data_Y59 # _chem_comp.id Y59 _chem_comp.name "7-(4,7-diazaspiro[2.5]octan-7-yl)-2-(2,8-dimethylimidazo[1,2-b]pyridazin-6-yl)-1~{H}-pyrido[1,2-a]pyrimidin-4-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H24 N7 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-21 _chem_comp.pdbx_modified_date 2024-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 402.472 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y59 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 8R62 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y59 C8 C1 C 0 1 Y N N N N N 26.052 18.432 33.203 ? ? ? C8 Y59 1 Y59 O17 O1 O 0 1 N N N N N N 33.942 20.738 31.388 ? ? ? O17 Y59 2 Y59 C7 C2 C 0 1 Y N N N N N 27.222 19.146 33.165 ? ? ? C7 Y59 3 Y59 C2 C3 C 0 1 Y N N N N N 29.372 16.740 30.637 ? ? ? C2 Y59 4 Y59 C1 C4 C 0 1 Y N N N N N 30.001 17.910 31.164 ? ? ? C1 Y59 5 Y59 C3 C5 C 0 1 Y N N N N N 28.059 16.417 31.021 ? ? ? C3 Y59 6 Y59 C4 C6 C 0 1 Y N N N N N 27.449 17.299 31.918 ? ? ? C4 Y59 7 Y59 N5 N1 N 0 1 Y N N N N N 28.084 18.422 32.370 ? ? ? N5 Y59 8 Y59 N6 N2 N 0 1 Y N N N N N 29.349 18.745 32.008 ? ? ? N6 Y59 9 Y59 N9 N3 N 0 1 Y N N N N N 26.160 17.305 32.418 ? ? ? N9 Y59 10 Y59 C10 C7 C 0 1 Y N N N N N 36.167 18.061 28.936 ? ? ? C10 Y59 11 Y59 C11 C8 C 0 1 Y N N N N N 35.464 16.943 28.460 ? ? ? C11 Y59 12 Y59 C12 C9 C 0 1 Y N N N N N 34.091 16.791 28.726 ? ? ? C12 Y59 13 Y59 C13 C10 C 0 1 Y N N N N N 33.390 17.728 29.502 ? ? ? C13 Y59 14 Y59 N14 N4 N 0 1 Y N N N N N 34.059 18.846 30.034 ? ? ? N14 Y59 15 Y59 C15 C11 C 0 1 Y N N N N N 35.428 19.012 29.647 ? ? ? C15 Y59 16 Y59 C16 C12 C 0 1 N N N N N N 33.451 19.696 30.942 ? ? ? C16 Y59 17 Y59 C18 C13 C 0 1 N N N N N N 32.089 19.282 31.302 ? ? ? C18 Y59 18 Y59 C19 C14 C 0 1 N N N N N N 31.386 18.190 30.757 ? ? ? C19 Y59 19 Y59 N20 N5 N 0 1 N N N N N N 32.053 17.479 29.745 ? ? ? N20 Y59 20 Y59 C21 C15 C 0 1 N N N N N N 39.571 18.767 30.020 ? ? ? C21 Y59 21 Y59 C22 C16 C 0 1 N N N N N N 38.399 19.336 29.176 ? ? ? C22 Y59 22 Y59 N23 N6 N 0 1 N N N N N N 37.565 18.184 28.702 ? ? ? N23 Y59 23 Y59 C24 C17 C 0 1 N N N N N N 38.332 17.004 28.191 ? ? ? C24 Y59 24 Y59 C25 C18 C 0 1 N N N N N N 39.828 17.300 27.962 ? ? ? C25 Y59 25 Y59 N26 N7 N 0 1 N N N N N N 40.518 18.028 29.099 ? ? ? N26 Y59 26 Y59 C27 C19 C 0 1 N N N N N N 40.664 16.282 27.225 ? ? ? C27 Y59 27 Y59 C28 C20 C 0 1 N N N N N N 40.302 17.581 26.561 ? ? ? C28 Y59 28 Y59 C29 C21 C 0 1 N N N N N N 27.331 15.208 30.464 ? ? ? C29 Y59 29 Y59 C30 C22 C 0 1 N N N N N N 24.849 18.875 33.937 ? ? ? C30 Y59 30 Y59 H7 H1 H 0 1 N N N N N N 27.426 20.085 33.658 ? ? ? H7 Y59 31 Y59 H2 H2 H 0 1 N N N N N N 29.905 16.105 29.945 ? ? ? H2 Y59 32 Y59 H11 H3 H 0 1 N N N N N N 35.983 16.192 27.883 ? ? ? H11 Y59 33 Y59 H12 H4 H 0 1 N N N N N N 33.566 15.937 28.325 ? ? ? H12 Y59 34 Y59 H15 H5 H 0 1 N N N N N N 35.922 19.932 29.922 ? ? ? H15 Y59 35 Y59 H18 H6 H 0 1 N N N N N N 31.580 19.868 32.053 ? ? ? H18 Y59 36 Y59 H20 H7 H 0 1 N N N N N N 31.562 16.796 29.203 ? ? ? H20 Y59 37 Y59 H21B H8 H 0 0 N N N N N N 39.178 18.075 30.780 ? ? ? H21B Y59 38 Y59 H21A H9 H 0 0 N N N N N N 40.105 19.591 30.516 ? ? ? H21A Y59 39 Y59 H22B H10 H 0 0 N N N N N N 38.796 19.889 28.312 ? ? ? H22B Y59 40 Y59 H22A H11 H 0 0 N N N N N N 37.787 20.010 29.794 ? ? ? H22A Y59 41 Y59 H24B H12 H 0 0 N N N N N N 37.889 16.687 