data_Y48
#
_chem_comp.id Y48
_chem_comp.name "(1S,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-2-[(N-{[(2,4,5-trifluorophenyl)methoxy]carbonyl}-L-leucyl)amino]propane-1-sulfonic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H28 F3 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-01-19
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 539.523
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code Y48
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7TIY
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y48 C14 C1 C 0 1 N N N N N N 6.774 1.242 25.782 0.479 -2.064 -2.268 C14 Y48 1
Y48 C13 C2 C 0 1 N N N N N N 7.521 1.558 24.485 -0.502 -1.761 -1.133 C13 Y48 2
Y48 C12 C3 C 0 1 N N S N N N 7.265 0.447 23.474 -0.268 -0.337 -0.624 C12 Y48 3
Y48 C15 C4 C 0 1 N N N N N N 7.132 2.301 26.823 0.330 -3.526 -2.693 C15 Y48 4
Y48 C16 C5 C 0 1 N N N N N N 5.276 1.288 25.527 0.178 -1.153 -3.460 C16 Y48 5
Y48 C17 C6 C 0 1 N N N N N N 7.990 0.855 22.195 -1.311 0.006 0.408 C17 Y48 6
Y48 C1 C7 C 0 1 Y N N N N N 8.483 -5.384 24.193 5.758 0.389 -0.338 C1 Y48 7
Y48 C2 C8 C 0 1 Y N N N N N 8.513 -6.705 23.742 6.962 0.620 -0.982 C2 Y48 8
Y48 C3 C9 C 0 1 Y N N N N N 9.017 -7.710 24.560 8.138 0.668 -0.253 C3 Y48 9
Y48 C7 C10 C 0 1 N N N N N N 7.938 -4.258 23.313 4.479 0.331 -1.133 C7 Y48 10
Y48 C6 C11 C 0 1 Y N N N N N 8.956 -5.075 25.462 5.729 0.205 1.031 C6 Y48 11
Y48 C9 C12 C 0 1 N N N N N N 7.720 -1.942 23.320 2.141 -0.010 -0.794 C9 Y48 12
Y48 C5 C13 C 0 1 Y N N N N N 9.459 -6.078 26.278 6.904 0.253 1.761 C5 Y48 13
Y48 C4 C14 C 0 1 Y N N N N N 9.491 -7.393 25.831 8.111 0.484 1.118 C4 Y48 14
Y48 C20 C15 C 0 1 N N S N N N 7.994 1.811 19.993 -3.632 0.323 1.078 C20 Y48 15
Y48 C21 C16 C 0 1 N N S N N N 7.745 3.305 19.769 -4.007 -0.937 1.863 C21 Y48 16
Y48 C24 C17 C 0 1 N N N N N N 7.495 1.024 18.776 -4.876 0.877 0.381 C24 Y48 17
Y48 C25 C18 C 0 1 N N S N N N 8.093 -0.427 18.789 -4.532 2.208 -0.291 C25 Y48 18
Y48 C26 C19 C 0 1 N N N N N N 9.581 -0.363 18.755 -4.171 3.273 0.770 C26 Y48 19
Y48 C27 C20 C 0 1 N N N N N N 9.940 -1.581 17.859 -4.777 4.553 0.152 C27 Y48 20
Y48 C29 C21 C 0 1 N N N N N N 7.636 -1.176 17.570 -5.747 2.776 -0.992 C29 Y48 21
Y48 F1 F1 F 0 1 N N N N N N 9.916 -5.771 27.507 6.876 0.073 3.100 F1 Y48 22
Y48 F2 F2 F 0 1 N N N N N N 8.056 -7.020 22.511 6.989 0.799 -2.321 F2 Y48 23
Y48 F3 F3 F 0 1 N N N N N N 9.983 -8.356 26.637 9.258 0.530 1.829 F3 Y48 24
Y48 N11 N1 N 0 1 N N N N N N 7.810 -0.789 23.986 1.064 -0.248 -0.019 N11 Y48 25
Y48 N19 N2 N 0 1 N N N N N N 7.298 1.401 21.203 -2.618 -0.010 0.076 N19 Y48 26
Y48 N28 N3 N 0 1 N N N N N N 8.661 -1.841 17.029 -5.863 4.090 -0.720 N28 Y48 27
Y48 O10 O1 O 0 1 N N N N N N 7.191 -1.999 22.234 2.008 0.131 -1.993 O10 Y48 28
Y48 O18 O2 O 0 1 N N N N N N 9.177 0.695 22.106 -0.976 0.296 1.536 O18 Y48 29
Y48 O22 O3 O 0 1 N N N N N N 8.320 3.849 18.852 -5.078 -0.638 2.760 O22 Y48 30
