data_Y51 # _chem_comp.id Y51 _chem_comp.name "(1R,2S)-2-((S)-2-(((((1S,2S,4S)-bicyclo[2.2.1]hept-5-en-2-yl)methoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H35 N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-03 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 501.594 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y51 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LKX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y51 C21 C1 C 0 1 N N S N N N 8.240 28.654 24.426 8.060 0.451 -0.906 C21 Y51 1 Y51 C14 C2 C 0 1 N N R N N N 8.854 18.376 28.571 -3.731 1.185 -1.612 C14 Y51 2 Y51 C13 C3 C 0 1 N N N N N N 6.418 21.836 27.257 -3.866 -3.120 -0.941 C13 Y51 3 Y51 C12 C4 C 0 1 N N N N N N 5.441 22.631 26.408 -4.416 -4.447 -0.372 C12 Y51 4 Y51 C16 C5 C 0 1 N N S N N N 8.880 26.390 24.988 6.173 -1.103 -0.843 C16 Y51 5 Y51 C15 C6 C 0 1 N N N N N N 9.047 25.729 26.339 4.996 -0.966 0.125 C15 Y51 6 Y51 C1 C7 C 0 1 N N N N N N 10.578 23.912 26.354 2.675 -0.410 0.098 C1 Y51 7 Y51 C10 C8 C 0 1 N N S N N N 7.235 21.042 26.243 -4.046 -2.163 0.260 C10 Y51 8 Y51 C11 C9 C 0 1 N N N N N N 6.342 21.002 25.017 -5.167 -2.783 1.064 C11 Y51 9 Y51 C17 C10 C 0 1 N N S N N N 10.042 27.358 24.598 7.449 -1.596 -0.089 C17 Y51 10 Y51 C18 C11 C 0 1 N N N N N N 9.353 28.162 23.493 8.573 -1.030 -1.032 C18 Y51 11 Y51 C19 C12 C 0 1 N N N N N N 10.129 28.397 25.673 7.584 -0.624 1.090 C19 Y51 12 Y51 C2 C13 C 0 1 N N S N N N 11.630 22.090 27.552 0.304 0.132 0.248 C2 Y51 13 Y51 C20 C14 C 0 1 N N N N N N 9.069 29.176 25.561 7.937 0.555 0.619 C20 Y51 14 Y51 C22 C15 C 0 1 N N N N N N 7.645 27.303 24.905 6.587 0.283 -1.396 C22 Y51 15 Y51 C3 C16 C 0 1 N N N N N N 12.780 21.857 28.529 0.266 1.548 0.827 C3 Y51 16 Y51 C4 C17 C 0 1 N N N N N N 14.153 22.314 28.038 1.404 1.716 1.836 C4 Y51 17 Y51 C5 C18 C 0 1 N N N N N N 15.217 22.073 29.102 1.444 3.166 2.322 C5 Y51 18 Y51 C6 C19 C 0 1 N N N N N N 14.530 21.621 26.740 1.172 0.785 3.027 C6 Y51 19 Y51 C7 C20 C 0 1 N N N N N N 10.322 21.536 28.123 -0.887 -0.075 -0.652 C7 Y51 20 Y51 C8 C21 C 0 1 N N S N N N 8.616 19.755 27.974 -3.293 -0.160 -1.030 C8 Y51 21 Y51 C9 C22 C 0 1 N N N N N N 7.689 19.680 26.758 -4.442 -0.766 -0.223 C9 Y51 22 Y51 N1 N1 N 0 1 N N N N N N 11.522 23.500 27.216 1.536 -0.047 -0.525 N1 Y51 23 Y51 N2 N2 N 0 1 N N N N N N 9.889 20.381 27.609 -2.135 0.041 -0.155 N2 Y51 24 Y51 N3 N3 N 0 1 N N N N N N 5.299 21.788 25.228 -5.356 -4.060 0.686 N3 Y51 25 Y51 O1 O1 O 0 1 N N N N N N 9.918 23.172 25.664 2.680 -0.590 1.300 O1 Y51 26 Y51 O2 O2 O 0 1 N N N N N N 6.566 20.366 23.968 -5.803 -2.212 1.926 O2 Y51 27 Y51 O3 O3 O 0 1 N N N N N N 9.593 18.440 29.784 -2.701 1.696 -2.460 O3 Y51 28 Y51 O4 O4 O 0 1 N N N N N N 9.713 22.153 28.994 -0.723 -0.344 -1.823 O4 Y51 29 Y51 O5 O5 O 0 1 N N N N N N 10.405 25.238 26.457 3.807 -0.574 -0.612 O5 Y51 30 Y51 H1 H1 H 0 1 N N N N N N 7.520 29.357 23.982 8.647 1.227 -1.397 H1 Y51 31 Y51 S1 S1 S 0 1 N Y N N N N 9.369 17.759 27.865 -4.039 