27.235 ? ? ? H24B Y59 42 Y59 H24A H13 H 0 0 N N N N N N 38.246 16.188 28.924 ? ? ? H24A Y59 43 Y59 H26B H14 H 0 0 N N N N N N 41.024 17.357 29.641 ? ? ? H26B Y59 44 Y59 H27A H16 H 0 0 N N N N N N 40.208 15.342 26.880 ? ? ? H27A Y59 45 Y59 H27B H17 H 0 0 N N N N N N 41.702 16.094 27.536 ? ? ? H27B Y59 46 Y59 H28B H18 H 0 0 N N N N N N 41.076 18.343 26.385 ? ? ? H28B Y59 47 Y59 H28A H19 H 0 0 N N N N N N 39.582 17.591 25.729 ? ? ? H28A Y59 48 Y59 H29B H20 H 0 0 N N N N N N 27.510 14.339 31.115 ? ? ? H29B Y59 49 Y59 H29A H21 H 0 0 N N N N N N 26.252 15.417 30.421 ? ? ? H29A Y59 50 Y59 H29C H22 H 0 0 N N N N N N 27.703 14.991 29.452 ? ? ? H29C Y59 51 Y59 H30C H23 H 0 0 N N N N N N 24.030 18.161 33.765 ? ? ? H30C Y59 52 Y59 H30B H24 H 0 0 N N N N N N 25.073 18.923 35.013 ? ? ? H30B Y59 53 Y59 H30A H25 H 0 0 N N N N N N 24.548 19.871 33.580 ? ? ? H30A Y59 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y59 C28 C27 SING N N 1 Y59 C28 C25 SING N N 2 Y59 C27 C25 SING N N 3 Y59 C25 C24 SING N N 4 Y59 C25 N26 SING N N 5 Y59 C24 N23 SING N N 6 Y59 C11 C12 DOUB Y N 7 Y59 C11 C10 SING Y N 8 Y59 N23 C10 SING N N 9 Y59 N23 C22 SING N N 10 Y59 C12 C13 SING Y N 11 Y59 C10 C15 DOUB Y N 12 Y59 N26 C21 SING N N 13 Y59 C22 C21 SING N N 14 Y59 C13 N20 SING N N 15 Y59 C13 N14 DOUB Y N 16 Y59 C15 N14 SING Y N 17 Y59 N20 C19 SING N N 18 Y59 N14 C16 SING N N 19 Y59 C29 C3 SING N N 20 Y59 C2 C3 DOUB Y N 21 Y59 C2 C1 SING Y N 22 Y59 C19 C1 SING N N 23 Y59 C19 C18 DOUB N N 24 Y59 C16 C18 SING N N 25 Y59 C16 O17 DOUB N N 26 Y59 C3 C4 SING Y N 27 Y59 C1 N6 DOUB Y N 28 Y59 C4 N5 SING Y N 29 Y59 C4 N9 DOUB Y N 30 Y59 N6 N5 SING Y N 31 Y59 N5 C7 SING Y N 32 Y59 N9 C8 SING Y N 33 Y59 C7 C8 DOUB Y N 34 Y59 C8 C30 SING N N 35 Y59 C7 H7 SING N N 36 Y59 C2 H2 SING N N 37 Y59 C11 H11 SING N N 38 Y59 C12 H12 SING N N 39 Y59 C15 H15 SING N N 40 Y59 C18 H18 SING N N 41 Y59 N20 H20 SING N N 42 Y59 C21 H21B SING N N 43 Y59 C21 H21A SING N N 44 Y59 C22 H22B SING N N 45 Y59 C22 H22A SING N N 46 Y59 C24 H24B SING N N 47 Y59 C24 H24A SING N N 48 Y59 N26 H26B SING N N 49 Y59 C27 H27A SING N N 50 Y59 C27 H27B SING N N 51 Y59 C28 H28B SING N N 52 Y59 C28 H28A SING N N 53 Y59 C29 H29B SING N N 54 Y59 C29 H29A SING N N 55 Y59 C29 H29C SING N N 56 Y59 C30 H30C SING N N 57 Y59 C30 H30B SING N N 58 Y59 C30 H30A SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y59 InChI InChI 1.06 "InChI=1S/C22H24N7O/c1-14-9-18(26-29-11-15(2)24-21(14)29)17-10-20(30)28-12-16(3-4-19(28)25-17)27-8-7-23-22(13-27)5-6-22/h3-4,9-12,23H,5-8,13H2,1-2H3,(H,25,30)" Y59 InChIKey InChI 1.06 WUBACWPUEMOWBL-UHFFFAOYSA-N Y59 SMILES_CANONICAL CACTVS 3.385 "Cc1cn2nc(cc(C)c2n1)C3=CC(=O)[n]4cc(ccc4N3)N5CCNC6(CC6)C5" Y59 SMILES CACTVS 3.385 "Cc1cn2nc(cc(C)c2n1)C3=CC(=O)[n]4cc(ccc4N3)N5CCNC6(CC6)C5" Y59 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(nn2c1nc(c2)C)C3=CC(=O)[N]4=C(N3)C=CC(=C4)N5CCNC6(C5)CC6" Y59 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(nn2c1nc(c2)C)C3=CC(=O)[N]4=C(N3)C=CC(=C4)N5CCNC6(C5)CC6" # _pdbx_chem_comp_identifier.comp_id Y59 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-(4,7-diazaspiro[2.5]octan-7-yl)-2-(2,8-dimethylimidazo[1,2-b]pyridazin-6-yl)-1~{H}-pyrido[1,2-a]pyrimidin-4-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y59 "Create component" 2023-11-21 PDBE Y59 "Initial release" 2024-03-06 RCSB #