data_Y44 # _chem_comp.id Y44 _chem_comp.name "N-[(pyridin-3-yl)methyl]-4-(thiophene-2-carbonyl)piperazine-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H18 N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-03 _chem_comp.pdbx_modified_date 2021-02-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 330.405 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y44 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5S9D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y44 N1 N1 N 0 1 N N N -15.872 17.250 25.657 -2.442 -0.899 0.094 N1 Y44 1 Y44 N3 N2 N 0 1 N N N -17.285 15.571 26.367 -0.259 -1.691 0.332 N3 Y44 2 Y44 C4 C1 C 0 1 Y N N -13.854 20.066 26.911 -4.792 0.948 -1.201 C4 Y44 3 Y44 C5 C2 C 0 1 Y N N -14.012 21.412 27.146 -5.504 2.130 -1.065 C5 Y44 4 Y44 C6 C3 C 0 1 Y N N -15.040 22.070 26.521 -6.016 2.469 0.173 C6 Y44 5 Y44 C7 C4 C 0 1 Y N N -15.727 20.153 25.479 -5.170 0.548 1.122 C7 Y44 6 Y44 C8 C5 C 0 1 N N N -17.422 14.356 27.170 0.715 -2.792 0.296 C8 Y44 7 Y44 C10 C6 C 0 1 N N N -20.165 12.658 25.265 3.618 -0.835 -0.065 C10 Y44 8 Y44 C13 C7 C 0 1 Y N N -23.087 12.956 27.518 5.428 2.275 0.773 C13 Y44 9 Y44 C15 C8 C 0 1 N N N -18.361 14.169 24.705 1.343 0.038 -0.298 C15 Y44 10 Y44 C1 C9 C 0 1 N N N -16.432 16.570 26.677 -1.561 -1.919 0.069 C1 Y44 11 Y44 C11 C10 C 0 1 Y N N -21.341 12.528 26.066 4.108 0.539 0.075 C11 Y44 12 Y44 C12 C11 C 0 1 Y N N -21.709 13.142 27.250 5.190 0.922 0.818 C12 Y44 13 Y44 C14 C12 C 0 1 Y N N -23.667 12.067 26.693 4.573 2.977 0.021 C14 Y44 14 Y44 C16 C13 C 0 1 N N N -18.155 15.581 25.198 0.212 -0.340 0.667 C16 Y44 15 Y44 C2 C14 C 0 1 N N N -14.590 17.928 25.773 -3.859 -1.149 -0.180 C2 Y44 16 Y44 C3 C15 C 0 1 Y N N -14.725 19.403 26.063 -4.625 0.146 -0.083 C3 Y44 17 Y44 C9 C16 C 0 1 N N N -18.822 13.781 27.077 1.846 -2.414 -0.668 C9 Y44 18 Y44 N2 N3 N 0 1 Y N N -15.903 21.468 25.690 -5.832 1.684 1.217 N2 Y44 19 Y44 N4 N4 N 0 1 N N N -19.165 13.453 25.690 2.316 -1.062 -0.334 N4 Y44 20 Y44 O1 O1 O 0 1 N N N -16.123 16.792 27.847 -1.941 -3.044 -0.192 O1 Y44 21 Y44 O2 O2 O 0 1 N N N -20.142 12.128 24.157 4.385 -1.772 0.060 O2 Y44 22 Y44 S1 S1 S 0 1 Y N N -22.599 11.498 25.503 3.405 1.957 -0.690 S1 Y44 23 Y44 H1 H1 H 0 1 N N N -16.358 17.290 24.784 -2.138 -0.001 0.298 H1 Y44 24 Y44 H4 H2 H 0 1 N N N -13.050 19.526 27.388 -4.381 0.657 -2.157 H4 Y44 25 Y44 H5 H3 H 0 1 N N N -13.341 21.939 27.808 -5.657 2.777 -1.916 H5 Y44 26 Y44 H6 H4 H 0 1 N N N -15.161 23.127 26.708 -6.571 3.388 0.287 H6 Y44 27 Y44 H7 H5 H 0 1 N N N -16.412 19.651 24.811 -5.044 -0.071 1.998 H7 Y44 28 Y44 H9 H6 H 0 1 N N N -16.703 13.606 26.808 1.123 -2.951 1.294 H9 Y44 29 Y44 H8 H7 H 0 1 N N N -17.204 14.596 28.221 0.226 -3.701 -0.052 H8 Y44 30 Y44 H13 H8 H 0 1 N N N -23.617 13.474 28.303 6.243 2.738 1.309 H13 Y44 31 Y44 H16 H9 H 0 1 N N N -17.388 13.671 