data_Y4Y # _chem_comp.id Y4Y _chem_comp.name "6-(aminomethyl)-7-nitro-1,4-dihydroquinoxaline-2,3-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H8 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-05 _chem_comp.pdbx_modified_date 2024-02-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 236.184 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y4Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FPL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y4Y C1 C1 C 0 1 N N N N N N 166.426 127.145 173.285 3.155 0.801 -0.113 C1 Y4Y 1 Y4Y C2 C2 C 0 1 N N N N N N 167.800 127.547 173.368 3.246 -0.681 0.025 C2 Y4Y 2 Y4Y C3 C3 C 0 1 Y N N N N N 166.760 126.508 171.073 0.790 0.618 -0.002 C3 Y4Y 3 Y4Y C4 C4 C 0 1 Y N N N N N 168.086 126.899 171.163 0.876 -0.769 0.137 C4 Y4Y 4 Y4Y C5 C5 C 0 1 Y N N N N N 166.251 125.963 169.838 -0.457 1.234 -0.007 C5 Y4Y 5 Y4Y C6 C6 C 0 1 Y N N N N N 168.960 126.762 170.021 -0.286 -1.524 0.254 C6 Y4Y 6 Y4Y C8 C7 C 0 1 Y N N N N N 168.470 126.233 168.825 -1.518 -0.902 0.233 C8 Y4Y 7 Y4Y O1 O1 O 0 1 N N N N N N 165.594 127.281 174.385 4.162 1.471 -0.222 O1 Y4Y 8 Y4Y O2 O2 O 0 1 N N N N N N 168.317 128.095 174.602 4.329 -1.231 0.030 O2 Y4Y 9 Y4Y N2 N1 N 0 1 N N N N N N 168.596 127.424 172.336 2.115 -1.404 0.144 N2 Y4Y 10 Y4Y N1 N2 N 0 1 N N N N N N 165.940 126.638 172.148 1.941 1.390 -0.121 N1 Y4Y 11 Y4Y C7 C8 C 0 1 Y N N N N N 167.100 125.829 168.730 -1.602 0.476 0.124 C7 Y4Y 12 Y4Y N3 N3 N 0 1 N N N N N N 166.563 125.261 167.449 -2.928 1.134 0.103 N3 Y4Y 13 Y4Y O3 O3 O 0 1 N N N N N N 166.504 123.840 167.259 -3.005 2.346 0.008 O3 Y4Y 14 Y4Y O5 O4 O 0 1 N N N N N N 166.115 126.128 166.435 -3.942 0.464 0.182 O5 Y4Y 15 Y4Y C C9 C 0 1 N N N N N N 169.410 126.090 167.615 -2.775 -1.724 0.361 C Y4Y 16 Y4Y N17 N4 N 0 1 N N N N N N 168.909 126.872 166.469 -3.363 -1.929 -0.970 N17 Y4Y 17 Y4Y H1 H1 H 0 1 N N N N N N 165.217 125.659 169.767 -0.528 2.306 -0.114 H1 Y4Y 18 Y4Y H2 H2 H 0 1 N N N N N N 169.993 127.069 170.092 -0.224 -2.596 0.361 H2 Y4Y 19 Y4Y H3 H3 H 0 1 N N N N N N 169.554 127.704 172.395 2.164 -2.369 0.234 H3 Y4Y 20 Y4Y H4 H4 H 0 1 N N N N N N 164.982 126.357 172.089 1.871 2.353 -0.217 H4 Y4Y 21 Y4Y H5 H5 H 0 1 N N N N N N 169.471 125.030 167.329 -2.535 -2.690 0.804 H5 Y4Y 22 Y4Y H6 H6 H 0 1 N N N N N N 170.411 126.454 167.890 -3.489 -1.199 0.996 H6 Y4Y 23 Y4Y H7 H7 H 0 1 N N N N N N 169.533 126.766 165.694 -4.208 -2.477 -0.912 H7 Y4Y 24 Y4Y H8 H8 H 0 1 N N N N N N 168.000 126.543 166.213 -3.535 -1.047 -1.429 H8 Y4Y 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y4Y O5 N3 DOUB N N 1 Y4Y N17 C SING N N 2 Y4Y O3 N3 DOUB N N 3 Y4Y N3 C7 SING N N 4 Y4Y C C8 SING N N 5 Y4Y C7 C8 DOUB Y N 6 Y4Y C7 C5 SING Y N 7 Y4Y C8 C6 SING Y N 8 Y4Y C5 C3 DOUB Y N 9 Y4Y C6 C4 DOUB Y N 10 Y4Y C3 C4 SING Y N 11 Y4Y C3 N1 SING N N 12 Y4Y C4 N2 SING N N 13 Y4Y N1 C1 SING N N 14 Y4Y N2 C2 SING N N 15 Y4Y C1 C2 SING N N 16 Y4Y C1 O1 DOUB N N 17 Y4Y C2 O2 DOUB N N 18 Y4Y C5 H1 SING N N 19 Y4Y C6 H2 SING N N 20 Y4Y N2 H3 SING N N 21 Y4Y N1 H4 SING N N 22 Y4Y C H5 SING N N 23 Y4Y C H6 SING N N 24 Y4Y N17 H7 SING N N 25 Y4Y N17 H8 SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y4Y SMILES ACDLabs 12.01 "O=N(=O)c1cc2NC(=O)C(=O)Nc2cc1CN" Y4Y InChI InChI 1.06 "InChI=1S/C9H8N4O4/c10-3-4-1-5-6(2-7(4)13(16)17)12-9(15)8(14)11-5/h1-2H,3,10H2,(H,11,14)(H,12,15)" Y4Y InChIKey InChI 1.06 DWQWOEGFPYFGFJ-UHFFFAOYSA-N Y4Y SMILES_CANONICAL CACTVS 3.385 "NCc1cc2NC(=O)C(=O)Nc2cc1[N](=O)=O" Y4Y SMILES CACTVS 3.385 "NCc1cc2NC(=O)C(=O)Nc2cc1[N](=O)=O" Y4Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(c(cc2c1NC(=O)C(=O)N2)N(=O)=O)CN" Y4Y SMILES "OpenEye OEToolkits" 2.0.7 "c1c(c(cc2c1NC(=O)C(=O)N2)N(=O)=O)CN" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y4Y "SYSTEMATIC NAME" ACDLabs 12.01 "6-(aminomethyl)-7-nitro-1,4-dihydroquinoxaline-2,3-dione" Y4Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-(aminomethyl)-7-nitro-1,4-dihydroquinoxaline-2,3-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y4Y "Create component" 2023-01-05 RCSB Y4Y "Initial release" 2024-02-28 RCSB #