data_Y5F # _chem_comp.id Y5F _chem_comp.name "2-chloro-N-(5-cyanopyridin-3-yl)-5-nitrobenzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H7 Cl N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-05 _chem_comp.pdbx_modified_date 2024-04-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 302.673 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y5F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FKC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y5F C02 C1 C 0 1 N N N N N N -4.261 5.727 7.541 -5.306 0.630 0.670 C02 Y5F 1 Y5F C03 C2 C 0 1 Y N N N N N -5.360 5.473 8.417 -4.360 -0.342 0.211 C03 Y5F 2 Y5F C04 C3 C 0 1 Y N N N N N -6.633 5.966 8.125 -4.794 -1.519 -0.402 C04 Y5F 3 Y5F C06 C4 C 0 1 Y N N N N N -7.490 5.044 10.022 -2.626 -2.246 -0.693 C06 Y5F 4 Y5F C07 C5 C 0 1 Y N N N N N -6.258 4.521 10.401 -2.111 -1.100 -0.099 C07 Y5F 5 Y5F C09 C6 C 0 1 N N N N N N -7.050 3.283 12.350 -0.186 0.298 -0.083 C09 Y5F 6 Y5F C11 C7 C 0 1 Y N N N N N -6.608 2.560 13.586 1.282 0.464 -0.049 C11 Y5F 7 Y5F C12 C8 C 0 1 Y N N N N N -5.597 1.634 13.475 2.110 -0.650 0.095 C12 Y5F 8 Y5F C13 C9 C 0 1 Y N N N N N -5.148 0.981 14.600 3.480 -0.488 0.125 C13 Y5F 9 Y5F C17 C10 C 0 1 Y N N N N N -5.645 1.257 15.849 4.034 0.775 0.014 C17 Y5F 10 Y5F C18 C11 C 0 1 Y N N N N N -6.639 2.209 15.982 3.220 1.885 -0.128 C18 Y5F 11 Y5F C19 C12 C 0 1 Y N N N N N -7.101 2.874 14.851 1.847 1.737 -0.166 C19 Y5F 12 Y5F C21 C13 C 0 1 Y N N N N N -5.177 4.732 9.581 -2.986 -0.125 0.364 C21 Y5F 13 Y5F N01 N1 N 0 1 N N N N N N -3.382 5.953 6.857 -6.056 1.401 1.034 N01 Y5F 14 Y5F N05 N2 N 0 1 Y N N N N N -7.684 5.764 8.914 -3.927 -2.416 -0.826 N05 Y5F 15 Y5F N08 N3 N 0 1 N N N N N N -6.055 3.750 11.565 -0.728 -0.930 0.031 N08 Y5F 16 Y5F N14 N4 N 1 1 N N N N N N -4.111 -0.037 14.463 4.360 -1.668 0.277 N14 Y5F 17 Y5F O10 O1 O 0 1 N N N N N N -8.238 3.362 12.046 -0.905 1.270 -0.213 O10 Y5F 18 Y5F O15 O2 O 0 1 N N N N N N -3.723 -0.592 15.486 3.874 -2.781 0.375 O15 Y5F 19 Y5F O16 O3 O -1 1 N N N N N N -3.693 -0.308 13.351 5.569 -1.527 0.304 O16 Y5F 20 Y5F H1 H1 H 0 1 N N N N N N -6.770 6.537 7.218 -5.851 -1.697 -0.529 H1 Y5F 21 Y5F H2 H2 H 0 1 N N N N N N -8.340 4.857 10.662 -1.951 -3.008 -1.054 H2 Y5F 22 Y5F H3 H3 H 0 1 N N N N N N -5.158 1.421 12.511 1.680 -1.637 0.182 H3 Y5F 23 Y5F H4 H4 H 0 1 N N N N N N -5.265 0.738 16.716 5.107 0.896 0.039 H4 Y5F 24 Y5F H5 H5 H 0 1 N N N N N N -7.052 2.434 16.954 3.659 2.868 -0.214 H5 Y5F 25 Y5F H7 H7 H 0 1 N N N N N N -4.206 4.332 9.834 -2.615 0.777 0.829 H7 Y5F 26 Y5F H8 H8 H 0 1 N N N N N N -5.114 3.535 11.826 -0.159 -1.697 0.203 H8 Y5F 27 Y5F CL1 CL1 CL 0 0 N Y N N N N -8.361 4.115 14.878 0.827 3.129 -0.352 CL1 Y5F 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y5F N01 C02 TRIP N N 1 Y5F C02 C03 SING N N 2 Y5F C04 C03 DOUB Y N 3 Y5F C04 N05 SING Y N 4 Y5F C03 C21 SING Y N 5 Y5F N05 C06 DOUB Y N 6 Y5F C21 C07 DOUB Y N 7 Y5F C06 C07 SING Y N 8 Y5F C07 N08 SING N N 9 Y5F N08 C09 SING N N 10 Y5F O10 C09 DOUB N N 11 Y5F C09 C11 SING N N 12 Y5F O16 N14 SING N N 13 Y5F C12 C11 DOUB Y N 14 Y5F C12 C13 SING Y N 15 Y5F C11 C19 SING Y N 16 Y5F N14 C13 SING N N 17 Y5F N14 O15 DOUB N N 18 Y5F C13 C17 DOUB Y N 19 Y5F C19 C18 DOUB Y N 20 Y5F C17 C18 SING Y N 21 Y5F C04 H1 SING N N 22 Y5F C06 H2 SING N N 23 Y5F C12 H3 SING N N 24 Y5F C17 H4 SING N N 25 Y5F C18 H5 SING N N 26 Y5F C21 H7 SING N N 27 Y5F N08 H8 SING N N 28 Y5F C19 CL1 SING N N 29 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y5F SMILES ACDLabs 12.01 "O=C(Nc1cc(cnc1)C#N)c1cc(ccc1Cl)[N+]([O-])=O" Y5F InChI InChI 1.06 "InChI=1S/C13H7ClN4O3/c14-12-2-1-10(18(20)21)4-11(12)13(19)17-9-3-8(5-15)6-16-7-9/h1-4,6-7H,(H,17,19)" Y5F InChIKey InChI 1.06 QDJGFGPMRNZDNJ-UHFFFAOYSA-N Y5F SMILES_CANONICAL CACTVS 3.385 "[O-][N+](=O)c1ccc(Cl)c(c1)C(=O)Nc2cncc(c2)C#N" Y5F SMILES CACTVS 3.385 "[O-][N+](=O)c1ccc(Cl)c(c1)C(=O)Nc2cncc(c2)C#N" Y5F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1[N+](=O)[O-])C(=O)Nc2cc(cnc2)C#N)Cl" Y5F SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1[N+](=O)[O-])C(=O)Nc2cc(cnc2)C#N)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y5F "SYSTEMATIC NAME" ACDLabs 12.01 "2-chloro-N-(5-cyanopyridin-3-yl)-5-nitrobenzamide" Y5F "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-chloranyl-~{N}-(5-cyanopyridin-3-yl)-5-nitro-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y5F "Create component" 2023-01-05 RCSB Y5F "Initial release" 2024-04-17 RCSB #