Y48 O30 O4 O 0 1 N N N N N N 6.523 -1.187 17.135 -6.504 2.141 -1.695 O30 Y48 31
Y48 O8 O5 O 0 1 N N N N N N 8.245 -3.020 23.883 3.365 0.072 -0.238 O8 Y48 32
Y48 S1 S1 S 0 1 N Y N N N N 5.956 3.619 19.607 -4.529 -2.235 0.709 S1 Y48 33
Y48 H1 H1 H 0 1 N N N N N N 7.063 0.245 26.147 1.498 -1.888 -1.924 H1 Y48 34
Y48 H2 H2 H 0 1 N N N N N N 8.600 1.628 24.690 -1.523 -1.851 -1.502 H2 Y48 35
Y48 H3 H3 H 0 1 N N N N N N 7.163 2.515 24.078 -0.346 -2.468 -0.319 H3 Y48 36
Y48 H4 H4 H 0 1 N N N N N N 6.186 0.355 23.281 -0.336 0.363 -1.457 H4 Y48 37
Y48 H5 H5 H 0 1 N N N N N N 6.601 2.087 27.762 -0.689 -3.703 -3.037 H5 Y48 38
Y48 H6 H6 H 0 1 N N N N N N 8.217 2.286 27.003 1.028 -3.743 -3.501 H6 Y48 39
Y48 H7 H7 H 0 1 N N N N N N 6.836 3.294 26.453 0.544 -4.175 -1.844 H7 Y48 40
Y48 H8 H8 H 0 1 N N N N N N 4.738 1.061 26.459 0.284 -0.111 -3.156 H8 Y48 41
Y48 H9 H9 H 0 1 N N N N N N 4.995 2.292 25.176 0.877 -1.369 -4.268 H9 Y48 42
Y48 H10 H10 H 0 1 N N N N N N 5.012 0.545 24.761 -0.841 -1.329 -3.803 H10 Y48 43
Y48 H11 H11 H 0 1 N N N N N N 9.041 -8.732 24.212 9.078 0.848 -0.755 H11 Y48 44
Y48 H12 H12 H 0 1 N N N N N N 6.846 -4.359 23.226 4.323 1.283 -1.641 H12 Y48 45
Y48 H13 H13 H 0 1 N N N N N N 8.393 -4.323 22.314 4.545 -0.468 -1.871 H13 Y48 46
Y48 H14 H14 H 0 1 N N N N N N 8.932 -4.054 25.813 4.790 0.025 1.532 H14 Y48 47
Y48 H15 H15 H 0 1 N N N N N N 9.075 1.643 20.107 -3.235 1.072 1.763 H15 Y48 48
Y48 H16 H16 H 0 1 N N N N N N 8.001 3.796 20.719 -3.143 -1.281 2.431 H16 Y48 49
Y48 H17 H17 H 0 1 N N N N N N 7.809 1.539 17.856 -5.217 0.168 -0.373 H17 Y48 50
Y48 H18 H18 H 0 1 N N N N N N 6.397 0.965 18.806 -5.665 1.035 1.116 H18 Y48 51
Y48 H19 H19 H 0 1 N N N N N N 7.756 -0.947 19.698 -3.711 2.078 -0.996 H19 Y48 52
Y48 H20 H20 H 0 1 N N N N N N 10.008 -0.469 19.763 -4.638 3.044 1.728 H20 Y48 53
Y48 H21 H21 H 0 1 N N N N N N 9.930 0.579 18.307 -3.090 3.365 0.878 H21 Y48 54
Y48 H22 H22 H 0 1 N N N N N N 10.188 -2.457 18.475 -5.171 5.200 0.935 H22 Y48 55
Y48 H23 H23 H 0 1 N N N N N N 10.789 -1.343 17.201 -4.023 5.083 -0.431 H23 Y48 56
Y48 H24 H24 H 0 1 N N N N N N 8.272 -0.780 24.873 1.171 -0.360 0.938 H24 Y48 57
Y48 H25 H25 H 0 1 N N N N N N 6.310 1.529 21.286 -2.886 -0.243 -0.827 H25 Y48 58
Y48 H26 H26 H 0 1 N N N N N N 8.609 -2.418 16.214 -6.572 4.659 -1.058 H26 Y48 59
Y48 H27 H27 H 0 1 N N N N N N 8.078 4.767 18.826 -5.882 -0.324 2.323 H27 Y48 60
Y48 O2 O6 O 0 1 N Y N N N N ? ? ? -4.991 -3.375 1.604 O2 Y48 61
Y48 O1 O7 O 0 1 N Y N N N N ? ? ? -5.702 -1.839 0.011 O1 Y48 62
Y48 O3 O8 O 0 1 N Y N N N N ? ? ? -3.408 -2.766 0.015 O3 Y48 63
Y48 H28 H28 H 0 1 N Y N N N N ? ? ? -5.305 -4.153 1.121 H28 Y48 64
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y48 N28 C29 SING N N 1
Y48 N28 C27 SING N N 2
Y48 O30 C29 DOUB N N 3
Y48 C29 C25 SING N N 4
Y48 C27 C26 SING N N 5
Y48 C26 C25 SING N N 6
Y48 C24 C25 SING N N 7
Y48 C24 C20 SING N N 8
Y48 O22 C21 SING N N 9
