data_Y4Q # _chem_comp.id Y4Q _chem_comp.name "6-methyl-2-{2-[(1E)-3-(2-nitrophenyl)prop-1-en-1-yl]hydrazinyl}pyrimidin-4(5H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H15 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-04 _chem_comp.pdbx_modified_date 2023-05-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 301.301 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y4Q _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FO4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y4Q C1 C1 C 0 1 N N N 29.644 -1.000 -30.730 -5.753 0.632 -0.114 C1 Y4Q 1 Y4Q C2 C2 C 0 1 N N N 28.455 -0.546 -28.844 -3.456 0.347 -0.276 C2 Y4Q 2 Y4Q C3 C3 C 0 1 N N N 26.034 -0.358 -26.368 0.107 0.698 -1.043 C3 Y4Q 3 Y4Q C4 C4 C 0 1 N N N 25.744 0.106 -25.413 1.247 0.075 -0.812 C4 Y4Q 4 Y4Q C5 C5 C 0 1 N N N 24.528 -0.064 -24.898 2.535 0.629 -1.366 C5 Y4Q 5 Y4Q C6 C6 C 0 1 Y N N 24.025 0.444 -23.621 3.522 0.823 -0.244 C6 Y4Q 6 Y4Q C7 C7 C 0 1 Y N N 24.834 1.240 -22.806 3.607 2.045 0.398 C7 Y4Q 7 Y4Q C8 C8 C 0 1 Y N N 24.366 1.779 -21.621 4.512 2.223 1.427 C8 Y4Q 8 Y4Q C9 C9 C 0 1 Y N N 23.083 1.524 -21.203 5.332 1.180 1.815 C9 Y4Q 9 Y4Q O1 O1 O 0 1 N N N 20.915 -1.194 -23.406 3.157 -1.956 -0.889 O1 Y4Q 10 Y4Q O2 O2 O 0 1 N N N 31.331 1.473 -28.615 -4.404 -2.351 1.612 O2 Y4Q 11 Y4Q N3 N1 N 0 1 N N N 21.792 -0.556 -23.967 4.242 -1.531 -0.535 N3 Y4Q 12 Y4Q O O3 O 0 1 N N N 21.931 -0.524 -25.178 5.249 -2.184 -0.743 O Y4Q 13 Y4Q C11 C10 C 0 1 Y N N 22.728 0.210 -23.158 4.338 -0.221 0.148 C11 Y4Q 14 Y4Q C10 C11 C 0 1 Y N N 22.250 0.729 -21.969 5.246 -0.041 1.174 C10 Y4Q 15 Y4Q N2 N2 N 0 1 N N N 27.134 -0.112 -26.947 -1.079 0.187 -0.533 N2 Y4Q 16 Y4Q N1 N3 N 0 1 N N N 27.298 -0.733 -28.152 -2.290 0.849 -0.778 N1 Y4Q 17 Y4Q N N4 N 0 1 N N N 28.532 -1.202 -30.010 -4.591 1.024 -0.543 N Y4Q 18 Y4Q N4 N5 N 0 1 N N N 29.359 0.296 -28.302 -3.387 -0.762 0.431 N4 Y4Q 19 Y4Q C12 C12 C 0 1 N N N 30.463 0.522 -29.050 -4.475 -1.328 0.961 C12 Y4Q 20 Y4Q C13 C13 C 0 1 N N N 30.646 -0.142 -30.293 -5.804 -0.637 0.715 C13 Y4Q 21 Y4Q C C14 C 0 1 N N N 29.755 -1.764 -32.014 -7.003 1.414 -0.424 C Y4Q 22 Y4Q H1 H1 H 0 1 N N N 25.351 -1.054 -26.832 0.097 1.605 -1.629 H1 Y4Q 23 Y4Q H2 H2 H 0 1 N N N 26.462 0.713 -24.882 1.258 -0.833 -0.227 H2 Y4Q 24 Y4Q H3 H3 H 0 1 N N N 23.842 0.346 -25.654 2.947 -0.069 -2.095 H3 Y4Q 25 Y4Q H4 H4 H 0 1 N N N 24.398 -1.155 -24.838 2.340 1.586 -1.849 H4 Y4Q 26 Y4Q H5 H5 H 0 1 N N N 25.851 1.440 -23.109 2.966 2.860 0.095 H5 Y4Q 27 Y4Q H6 H6 H 0 1 N N N 25.013 2.403 -21.022 4.579 3.178 1.928 H6 Y4Q 28 Y4Q H7 H7 H 0 1 N N N 22.724 1.945 -20.275 6.039 