data_Y5D # _chem_comp.id Y5D _chem_comp.name "{1-(ethylsulfonyl)-3-[4-(2-{[3-fluoro-4-(1-methylpiperidin-4-yl)phenyl]amino}-7H-pyrrolo[2,3-d]pyrimidin-4-yl)-1H-pyrazol-1-yl]azetidin-3-yl}acetonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H32 F N9 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-04 _chem_comp.pdbx_modified_date 2022-01-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 577.676 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y5D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LL4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y5D C10 C1 C 0 1 Y N N 11.713 -16.514 5.496 -3.076 -0.769 0.809 C10 Y5D 1 Y5D C13 C2 C 0 1 Y N N 10.434 -19.415 5.833 -0.088 -2.399 -0.713 C13 Y5D 2 Y5D C15 C3 C 0 1 Y N N 11.752 -21.226 6.043 0.688 -4.289 -1.663 C15 Y5D 3 Y5D C17 C4 C 0 1 Y N N 9.677 -20.548 6.154 1.320 -2.364 -0.699 C17 Y5D 4 Y5D C21 C5 C 0 1 Y N N 5.425 -18.162 6.122 3.288 0.860 0.771 C21 Y5D 5 Y5D C22 C6 C 0 1 Y N N 4.082 -18.444 6.386 3.940 0.339 -0.340 C22 Y5D 6 Y5D C24 C7 C 0 1 Y N N 3.507 -16.152 5.924 6.047 1.005 0.583 C24 Y5D 7 Y5D C26 C8 C 0 1 N N N 1.967 -14.853 7.116 7.935 1.882 -0.768 C26 Y5D 8 Y5D C04 C9 C 0 1 N N N 14.130 -14.862 4.682 -5.622 0.955 1.448 C04 Y5D 9 Y5D C05 C10 C 0 1 N N N 12.927 -14.344 5.365 -5.541 -0.562 1.197 C05 Y5D 10 Y5D C06 C11 C 0 1 N N N 13.133 -13.902 6.820 -5.770 -1.407 2.451 C06 Y5D 11 Y5D C07 C12 C 0 1 N N N 13.315 -15.088 7.762 -5.631 -2.833 2.114 C07 Y5D 12 Y5D C11 C13 C 0 1 Y N N 10.385 -16.857 5.380 -2.277 -1.302 -0.164 C11 Y5D 13 Y5D C12 C14 C 0 1 Y N N 9.728 -18.211 5.638 -0.797 -1.313 -0.173 C12 Y5D 14 Y5D C14 C15 C 0 1 Y N N 11.778 -19.862 5.737 -0.458 -3.663 -1.347 C14 Y5D 15 Y5D C19 C16 C 0 1 Y N N 7.764 -19.279 6.142 1.221 -0.300 0.326 C19 Y5D 16 Y5D C23 C17 C 0 1 Y N N 3.108 -17.442 6.275 5.316 0.414 -0.431 C23 Y5D 17 Y5D C25 C18 C 0 1 N N N 2.578 -14.922 5.803 7.548 1.084 0.481 C25 Y5D 18 Y5D C27 C19 C 0 1 N N N 1.010 -13.656 7.227 9.459 1.907 -0.900 C27 Y5D 19 Y5D C29 C20 C 0 1 N N N 0.330 -11.877 6.167 9.448 -0.135 -2.201 C29 Y5D 20 Y5D C30 C21 C 0 1 N N N 0.818 -13.543 4.833 9.648 -0.239 0.210 C30 Y5D 21 Y5D C31 C22 C 0 1 N N N 1.643 -14.832 4.713 8.129 -0.328 0.375 C31 Y5D 22 Y5D C32 C23 C 0 1 Y N N 4.847 -15.907 5.665 5.400 1.531 1.690 C32 Y5D 23 Y5D C34 C24 C 0 1 Y N N 5.810 -16.890 5.759 4.023 1.459 1.786 C34 Y5D 24 Y5D C36 C25 C 0 1 Y N N 9.645 -15.697 