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)NC=NC2=O" Y43 SMILES "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1C3CC(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)NC=NC2=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y43 "SYSTEMATIC NAME" ACDLabs 12.01 ;2'-deoxyinosine 5'-(tetrahydrogen triphosphate) ; Y43 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},5~{R})-3-oxidanyl-5-(6-oxidanylidene-3~{H}-purin-9-yl)oxolan-2-yl]methyl [oxidanyl(phosphonooxy)phosphoryl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y43 "Create component" 2023-01-03 RCSB Y43 "Initial release" 2023-05-03 RCSB #