Y48 C21 C20 SING N N 10
Y48 C20 N19 SING N N 11
Y48 N19 C17 SING N N 12
Y48 O18 C17 DOUB N N 13
Y48 C17 C12 SING N N 14
Y48 O10 C9 DOUB N N 15
Y48 F2 C2 SING N N 16
Y48 C7 O8 SING N N 17
Y48 C7 C1 SING N N 18
Y48 C9 O8 SING N N 19
Y48 C9 N11 SING N N 20
Y48 C12 N11 SING N N 21
Y48 C12 C13 SING N N 22
Y48 C2 C1 DOUB Y N 23
Y48 C2 C3 SING Y N 24
Y48 C1 C6 SING Y N 25
Y48 C13 C14 SING N N 26
Y48 C3 C4 DOUB Y N 27
Y48 C6 C5 DOUB Y N 28
Y48 C16 C14 SING N N 29
Y48 C14 C15 SING N N 30
Y48 C4 C5 SING Y N 31
Y48 C4 F3 SING N N 32
Y48 C5 F1 SING N N 33
Y48 C21 S1 SING N N 34
Y48 C14 H1 SING N N 35
Y48 C13 H2 SING N N 36
Y48 C13 H3 SING N N 37
Y48 C12 H4 SING N N 38
Y48 C15 H5 SING N N 39
Y48 C15 H6 SING N N 40
Y48 C15 H7 SING N N 41
Y48 C16 H8 SING N N 42
Y48 C16 H9 SING N N 43
Y48 C16 H10 SING N N 44
Y48 C3 H11 SING N N 45
Y48 C7 H12 SING N N 46
Y48 C7 H13 SING N N 47
Y48 C6 H14 SING N N 48
Y48 C20 H15 SING N N 49
Y48 C21 H16 SING N N 50
Y48 C24 H17 SING N N 51
Y48 C24 H18 SING N N 52
Y48 C25 H19 SING N N 53
Y48 C26 H20 SING N N 54
Y48 C26 H21 SING N N 55
Y48 C27 H22 SING N N 56
Y48 C27 H23 SING N N 57
Y48 N11 H24 SING N N 58
Y48 N19 H25 SING N N 59
Y48 N28 H26 SING N N 60
Y48 O22 H27 SING N N 61
Y48 S1 O2 SING N N 62
Y48 S1 O1 DOUB N N 63
Y48 S1 O3 DOUB N N 64
Y48 O2 H28 SING N N 65
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y48 SMILES ACDLabs 12.01 "CC(C)CC(NC(=O)OCc1cc(F)c(F)cc1F)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"
Y48 InChI InChI 1.03 "InChI=1S/C21H28F3N3O8S/c1-10(2)5-16(27-21(31)35-9-12-6-14(23)15(24)8-13(12)22)19(29)26-17(20(30)36(32,33)34)7-11-3-4-25-18(11)28/h6,8,10-11,16-17,20,30H,3-5,7,9H2,1-2H3,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t11-,16-,17-,20-/m0/s1"
Y48 InChIKey InChI 1.03 UQJSPTNSSUFGMT-IREPMIDKSA-N
Y48 SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OCc1cc(F)c(F)cc1F)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@@H](O)[S](O)(=O)=O"
Y48 SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OCc1cc(F)c(F)cc1F)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O"
Y48 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@@H](O)S(=O)(=O)O)NC(=O)OCc2cc(c(cc2F)F)F"
Y48 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2cc(c(cc2F)F)F"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y48 "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-2-[(N-{[(2,4,5-trifluorophenyl)methoxy]carbonyl}-L-leucyl)amino]propane-1-sulfonic acid"
Y48 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{S},2~{S})-2-[[(2~{S})-4-methyl-2-[[2,4,5-tris(fluoranyl)phenyl]methoxycarbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y48 "Create component" 2022-01-19 RCSB
Y48 "Initial release" 2022-05-04 RCSB
Y48 "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id Y48
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C21
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#