5.202 -3.121 -1.841 -1.157 C36 Y5D 25 Y5D C38 C26 C 0 1 N N N 12.876 -13.167 4.500 -6.801 -0.384 0.330 C38 Y5D 26 Y5D C39 C27 C 0 1 N N N 15.682 -11.956 2.275 -8.150 3.045 -0.371 C39 Y5D 27 Y5D C40 C28 C 0 1 N N N 14.935 -10.783 2.914 -8.507 4.171 -1.343 C40 Y5D 28 Y5D F33 F1 F 0 1 N N N 5.275 -14.650 5.336 6.116 2.114 2.676 F33 Y5D 29 Y5D N03 N1 N 0 1 N N N 14.147 -13.609 3.906 -6.380 1.023 0.184 N03 Y5D 30 Y5D N08 N2 N 0 1 N N N 13.430 -16.010 8.440 -5.524 -3.934 1.853 N08 Y5D 31 Y5D N09 N3 N 0 1 Y N N 11.769 -15.197 5.279 -4.355 -0.972 0.440 N09 Y5D 32 Y5D N16 N4 N 0 1 Y N N 10.500 -21.600 6.287 1.758 -3.524 -1.276 N16 Y5D 33 Y5D N18 N5 N 0 1 Y N N 8.328 -20.454 6.331 1.926 -1.302 -0.173 N18 Y5D 34 Y5D N20 N6 N 0 1 N N N 6.349 -19.268 6.281 1.895 0.786 0.864 N20 Y5D 35 Y5D N28 N7 N 0 1 N N N 1.087 -12.821 6.052 9.966 0.532 -0.999 N28 Y5D 36 Y5D N35 N8 N 0 1 Y N N 8.422 -18.180 5.812 -0.105 -0.293 0.332 N35 Y5D 37 Y5D N37 N9 N 0 1 Y N N 10.511 -14.673 5.114 -4.358 -1.637 -0.791 N37 Y5D 38 Y5D O01 O1 O 0 1 N N N 15.219 -14.598 1.793 -6.908 1.488 -2.146 O01 Y5D 39 Y5D O41 O2 O 0 1 N N N 13.380 -13.171 1.584 -5.522 3.061 -0.832 O41 Y5D 40 Y5D S02 S1 S 0 1 N N N 14.600 -13.407 2.310 -6.650 2.204 -0.945 S02 Y5D 41 Y5D H101 H1 H 0 0 N N N 12.539 -17.174 5.717 -2.742 -0.279 1.711 H101 Y5D 42 Y5D H151 H2 H 0 0 N N N 12.615 -21.875 6.076 0.755 -5.254 -2.144 H151 Y5D 43 Y5D H221 H3 H 0 0 N N N 3.792 -19.443 6.678 3.371 -0.124 -1.132 H221 Y5D 44 Y5D H261 H4 H 0 0 N N N 1.403 -15.780 7.298 7.501 1.410 -1.650 H261 Y5D 45 Y5D H262 H5 H 0 0 N N N 2.758 -14.750 7.874 7.560 2.902 -0.680 H262 Y5D 46 Y5D H042 H6 H 0 0 N N N 13.963 -15.770 4.084 -6.208 1.224 2.327 H042 Y5D 47 Y5D H041 H7 H 0 0 N N N 15.002 -15.009 5.336 -4.656 1.459 1.411 H041 Y5D 48 Y5D H061 H8 H 0 0 N N N 14.029 -13.266 6.874 -5.034 -1.140 3.209 H061 Y5D 49 Y5D H062 H9 H 0 0 N N N 12.254 -13.325 7.143 -6.773 -1.221 2.837 H062 Y5D 50 Y5D H141 H10 H 0 0 N N N 12.644 -19.270 5.480 -1.459 -4.024 -1.525 H141 Y5D 51 Y5D H231 H11 H 0 0 N N N 2.067 -17.665 6.458 5.823 0.009 -1.294 H231 Y5D 52 Y5D H251 H12 H 0 0 N N N 3.247 -14.053 5.720 7.948 1.578 1.366 H251 Y5D 53 Y5D H272 H13 H 0 0 N N N 1.281 -13.059 8.111 9.737 2.461 -1.796 H272 Y5D 54 Y5D H271 H14 H 0 0 N N N -0.019 -14.028 7.337 9.891 2.391 -0.024 H271 Y5D 55 Y5D H291 H15 H 0 0 N N N 0.551 -11.341 7.101 8.365 -0.233 -2.123 H291 Y5D 56 Y5D H293 