2.357 -0.262 S1 Y51 32 Y51 H3 H3 H 0 1 N N N N N N 7.857 17.986 28.826 -4.645 1.050 -2.191 H3 Y51 33 Y51 H4 H4 H 0 1 N N N N N N 5.882 21.161 27.940 -2.814 -3.216 -1.209 H4 Y51 34 Y51 H6 H6 H 0 1 N N N N N N 5.852 23.617 26.146 -4.934 -5.005 -1.151 H6 Y51 35 Y51 H7 H7 H 0 1 N N N N N N 4.478 22.760 26.924 -3.604 -5.044 0.043 H7 Y51 36 Y51 H8 H8 H 0 1 N N N N N N 8.799 25.613 24.214 5.922 -1.784 -1.656 H8 Y51 37 Y51 H9 H9 H 0 1 N N N N N N 8.849 26.461 27.135 4.819 -1.922 0.618 H9 Y51 38 Y51 H10 H10 H 0 1 N N N N N N 8.342 24.890 26.429 5.227 -0.208 0.873 H10 Y51 39 Y51 H11 H11 H 0 1 N N N N N N 8.132 21.628 25.994 -3.131 -2.116 0.851 H11 Y51 40 Y51 H12 H12 H 0 1 N N N N N N 10.985 26.868 24.315 7.487 -2.658 0.153 H12 Y51 41 Y51 H13 H13 H 0 1 N N N N N N 8.984 27.539 22.665 8.495 -1.413 -2.050 H13 Y51 42 Y51 H14 H14 H 0 1 N N N N N N 9.976 28.974 23.091 9.572 -1.163 -0.618 H14 Y51 43 Y51 H15 H15 H 0 1 N N N N N N 10.916 28.492 26.407 7.419 -0.866 2.130 H15 Y51 44 Y51 H17 H17 H 0 1 N N N N N N 11.855 21.528 26.633 0.276 -0.594 1.060 H17 Y51 45 Y51 H18 H18 H 0 1 N N N N N N 8.840 30.034 26.176 8.109 1.444 1.208 H18 Y51 46 Y51 H20 H20 H 0 1 N N N N N N 7.165 27.409 25.889 5.953 1.066 -0.980 H20 Y51 47 Y51 H21 H21 H 0 1 N N N N N N 6.914 26.914 24.181 6.542 0.289 -2.485 H21 Y51 48 Y51 H22 H22 H 0 1 N N N N N N 12.553 22.400 29.458 0.384 2.273 0.022 H22 Y51 49 Y51 H23 H23 H 0 1 N N N N N N 12.835 20.779 28.739 -0.689 1.710 1.327 H23 Y51 50 Y51 H24 H24 H 0 1 N N N N N N 14.102 23.396 27.846 2.352 1.467 1.359 H24 Y51 51 Y51 H25 H25 H 0 1 N N N N N N 14.927 22.582 30.033 0.496 3.416 2.799 H25 Y51 52 Y51 H26 H26 H 0 1 N N N N N N 15.311 20.993 29.288 2.254 3.287 3.041 H26 Y51 53 Y51 H27 H27 H 0 1 N N N N N N 16.181 22.470 28.752 1.609 3.830 1.474 H27 Y51 54 Y51 H28 H28 H 0 1 N N N N N N 15.521 21.969 26.412 1.144 -0.248 2.681 H28 Y51 55 Y51 H29 H29 H 0 1 N N N N N N 14.558 20.533 26.900 1.983 0.905 3.746 H29 Y51 56 Y51 H30 H30 H 0 1 N N N N N N 13.784 21.859 25.968 0.224 1.034 3.504 H30 Y51 57 Y51 H31 H31 H 0 1 N N N N N N 8.123 20.375 28.737 -3.022 -0.836 -1.841 H31 Y51 58 Y51 H32 H32 H 0 1 N N N N N N 6.797 19.100 27.038 -5.330 -0.837 -0.852 H32 Y51 59 Y51 H33 H33 H 0 1 N N N N N N 8.223 19.163 25.947 -4.657 -0.131 0.637 H33 Y51 60 Y51 H34 H34 H 0 1 N N N N N N 12.149 24.162 27.626 1.533 0.097 -1.484 H34 Y51 61 Y51 H35 H35 H 0 1 N N N N N N 10.467 19.918 26.937 -2.266 0.257 0.781 H35 Y51 62 Y51 H36 H36 H 0 1 N N N N N N 4.493 21.802 24.636 -6.028 -4.649 1.064 H36 Y51 63 Y51 H37 H37 H 0 1 N N N N N N 9.721 17.562 30.124 -1.857 1.841 -2.011 H37 Y51 64 Y51 O6 O6 O 0 1 N Y N N N N ? ? ? -5.185 1.969 0.484 O6 Y51 65 Y51 O7 O7 O 0 1 N Y N N N N ? ? ? -2.823 2.698 0.389 O7 Y51 66 Y51 O8 O8 O 0 1 N Y N N N N ? ? ? -4.464 3.640 -0.962 O8 Y51 67 Y51 H2 H2 H 0 1 N N N N N N 7.066 22.508 27.839 -4.456 -2.788 -1.796 H2 Y51 68 Y51 H5 H5 H 0 1 N Y N N N N ? ? ? -4.665 4.369 -0.359 H5 Y51 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y51 