24.586 0.934 0.198 -1.296 H16 Y44 32 Y44 H15 H10 H 0 1 N N N -18.885 14.185 23.738 1.829 0.950 0.049 H15 Y44 33 Y44 H12 H11 H 0 1 N N N -21.033 13.692 27.887 5.797 0.231 1.383 H12 Y44 34 Y44 H14 H12 H 0 1 N N N -24.696 11.751 26.778 4.616 4.048 -0.118 H14 Y44 35 Y44 H18 H13 H 0 1 N N N -17.691 16.182 24.402 -0.610 0.369 0.563 H18 Y44 36 Y44 H17 H14 H 0 1 N N N -19.127 16.019 25.469 0.584 -0.325 1.691 H17 Y44 37 Y44 H2 H15 H 0 1 N N N -14.020 17.461 26.590 -3.968 -1.561 -1.183 H2 Y44 38 Y44 H3 H16 H 0 1 N N N -14.042 17.806 24.827 -4.251 -1.858 0.549 H3 Y44 39 Y44 H11 H17 H 0 1 N N N -18.877 12.867 27.687 2.667 -3.123 -0.565 H11 Y44 40 Y44 H10 H18 H 0 1 N N N -19.541 14.521 27.460 1.474 -2.428 -1.693 H10 Y44 41 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y44 O1 C1 DOUB N N 1 Y44 C1 N1 SING N N 2 Y44 N1 C2 SING N N 3 Y44 C2 C3 SING N N 4 Y44 C3 C4 DOUB Y N 5 Y44 C4 C5 SING Y N 6 Y44 C5 C6 DOUB Y N 7 Y44 C6 N2 SING Y N 8 Y44 N2 C7 DOUB Y N 9 Y44 C1 N3 SING N N 10 Y44 N3 C8 SING N N 11 Y44 C8 C9 SING N N 12 Y44 C9 N4 SING N N 13 Y44 N4 C10 SING N N 14 Y44 C10 O2 DOUB N N 15 Y44 C10 C11 SING N N 16 Y44 C11 C12 DOUB Y N 17 Y44 C12 C13 SING Y N 18 Y44 C13 C14 DOUB Y N 19 Y44 C14 S1 SING Y N 20 Y44 N4 C15 SING N N 21 Y44 C15 C16 SING N N 22 Y44 C3 C7 SING Y N 23 Y44 N3 C16 SING N N 24 Y44 C11 S1 SING Y N 25 Y44 N1 H1 SING N N 26 Y44 C4 H4 SING N N 27 Y44 C5 H5 SING N N 28 Y44 C6 H6 SING N N 29 Y44 C7 H7 SING N N 30 Y44 C8 H9 SING N N 31 Y44 C8 H8 SING N N 32 Y44 C13 H13 SING N N 33 Y44 C15 H16 SING N N 34 Y44 C15 H15 SING N N 35 Y44 C12 H12 SING N N 36 Y44 C14 H14 SING N N 37 Y44 C16 H18 SING N N 38 Y44 C16 H17 SING N N 39 Y44 C2 H2 SING N N 40 Y44 C2 H3 SING N N 41 Y44 C9 H11 SING N N 42 Y44 C9 H10 SING N N 43 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y44 SMILES ACDLabs 12.01 "N(Cc1cccnc1)C(N3CCN(C(=O)c2cccs2)CC3)=O" Y44 InChI InChI 1.03 "InChI=1S/C16H18N4O2S/c21-15(14-4-2-10-23-14)19-6-8-20(9-7-19)16(22)18-12-13-3-1-5-17-11-13/h1-5,10-11H,6-9,12H2,(H,18,22)" Y44 InChIKey InChI 1.03 QWTHOPVYVVYMKH-UHFFFAOYSA-N Y44 SMILES_CANONICAL CACTVS 3.385 "O=C(NCc1cccnc1)N2CCN(CC2)C(=O)c3sccc3" Y44 SMILES CACTVS 3.385 "O=C(NCc1cccnc1)N2CCN(CC2)C(=O)c3sccc3" Y44 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cnc1)CNC(=O)N2CCN(CC2)C(=O)c3cccs3" Y44 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cnc1)CNC(=O)N2CCN(CC2)C(=O)c3cccs3" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y44 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(pyridin-3-yl)methyl]-4-(thiophene-2-carbonyl)piperazine-1-carboxamide" Y44 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-(pyridin-3-ylmethyl)-4-thiophen-2-ylcarbonyl-piperazine-1-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y44 "Create component" 2021-02-03 RCSB Y44 "Initial release" 2021-02-17 RCSB ##