data_Y5H # _chem_comp.id Y5H _chem_comp.name "3-[(3AS,4R,5S,8AS,8BR)-4-[2-(5-CHLOROTHIOPHEN-2-YL)-1,3-OXAZOL-4-YL]-1,3-DIOXO-4,6,7,8,8A,8B-HEXAHYDRO-3AH-PYRROLO[3,4-A]PYRROLIZIN-2-YL]PROPYL-TRIMETHYL-AZANIUM" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H28 Cl N4 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2011-01-13 _chem_comp.pdbx_modified_date 2011-12-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 464.001 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y5H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2Y5H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y5H CL1 CL1 CL 0 0 N N N -0.603 6.004 27.714 -5.744 1.880 -1.360 CL1 Y5H 1 Y5H C25 C25 C 0 1 Y N N -1.413 7.520 27.383 -4.290 2.283 -0.502 C25 Y5H 2 Y5H C24 C24 C 0 1 Y N N -2.444 8.089 28.085 -4.215 3.146 0.519 C24 Y5H 3 Y5H C22 C22 C 0 1 Y N N -2.859 9.298 27.480 -2.956 3.313 1.053 C22 Y5H 4 Y5H S1 S1 S 0 1 Y N N -0.857 8.483 26.044 -2.700 1.613 -0.839 S1 Y5H 5 Y5H C20 C20 C 0 1 Y N N -2.092 9.655 26.377 -1.986 2.569 0.453 C20 Y5H 6 Y5H C17 C17 C 0 1 Y N N -2.326 10.758 25.457 -0.566 2.562 0.830 C17 Y5H 7 Y5H N16 N16 N 0 1 Y N N -1.737 10.983 24.300 0.361 1.780 0.320 N16 Y5H 8 Y5H O10 O10 O 0 1 Y N N -3.417 11.532 25.686 0.007 3.358 1.751 O10 Y5H 9 Y5H C9 C9 C 0 1 Y N N -3.424 12.380 24.590 1.319 3.045 1.804 C9 Y5H 10 Y5H C4 C4 C 0 1 Y N N -2.421 12.054 23.771 1.533 2.062 0.911 C4 Y5H 11 Y5H C1 C1 C 0 1 N N R -2.078 12.696 22.451 2.853 1.395 0.626 C1 Y5H 12 Y5H N3 N3 N 0 1 N N N -3.075 13.706 22.008 3.149 1.442 -0.826 N3 Y5H 13 Y5H C7 C7 C 0 1 N N S -2.785 13.859 20.572 4.102 0.315 -1.051 C7 Y5H 14 Y5H C14 C14 C 0 1 N N N -1.569 14.800 20.506 5.460 0.837 -0.544 C14 Y5H 15 Y5H C15 C15 C 0 1 N N N -1.736 15.683 21.754 5.349 2.374 -0.583 C15 Y5H 16 Y5H C8 C8 C 0 1 N N N -2.855 15.049 22.602 3.936 2.661 -1.131 C8 Y5H 17 Y5H C5 C5 C 0 1 N N R -2.524 12.458 20.029 3.616 -0.813 -0.122 C5 Y5H 18 Y5H C2 C2 C 0 1 N N S -2.130 11.645 21.291 2.783 -0.103 0.977 C2 Y5H 19 Y5H C6 C6 C 0 1 N N N -3.234 10.600 21.373 1.379 -0.610 0.736 C6 Y5H 20 Y5H O13 O13 O 0 1 N N N -3.355 9.693 22.179 0.400 -0.295 1.376 O13 Y5H 21 Y5H C11 C11 C 0 1 N N N -3.795 11.835 19.511 2.590 -1.652 -0.850 C11 Y5H 22 Y5H O18 O18 O 0 1 N N N -4.458 12.126 18.515 2.822 -2.382 -1.790 O18 Y5H 23 Y5H N12 N12 N 0 1 N N N -4.198 10.794 20.370 1.387 -1.462 -0.296 N12 Y5H 24 Y5H C19 C19 C 0 1 N N N -5.387 9.943 20.203 0.178 -2.133 -0.779 C19 Y5H 25 Y5H C21 C21 C 0 1 N N N -5.123 8.851 19.157 -0.062 -3.404 0.038 C21 Y5H 26 Y5H C23 C23 C 0 1 N N N -6.375 7.954 19.209 -1.388 -4.040 -0.383 C23 Y5H 27 