C18 C21 SING N N 1 Y51 C18 C17 SING N N 2 Y51 O2 C11 DOUB N N 3 Y51 C21 C22 SING N N 4 Y51 C21 C20 SING N N 5 Y51 C17 C16 SING N N 6 Y51 C17 C19 SING N N 7 Y51 C22 C16 SING N N 8 Y51 C16 C15 SING N N 9 Y51 C11 N3 SING N N 10 Y51 C11 C10 SING N N 11 Y51 N3 C12 SING N N 12 Y51 C20 C19 DOUB N N 13 Y51 O1 C1 DOUB N N 14 Y51 C10 C9 SING N N 15 Y51 C10 C13 SING N N 16 Y51 C15 O5 SING N N 17 Y51 C1 O5 SING N N 18 Y51 C1 N1 SING N N 19 Y51 C12 C13 SING N N 20 Y51 C6 C4 SING N N 21 Y51 C9 C8 SING N N 22 Y51 N1 C2 SING N N 23 Y51 C2 C7 SING N N 24 Y51 C2 C3 SING N N 25 Y51 N2 C8 SING N N 26 Y51 N2 C7 SING N N 27 Y51 C8 C14 SING N N 28 Y51 C4 C3 SING N N 29 Y51 C4 C5 SING N N 30 Y51 C7 O4 DOUB N N 31 Y51 C14 O3 SING N N 32 Y51 C21 H1 SING N N 33 Y51 C14 S1 SING N N 34 Y51 C14 H3 SING N N 35 Y51 C13 H4 SING N N 36 Y51 C12 H6 SING N N 37 Y51 C12 H7 SING N N 38 Y51 C16 H8 SING N N 39 Y51 C15 H9 SING N N 40 Y51 C15 H10 SING N N 41 Y51 C10 H11 SING N N 42 Y51 C17 H12 SING N N 43 Y51 C18 H13 SING N N 44 Y51 C18 H14 SING N N 45 Y51 C19 H15 SING N N 46 Y51 C2 H17 SING N N 47 Y51 C20 H18 SING N N 48 Y51 C22 H20 SING N N 49 Y51 C22 H21 SING N N 50 Y51 C3 H22 SING N N 51 Y51 C3 H23 SING N N 52 Y51 C4 H24 SING N N 53 Y51 C5 H25 SING N N 54 Y51 C5 H26 SING N N 55 Y51 C5 H27 SING N N 56 Y51 C6 H28 SING N N 57 Y51 C6 H29 SING N N 58 Y51 C6 H30 SING N N 59 Y51 C8 H31 SING N N 60 Y51 C9 H32 SING N N 61 Y51 C9 H33 SING N N 62 Y51 N1 H34 SING N N 63 Y51 N2 H35 SING N N 64 Y51 N3 H36 SING N N 65 Y51 O3 H37 SING N N 66 Y51 S1 O6 DOUB N N 67 Y51 S1 O7 DOUB N N 68 Y51 S1 O8 SING N N 69 Y51 C13 H2 SING N N 70 Y51 O8 H5 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y51 InChI InChI 1.03 "InChI=1S/C22H35N3O8S/c1-12(2)7-17(25-22(29)33-11-16-9-13-3-4-14(16)8-13)20(27)24-18(21(28)34(30,31)32)10-15-5-6-23-19(15)26/h3-4,12-18,21,28H,5-11H2,1-2H3,(H,23,26)(H,24,27)(H,25,29)(H,30,31,32)/t13-,14+,15-,16+,17-,18-,21+/m0/s1" Y51 InChIKey InChI 1.03 WZJYVJHLXCYWFV-NFFJHMNLSA-N Y51 SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@H]1C[C@@H]2C[C@H]1C=C2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)[S](O)(=O)=O" Y51 SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1C[CH]2C[CH]1C=C2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O" Y51 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@H]2C[C@@H]3C[C@H]2C=C3" Y51 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CC3CC2C=C3" # _pdbx_chem_comp_identifier.comp_id Y51 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[(2~{S})-2-[[(1~{S},2~{S},4~{S})-2-bicyclo[2.2.1]hept-5-enyl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y51 "Create component" 2021-02-03 RCSB Y51 "Other modification" 2021-02-08 RCSB Y51 "Modify name" 2021-02-09 RCSB Y51 "Initial release" 2021-02-17 RCSB Y51 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id Y51 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C14 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #