data_Y5L # _chem_comp.id Y5L _chem_comp.name "4-(2-chloro-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl)-7-methoxy-3,4-dihydroquinoxalin-2(1H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H15 Cl N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-05-20 _chem_comp.pdbx_modified_date 2021-09-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 330.769 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y5L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6X1E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y5L C02 C1 C 0 1 Y N N 16.280 -66.927 -38.882 1.980 -2.039 0.336 C02 Y5L 1 Y5L C04 C2 C 0 1 Y N N 14.464 -66.864 -40.303 3.487 -0.352 -0.095 C04 Y5L 2 Y5L C05 C3 C 0 1 Y N N 15.291 -66.703 -41.410 2.441 0.537 -0.232 C05 Y5L 3 Y5L C06 C4 C 0 1 N N N 14.415 -66.613 -42.681 2.973 1.915 -0.548 C06 Y5L 4 Y5L C07 C5 C 0 1 N N N 12.989 -66.398 -42.218 4.429 1.688 -1.011 C07 Y5L 5 Y5L C08 C6 C 0 1 N N N 12.994 -66.888 -40.782 4.800 0.367 -0.311 C08 Y5L 6 Y5L C09 C7 C 0 1 Y N N 16.680 -66.653 -41.154 1.138 0.063 -0.073 C09 Y5L 7 Y5L C11 C8 C 0 1 Y N N 17.478 -65.658 -43.366 -1.261 0.431 -0.197 C11 Y5L 8 Y5L C12 C9 C 0 1 Y N N 16.783 -64.417 -43.311 -1.551 -0.841 -0.658 C12 Y5L 9 Y5L C13 C10 C 0 1 Y N N 16.639 -63.650 -44.468 -2.858 -1.294 -0.647 C13 Y5L 10 Y5L C14 C11 C 0 1 Y N N 17.183 -64.101 -45.683 -3.875 -0.476 -0.176 C14 Y5L 11 Y5L C16 C12 C 0 1 N N N 16.710 -62.022 -46.635 -5.385 -2.249 -0.662 C16 Y5L 12 Y5L C17 C13 C 0 1 Y N N 17.861 -65.314 -45.724 -3.588 0.799 0.288 C17 Y5L 13 Y5L C18 C14 C 0 1 Y N N 18.008 -66.096 -44.557 -2.281 1.257 0.280 C18 Y5L 14 Y5L C20 C15 C 0 1 N N N 19.210 -68.019 -43.413 -0.769 3.091 0.496 C20 Y5L 15 Y5L C21 C16 C 0 1 N N N 18.871 -67.238 -42.115 0.250 2.370 -0.348 C21 Y5L 16 Y5L N03 N1 N 0 1 Y N N 14.971 -66.972 -39.062 3.222 -1.621 0.187 N03 Y5L 17 Y5L N10 N2 N 0 1 N N N 17.661 -66.507 -42.203 0.056 0.920 -0.202 N10 Y5L 18 Y5L N19 N3 N 0 1 N N N 18.738 -67.388 -44.628 -1.968 2.536 0.753 N19 Y5L 19 Y5L N23 N4 N 0 1 Y N N 17.116 -66.774 -39.903 0.951 -1.224 0.208 N23 Y5L 20 Y5L O15 O1 O 0 1 N N N 17.058 -63.353 -46.862 -5.159 -0.926 -0.170 O15 Y5L 21 Y5L O22 O2 O 0 1 N N N 19.797 -69.045 -43.407 -0.504 4.183 0.952 O22 Y5L 22 Y5L CL01 CL1 CL 0 0 N N N 16.950 -67.072 -37.240 1.691 -3.711 0.704 CL01 Y5L 23 Y5L H1 H1 H 0 1 N N N 14.489 -67.547 -43.258 2.390 2.377 -1.345 H1 Y5L 24 Y5L H2 H2 H 0 1 N N N 14.741 -65.769 -43.306 2.953 2.537 0.347 H2 Y5L 25 Y5L H3 H3 H 0 1 N N N 12.718 -65.333 -42.267 4.478 1.572 -2.094 H3 Y5L 26 Y5L H4 H4 H 0 1 N N N 12.287 -66.984 -42.829 5.072 2.502 -0.678 H4 Y5L 27 Y5L H5 H5 H 0 1 N N N 12.381 -66.225 -40.154 5.276 0.568 0.649 H5 Y5L 28 Y5L H6 H6 H 0 1 N N N 12.596 -67.912 -40.731 5.461 -0.225 -0.945 H6 Y5L 29 Y5L H7 H7 H 0 1 N N N 16.368 -64.070 -42.376 -0.760 -1.477 -1.026 H7 Y5L 30 Y5L H8 H8 H 0 1 N N N 16.109 -62.710 -44.430 -3.088 -2.287 -1.005 H8 Y5L 31 Y5L H9 H9 H 0 1 N N N 16.629 -61.494 -47.597 -5.057 -2.311 -1.700 H9 Y5L 32 Y5L H10 H10 H 0 1 N N N 15.744 -61.980 -46.111 -4.821 -2.962 -0.060 H10 Y5L 33 Y5L H11 H11 H 0 1 N N N 17.483 -61.541 -46.017 -6.448 -2.482 -0.602 H11 Y5L 34 Y5L H12 H12 H 0 1 N N N 18.279 -65.662 -46.657 -4.382 1.434 0.654 H12 Y5L 35 Y5L H13 H13 H 0 1 N N N 18.786 -67.957 -41.287 0.123 2.651 -1.393 H13 Y5L 36 Y5L H14 H14 H 0 1 N N N 19.690 -66.534 -41.907 1.253 2.639 -0.017 H14 Y5L 37 Y5L H15 H15 H 0 1 N N N 18.903 -67.821 -45.514 -2.623 3.028 1.273 H15 Y5L 38 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y5L O15 C16 SING N N 1 Y5L O15 C14 SING N N 2 Y5L C17 C14 DOUB Y N 3 Y5L C17 C18 SING Y N 4 Y5L C14 C13 SING Y N 5 Y5L N19 C18 SING N N 6 Y5L N19 C20 SING N N 7 Y5L C18 C11 DOUB Y N 8 Y5L C13 C12 DOUB Y N 9 Y5L C20 O22 DOUB N N 10 Y5L C20 C21 SING N N 11 Y5L C11 C12 SING Y N 12 Y5L C11 N10 SING N N 13 Y5L C06 C07 SING N N 14 Y5L C06 C05 SING N N 15 Y5L C07 C08 SING N N 16 Y5L N10 C21 SING N N 17 Y5L N10 C09 SING N N 18 Y5L C05 C09 DOUB Y N 19 Y5L C05 C04 SING Y N 20 Y5L C09 N23 SING Y N 21 Y5L C08 C04 SING N N 22 Y5L C04 N03 DOUB Y N 23 Y5L N23 C02 DOUB Y N 24 Y5L N03 C02 SING Y N 25 Y5L C02 CL01 SING N N 26 Y5L C06 H1 SING N N 27 Y5L C06 H2 SING N N 28 Y5L C07 H3 SING N N 29 Y5L C07 H4 SING N N 30 Y5L C08 H5 SING N N 31 Y5L C08 H6 SING N N 32 Y5L C12 H7 SING N N 33 Y5L C13 H8 SING N N 34 Y5L C16 H9 SING N N 35 Y5L C16 H10 SING N N 36 Y5L C16 H11 SING N N 37 Y5L C17 H12 SING N N 38 Y5L C21 H13 SING N N 39 Y5L C21 H14 SING N N 40 Y5L N19 H15 SING N N 41 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y5L SMILES ACDLabs 12.01 "c1(Cl)nc4c(c(n1)N3c2ccc(cc2NC(=O)C3)OC)CCC4" Y5L InChI InChI 1.03 "InChI=1S/C16H15ClN4O2/c1-23-9-5-6-13-12(7-9)18-14(22)8-21(13)15-10-3-2-4-11(10)19-16(17)20-15/h5-7H,2-4,8H2,1H3,(H,18,22)" Y5L InChIKey InChI 1.03 JFFNCFQJSOVJEN-UHFFFAOYSA-N Y5L SMILES_CANONICAL CACTVS 3.385 "COc1ccc2N(CC(=O)Nc2c1)c3nc(Cl)nc4CCCc34" Y5L SMILES CACTVS 3.385 "COc1ccc2N(CC(=O)Nc2c1)c3nc(Cl)nc4CCCc34" Y5L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc2c(c1)NC(=O)CN2c3c4c(nc(n3)Cl)CCC4" Y5L SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccc2c(c1)NC(=O)CN2c3c4c(nc(n3)Cl)CCC4" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y5L "SYSTEMATIC NAME" ACDLabs 12.01 "4-(2-chloro-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl)-7-methoxy-3,4-dihydroquinoxalin-2(1H)-one" Y5L "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-(2-chloranyl-6,7-dihydro-5~{H}-cyclopenta[d]pyrimidin-4-yl)-7-methoxy-1,3-dihydroquinoxalin-2-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y5L "Create component" 2020-05-20 RCSB Y5L "Initial release" 2021-09-22 RCSB ##