1.319 2.619 H7 Y4Q 29 Y4Q H8 H8 H 0 1 N N N 21.242 0.517 -21.644 5.884 -0.858 1.480 H8 Y4Q 30 Y4Q H9 H9 H 0 1 N N N 27.876 -0.404 -26.343 -1.070 -0.628 -0.007 H9 Y4Q 31 Y4Q H10 H10 H 0 1 N N N 26.576 -1.318 -28.522 -2.299 1.664 -1.304 H10 Y4Q 32 Y4Q H11 H11 H 0 1 N N N 31.571 -0.733 -30.215 -6.244 -0.394 1.682 H11 Y4Q 33 Y4Q H12 H12 H 0 1 N N N 30.770 0.634 -31.063 -6.466 -1.343 0.214 H12 Y4Q 34 Y4Q H13 H13 H 0 1 N N N 28.860 -2.389 -32.148 -7.171 2.155 0.357 H13 Y4Q 35 Y4Q H14 H14 H 0 1 N N N 29.839 -1.059 -32.854 -6.890 1.916 -1.384 H14 Y4Q 36 Y4Q H15 H15 H 0 1 N N N 30.648 -2.406 -31.983 -7.855 0.734 -0.468 H15 Y4Q 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y4Q C C1 SING N N 1 Y4Q C1 C13 SING N N 2 Y4Q C1 N DOUB N N 3 Y4Q C13 C12 SING N N 4 Y4Q N C2 SING N N 5 Y4Q C12 O2 DOUB N N 6 Y4Q C12 N4 SING N N 7 Y4Q C2 N4 DOUB N N 8 Y4Q C2 N1 SING N N 9 Y4Q N1 N2 SING N N 10 Y4Q N2 C3 SING N N 11 Y4Q C3 C4 DOUB N E 12 Y4Q C4 C5 SING N N 13 Y4Q O N3 DOUB N N 14 Y4Q C5 C6 SING N N 15 Y4Q N3 O1 DOUB N N 16 Y4Q N3 C11 SING N N 17 Y4Q C6 C11 DOUB Y N 18 Y4Q C6 C7 SING Y N 19 Y4Q C11 C10 SING Y N 20 Y4Q C7 C8 DOUB Y N 21 Y4Q C10 C9 DOUB Y N 22 Y4Q C8 C9 SING Y N 23 Y4Q C3 H1 SING N N 24 Y4Q C4 H2 SING N N 25 Y4Q C5 H3 SING N N 26 Y4Q C5 H4 SING N N 27 Y4Q C7 H5 SING N N 28 Y4Q C8 H6 SING N N 29 Y4Q C9 H7 SING N N 30 Y4Q C10 H8 SING N N 31 Y4Q N2 H9 SING N N 32 Y4Q N1 H10 SING N N 33 Y4Q C13 H11 SING N N 34 Y4Q C13 H12 SING N N 35 Y4Q C H13 SING N N 36 Y4Q C H14 SING N N 37 Y4Q C H15 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y4Q SMILES ACDLabs 12.01 "CC1=NC(NN\C=C\Cc2ccccc2N(=O)=O)=NC(=O)C1" Y4Q InChI InChI 1.06 "InChI=1S/C14H15N5O3/c1-10-9-13(20)17-14(16-10)18-15-8-4-6-11-5-2-3-7-12(11)19(21)22/h2-5,7-8,15H,6,9H2,1H3,(H,17,18,20)/b8-4+" Y4Q InChIKey InChI 1.06 RQPQHPRGYAGHMJ-XBXARRHUSA-N Y4Q SMILES_CANONICAL CACTVS 3.385 "CC1=NC(=NC(=O)C1)NN\C=C\Cc2ccccc2[N](=O)=O" Y4Q SMILES CACTVS 3.385 "CC1=NC(=NC(=O)C1)NNC=CCc2ccccc2[N](=O)=O" Y4Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=NC(=NC(=O)C1)NN/C=C/Cc2ccccc2N(=O)=O" Y4Q SMILES "OpenEye OEToolkits" 2.0.7 "CC1=NC(=NC(=O)C1)NNC=CCc2ccccc2N(=O)=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y4Q "SYSTEMATIC NAME" ACDLabs 12.01 "6-methyl-2-{2-[(1E)-3-(2-nitrophenyl)prop-1-en-1-yl]hydrazinyl}pyrimidin-4(5H)-one" Y4Q "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-methyl-2-[2-[(~{E})-3-(2-nitrophenyl)prop-1-enyl]hydrazinyl]-5~{H}-pyrimidin-4-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y4Q "Create component" 2023-01-04 RCSB Y4Q "Initial release" 2023-05-24 RCSB #