Y5H N29 N29 N 1 1 N N N -6.366 6.830 18.192 -1.674 -5.193 0.480 N29 Y5H 28 Y5H C32 C32 C 0 1 N N N -6.317 7.398 16.802 -2.881 -5.878 -0.002 C32 Y5H 29 Y5H C31 C31 C 0 1 N N N -7.696 6.127 18.335 -0.538 -6.123 0.447 C31 Y5H 30 Y5H C30 C30 C 0 1 N N N -5.235 5.877 18.381 -1.891 -4.733 1.858 C30 Y5H 31 Y5H H24 H24 H 0 1 N N N -2.881 7.670 28.980 -5.079 3.673 0.897 H24 Y5H 32 Y5H H22 H22 H 0 1 N N N -3.690 9.886 27.840 -2.755 3.979 1.879 H22 Y5H 33 Y5H H9 H9 H 0 1 N N N -4.131 13.180 24.424 2.060 3.501 2.443 H9 Y5H 34 Y5H H1 H1 H 0 1 N N N -1.087 13.140 22.624 3.651 1.879 1.190 H1 Y5H 35 Y5H H7 H7 H 0 1 N N N -3.592 14.293 19.964 4.144 0.014 -2.098 H7 Y5H 36 Y5H H82 H82 H 0 1 N N N -3.773 15.654 22.558 3.973 2.828 -2.207 H82 Y5H 37 Y5H H81 H81 H 0 1 N N N -2.580 14.988 23.665 3.503 3.526 -0.628 H81 Y5H 38 Y5H H5 H5 H 0 1 N N N -1.779 12.476 19.220 4.437 -1.408 0.278 H5 Y5H 39 Y5H H2 H2 H 0 1 N N N -1.161 11.124 21.310 3.146 -0.314 1.983 H2 Y5H 40 Y5H H141 H141 H 0 0 N N N -0.622 14.240 20.530 5.638 0.497 0.476 H141 Y5H 41 Y5H H142 H142 H 0 0 N N N -1.528 15.381 19.573 6.263 0.500 -1.200 H142 Y5H 42 Y5H H151 H151 H 0 0 N N N -2.010 16.708 21.464 5.457 2.787 0.420 H151 Y5H 43 Y5H H152 H152 H 0 0 N N N -0.796 15.741 22.323 6.106 2.791 -1.247 H152 Y5H 44 Y5H H191 H191 H 0 0 N N N -5.630 9.469 21.166 -0.677 -1.465 -0.671 H191 Y5H 45 Y5H H192 H192 H 0 0 N N N -6.227 10.567 19.863 0.303 -2.395 -1.830 H192 Y5H 46 Y5H H211 H211 H 0 0 N N N -4.987 9.285 18.156 0.751 -4.109 -0.139 H211 Y5H 47 Y5H H212 H212 H 0 0 N N N -4.201 8.290 19.366 -0.100 -3.152 1.098 H212 Y5H 48 Y5H H231 H231 H 0 0 N N N -6.431 7.506 20.212 -2.189 -3.306 -0.287 H231 Y5H 49 Y5H H232 H232 H 0 0 N N N -7.239 8.593 18.976 -1.320 -4.369 -1.420 H232 Y5H 50 Y5H H321 H321 H 0 0 N N N -6.305 8.497 16.855 -2.721 -6.220 -1.025 H321 Y5H 51 Y5H H322 H322 H 0 0 N N N -5.407 7.045 16.294 -3.093 -6.734 0.638 H322 Y5H 52 Y5H H323 H323 H 0 0 N N N -7.203 7.068 16.240 -3.725 -5.188 0.022 H323 Y5H 53 Y5H H311 H311 H 0 0 N N N -7.908 5.956 19.401 0.330 -5.652 0.909 H311 Y5H 54 Y5H H312 H312 H 0 0 N N N -8.489 6.752 17.899 -0.794 -7.030 0.996 H312 Y5H 55 Y5H H313 H313 H 0 0 N N N -7.658 5.161 17.810 -0.306 -6.378 -0.587 H313 Y5H 56 Y5H H301 H301 H 0 0 N N N -4.786 5.642 17.405 -2.734 -4.043 1.882 H301 Y5H 57 Y5H H302 H302 H 0 0 N N N -4.476 6.334 19.034 -2.103 -5.589 2.498 H302 Y5H 58 Y5H H303 H303 H 0 0 N N N -5.609 4.952 18.844 -0.995 -4.224 2.216 H303 Y5H 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y5H C1 C2 SING N N 1 Y5H C1 N3 SING N N 2 Y5H C1 C4 SING N N 3 Y5H S1 C20 SING Y N 4 Y5H