H16 H 0 0 N N N 0.461 -11.196 5.313 9.697 0.457 -3.081 H293 Y5D 57 Y5D H292 H17 H 0 0 N N N -0.708 -12.240 6.190 9.896 -1.125 -2.289 H292 Y5D 58 Y5D H302 H18 H 0 0 N N N 1.056 -12.892 3.979 10.079 0.255 1.080 H302 Y5D 59 Y5D H301 H19 H 0 0 N N N -0.250 -13.805 4.808 10.062 -1.243 0.120 H301 Y5D 60 Y5D H312 H20 H 0 0 N N N 0.968 -15.700 4.740 7.893 -0.887 1.280 H312 Y5D 61 Y5D H311 H21 H 0 0 N N N 2.194 -14.825 3.761 7.698 -0.835 -0.489 H311 Y5D 62 Y5D H341 H22 H 0 0 N N N 6.846 -16.667 5.552 3.518 1.870 2.648 H341 Y5D 63 Y5D H361 H23 H 0 0 N N N 8.569 -15.629 5.145 -2.800 -2.336 -2.062 H361 Y5D 64 Y5D H382 H24 H 0 0 N N N 12.931 -12.206 5.033 -6.777 -0.949 -0.601 H382 Y5D 65 Y5D H381 H25 H 0 0 N N N 12.027 -13.151 3.801 -7.734 -0.511 0.880 H381 Y5D 66 Y5D H392 H26 H 0 0 N N N 16.602 -12.164 2.842 -7.976 3.463 0.621 H392 Y5D 67 Y5D H391 H27 H 0 0 N N N 15.940 -11.710 1.234 -8.972 2.331 -0.325 H391 Y5D 68 Y5D H402 H28 H 0 0 N N N 15.576 -9.889 2.903 -7.685 4.886 -1.389 H402 Y5D 69 Y5D H403 H29 H 0 0 N N N 14.015 -10.581 2.346 -8.682 3.754 -2.335 H403 Y5D 70 Y5D H401 H30 H 0 0 N N N 14.676 -11.035 3.953 -9.409 4.677 -0.998 H401 Y5D 71 Y5D H161 H31 H 0 0 N N N 10.214 -22.526 6.533 2.690 -3.767 -1.399 H161 Y5D 72 Y5D H201 H32 H 0 0 N N N 5.933 -20.145 6.522 1.401 1.494 1.304 H201 Y5D 73 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y5D O41 S02 DOUB N N 1 Y5D O01 S02 DOUB N N 2 Y5D C39 S02 SING N N 3 Y5D C39 C40 SING N N 4 Y5D S02 N03 SING N N 5 Y5D N03 C38 SING N N 6 Y5D N03 C04 SING N N 7 Y5D C38 C05 SING N N 8 Y5D C04 C05 SING N N 9 Y5D C31 C30 SING N N 10 Y5D C31 C25 SING N N 11 Y5D C30 N28 SING N N 12 Y5D N37 C36 DOUB Y N 13 Y5D N37 N09 SING Y N 14 Y5D C36 C11 SING Y N 15 Y5D N09 C05 SING N N 16 Y5D N09 C10 SING Y N 17 Y5D F33 C32 SING N N 18 Y5D C05 C06 SING N N 19 Y5D C11 C10 DOUB Y N 20 Y5D C11 C12 SING N N 21 Y5D C12 N35 DOUB Y N 22 Y5D C12 C13 SING Y N 23 Y5D C32 C34 DOUB Y N 24 Y5D C32 C24 SING Y N 25 Y5D C14 C13 SING Y N 26 Y5D C14 C15 DOUB Y N 27 Y5D C34 C21 SING Y N 28 Y5D C25 C24 SING N N 29 Y5D C25 C26 SING N N 30 Y5D N35 C19 SING Y N 31 Y5D C13 C17 DOUB Y N 32 Y5D C24 C23 DOUB Y N 33 Y5D C15 N16 SING Y N 34 Y5D N28 C29 SING N N 35 Y5D N28 C27 SING N N 36 Y5D C21 N20 SING N N 37 Y5D C21 C22 DOUB Y N 38 Y5D C19 N20 SING N N 39 Y5D C19 N18 DOUB Y N 40 Y5D C17 N16 SING Y N 41 Y5D C17 N18 SING Y N 42 Y5D C23 C22 SING Y N 43 Y5D C06 C07 