data_Y4E # _chem_comp.id Y4E _chem_comp.name "[(1~{R},3~{a}~{R})-1,3,3~{a},4-tetrahydro-[1,3]thiazolo[3,4-a]benzimidazol-1-yl]methanethiol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H12 N2 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-20 _chem_comp.pdbx_modified_date 2024-04-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 224.346 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y4E _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8R5U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y4E C10 C1 C 0 1 Y N N N N N -27.202 3.087 60.759 3.034 1.774 0.422 C10 Y4E 1 Y4E C11 C2 C 0 1 Y N N N N N -28.219 2.868 61.660 3.895 0.707 0.242 C11 Y4E 2 Y4E C12 C3 C 0 1 Y N N N N N -29.258 3.796 61.797 3.401 -0.529 -0.128 C12 Y4E 3 Y4E C13 C4 C 0 1 Y N N N N N -29.282 4.961 61.014 2.036 -0.705 -0.322 C13 Y4E 4 Y4E C02 C5 C 0 1 N N N N N N -27.080 7.850 57.613 -1.735 1.571 0.635 C02 Y4E 5 Y4E C03 C6 C 0 1 N N R N N N -27.241 7.393 59.111 -0.991 0.245 0.805 C03 Y4E 6 Y4E C05 C7 C 0 1 N N N N N N -29.022 8.412 60.813 -0.946 -2.364 0.141 C05 Y4E 7 Y4E C06 C8 C 0 1 N N R N N N -29.553 7.140 60.100 -0.103 -1.449 -0.773 C06 Y4E 8 Y4E C08 C9 C 0 1 Y N N N N N -28.221 5.188 60.071 1.169 0.369 -0.138 C08 Y4E 9 Y4E C09 C10 C 0 1 Y N N N N N -27.198 4.241 59.964 1.675 1.607 0.238 C09 Y4E 10 Y4E N07 N1 N 0 1 N N N N N N -28.407 6.459 59.343 -0.151 -0.041 -0.381 N07 Y4E 11 Y4E N14 N2 N 0 1 N N N N N N -30.128 6.060 60.903 1.309 -1.844 -0.696 N14 Y4E 12 Y4E S01 S1 S 0 1 N N N N N N -26.694 6.467 56.402 -2.801 1.483 -0.830 S01 Y4E 13 Y4E S04 S2 S 0 1 N N N N N N -27.449 8.883 60.121 -2.171 -1.167 0.820 S04 Y4E 14 Y4E H101 H1 H 0 0 N N N N N N -26.403 2.366 60.664 3.425 2.739 0.711 H101 Y4E 15 Y4E H111 H2 H 0 0 N N N N N N -28.215 1.974 62.266 4.956 0.841 0.391 H111 Y4E 16 Y4E H121 H3 H 0 0 N N N N N N -30.048 3.614 62.511 4.076 -1.360 -0.268 H121 Y4E 17 Y4E H022 H4 H 0 0 N N N N N N -26.262 8.584 57.566 -2.345 1.761 1.518 H022 Y4E 18 Y4E H021 H5 H 0 0 N N N N N N -28.020 8.327 57.298 -1.013 2.379 0.512 H021 Y4E 19 Y4E H031 H6 H 0 0 N N N N N N -26.307 6.917 59.444 -0.386 0.256 1.712 H031 Y4E 20 Y4E H051 H7 H 0 0 N N N N N N -29.741 9.233 60.677 -1.441 -3.145 -0.436 H051 Y4E 21 Y4E H052 H8 H 0 0 N N N N N N -28.901 8.205 61.886 -0.336 -2.793 0.935 H052 Y4E 22 Y4E H061 H9 H 0 0 N N N N N N -30.299 7.463 59.359 -0.450 -1.542 -1.802 H061 Y4E 23 Y4E H091 H10 H 0 0 N N N N N N -26.395 4.401 59.260 1.005 2.442 0.380 H091 Y4E 24 Y4E H141 H11 H 0 0 N N N N N N -30.318 6.410 61.820 1.671 -2.727 -0.871 H141 Y4E 25 Y4E H011 H12 H 0 0 N N N N N N -26.616 7.109 55.274 -3.382 2.696 -0.854 H011 Y4E 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y4E S01 C02 SING N N 1 Y4E C02 C03 SING N N 2 Y4E C03 N07 SING N N 3 Y4E C03 S04 SING N N 4 Y4E N07 C08 SING N N 5 Y4E N07 C06 SING N N 6 Y4E C09 C08 DOUB Y N 7 Y4E C09 C10 SING Y N 8 Y4E C08 C13 SING Y N 9 Y4E C06 C05 SING N N 10 Y4E C06 N14 SING N N 11 Y4E S04 C05 SING N N 12 Y4E C10 C11 DOUB Y N 13 Y4E N14 C13 SING N N 14 Y4E C13 C12 DOUB Y N 15 Y4E C11 C12 SING Y N 16 Y4E C10 H101 SING N N 17 Y4E C11 H111 SING N N 18 Y4E C12 H121 SING N N 19 Y4E C02 H022 SING N N 20 Y4E C02 H021 SING N N 21 Y4E C03 H031 SING N N 22 Y4E C05 H051 SING N N 23 Y4E C05 H052 SING N N 24 Y4E C06 H061 SING N N 25 Y4E C09 H091 SING N N 26 Y4E N14 H141 SING N N 27 Y4E S01 H011 SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y4E InChI InChI 1.06 "InChI=1S/C10H12N2S2/c13-5-10-12-8-4-2-1-3-7(8)11-9(12)6-14-10/h1-4,9-11,13H,5-6H2/t9-,10-/m1/s1" Y4E InChIKey InChI 1.06 PBXWHODMWKJRIF-NXEZZACHSA-N Y4E SMILES_CANONICAL CACTVS 3.385 "SC[C@H]1SC[C@@H]2Nc3ccccc3N12" Y4E SMILES CACTVS 3.385 "SC[CH]1SC[CH]2Nc3ccccc3N12" Y4E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)N[C@@H]3N2[C@H](SC3)CS" Y4E SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)NC3N2C(SC3)CS" # _pdbx_chem_comp_identifier.comp_id Y4E _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(1~{R},3~{a}~{R})-1,3,3~{a},4-tetrahydro-[1,3]thiazolo[3,4-a]benzimidazol-1-yl]methanethiol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y4E "Create component" 2023-11-20 PDBE Y4E "Initial release" 2024-04-10 RCSB #