S1 C25 SING Y N 5 Y5H CL1 C25 SING N N 6 Y5H C2 C5 SING N N 7 Y5H C2 C6 SING N N 8 Y5H N3 C7 SING N N 9 Y5H N3 C8 SING N N 10 Y5H C4 C9 DOUB Y N 11 Y5H C4 N16 SING Y N 12 Y5H C5 C7 SING N N 13 Y5H C5 C11 SING N N 14 Y5H C6 N12 SING N N 15 Y5H C6 O13 DOUB N N 16 Y5H C7 C14 SING N N 17 Y5H C8 C15 SING N N 18 Y5H C9 O10 SING Y N 19 Y5H O10 C17 SING Y N 20 Y5H C11 N12 SING N N 21 Y5H C11 O18 DOUB N N 22 Y5H N12 C19 SING N N 23 Y5H C14 C15 SING N N 24 Y5H N16 C17 DOUB Y N 25 Y5H C17 C20 SING Y N 26 Y5H C19 C21 SING N N 27 Y5H C20 C22 DOUB Y N 28 Y5H C21 C23 SING N N 29 Y5H C22 C24 SING Y N 30 Y5H C23 N29 SING N N 31 Y5H C24 C25 DOUB Y N 32 Y5H N29 C30 SING N N 33 Y5H N29 C31 SING N N 34 Y5H N29 C32 SING N N 35 Y5H C24 H24 SING N N 36 Y5H C22 H22 SING N N 37 Y5H C9 H9 SING N N 38 Y5H C1 H1 SING N N 39 Y5H C7 H7 SING N N 40 Y5H C8 H82 SING N N 41 Y5H C8 H81 SING N N 42 Y5H C5 H5 SING N N 43 Y5H C2 H2 SING N N 44 Y5H C14 H141 SING N N 45 Y5H C14 H142 SING N N 46 Y5H C15 H151 SING N N 47 Y5H C15 H152 SING N N 48 Y5H C19 H191 SING N N 49 Y5H C19 H192 SING N N 50 Y5H C21 H211 SING N N 51 Y5H C21 H212 SING N N 52 Y5H C23 H231 SING N N 53 Y5H C23 H232 SING N N 54 Y5H C32 H321 SING N N 55 Y5H C32 H322 SING N N 56 Y5H C32 H323 SING N N 57 Y5H C31 H311 SING N N 58 Y5H C31 H312 SING N N 59 Y5H C31 H313 SING N N 60 Y5H C30 H301 SING N N 61 Y5H C30 H302 SING N N 62 Y5H C30 H303 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y5H SMILES_CANONICAL CACTVS 3.352 "C[N+](C)(C)CCCN1C(=O)[C@H]2[C@@H]3CCCN3[C@H]([C@H]2C1=O)c4coc(n4)c5sc(Cl)cc5" Y5H SMILES CACTVS 3.352 "C[N+](C)(C)CCCN1C(=O)[CH]2[CH]3CCCN3[CH]([CH]2C1=O)c4coc(n4)c5sc(Cl)cc5" Y5H SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "C[N+](C)(C)CCCN1C(=O)[C@H]2[C@@H]3CCC[N@@]3[C@H]([C@H]2C1=O)c4coc(n4)c5ccc(s5)Cl" Y5H SMILES "OpenEye OEToolkits" 1.6.1 "C[N+](C)(C)CCCN1C(=O)C2C3CCCN3C(C2C1=O)c4coc(n4)c5ccc(s5)Cl" Y5H InChI InChI 1.03 "InChI=1S/C22H28ClN4O3S/c1-27(2,3)11-5-10-26-21(28)17-14-6-4-9-25(14)19(18(17)22(26)29)13-12-30-20(24-13)15-7-8-16(23)31-15/h7-8,12,14,17-19H,4-6,9-11H2,1-3H3/q+1/t14-,17-,18-,19-/m0/s1" Y5H InChIKey InChI 1.03 JCNHSXPHCSYYCR-QZHFEQFPSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y5H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "3-[(3aS,4R,5S,8aS,8bR)-4-[2-(5-chlorothiophen-2-yl)-1,3-oxazol-4-yl]-1,3-dioxo-4,6,7,8,8a,8b-hexahydro-3aH-pyrrolo[3,4-a]pyrrolizin-2-yl]propyl-trimethyl-azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y5H "Create component" 2011-01-13 EBI Y5H "Modify aromatic_flag" 2011-06-04 RCSB Y5H "Modify descriptor" 2011-06-04 RCSB #