SING N N 44 Y5D C26 C27 SING N N 45 Y5D C07 N08 TRIP N N 46 Y5D C10 H101 SING N N 47 Y5D C15 H151 SING N N 48 Y5D C22 H221 SING N N 49 Y5D C26 H261 SING N N 50 Y5D C26 H262 SING N N 51 Y5D C04 H042 SING N N 52 Y5D C04 H041 SING N N 53 Y5D C06 H061 SING N N 54 Y5D C06 H062 SING N N 55 Y5D C14 H141 SING N N 56 Y5D C23 H231 SING N N 57 Y5D C25 H251 SING N N 58 Y5D C27 H272 SING N N 59 Y5D C27 H271 SING N N 60 Y5D C29 H291 SING N N 61 Y5D C29 H293 SING N N 62 Y5D C29 H292 SING N N 63 Y5D C30 H302 SING N N 64 Y5D C30 H301 SING N N 65 Y5D C31 H312 SING N N 66 Y5D C31 H311 SING N N 67 Y5D C34 H341 SING N N 68 Y5D C36 H361 SING N N 69 Y5D C38 H382 SING N N 70 Y5D C38 H381 SING N N 71 Y5D C39 H392 SING N N 72 Y5D C39 H391 SING N N 73 Y5D C40 H402 SING N N 74 Y5D C40 H403 SING N N 75 Y5D C40 H401 SING N N 76 Y5D N16 H161 SING N N 77 Y5D N20 H201 SING N N 78 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y5D SMILES ACDLabs 12.01 "c5c(c4c1c(ncc1)nc(Nc3ccc(C2CCN(C)CC2)c(c3)F)n4)cnn5C6(CN(C6)S(CC)(=O)=O)CC#N" Y5D InChI InChI 1.03 "InChI=1S/C28H32FN9O2S/c1-3-41(39,40)37-17-28(18-37,9-10-30)38-16-20(15-32-38)25-23-6-11-31-26(23)35-27(34-25)33-21-4-5-22(24(29)14-21)19-7-12-36(2)13-8-19/h4-6,11,14-16,19H,3,7-9,12-13,17-18H2,1-2H3,(H2,31,33,34,35)" Y5D InChIKey InChI 1.03 KODVAIZRONHLFN-UHFFFAOYSA-N Y5D SMILES_CANONICAL CACTVS 3.385 "CC[S](=O)(=O)N1CC(CC#N)(C1)n2cc(cn2)c3nc(Nc4ccc(C5CCN(C)CC5)c(F)c4)nc6[nH]ccc36" Y5D SMILES CACTVS 3.385 "CC[S](=O)(=O)N1CC(CC#N)(C1)n2cc(cn2)c3nc(Nc4ccc(C5CCN(C)CC5)c(F)c4)nc6[nH]ccc36" Y5D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCS(=O)(=O)N1CC(C1)(CC#N)n2cc(cn2)c3c4cc[nH]c4nc(n3)Nc5ccc(c(c5)F)C6CCN(CC6)C" Y5D SMILES "OpenEye OEToolkits" 2.0.7 "CCS(=O)(=O)N1CC(C1)(CC#N)n2cc(cn2)c3c4cc[nH]c4nc(n3)Nc5ccc(c(c5)F)C6CCN(CC6)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y5D "SYSTEMATIC NAME" ACDLabs 12.01 "{1-(ethylsulfonyl)-3-[4-(2-{[3-fluoro-4-(1-methylpiperidin-4-yl)phenyl]amino}-7H-pyrrolo[2,3-d]pyrimidin-4-yl)-1H-pyrazol-1-yl]azetidin-3-yl}acetonitrile" Y5D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[1-ethylsulfonyl-3-[4-[2-[[3-fluoranyl-4-(1-methylpiperidin-4-yl)phenyl]amino]-7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl]pyrazol-1-yl]azetidin-3-yl]ethanenitrile" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y5D "Create component" 2021-02-04 RCSB Y5D "Initial release" 2022-01-12 RCSB ##