data_Y5M # _chem_comp.id Y5M _chem_comp.name "7-methoxy-4-(2-methyl-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl)-3,4-dihydroquinoxalin-2(1H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H18 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-05-20 _chem_comp.pdbx_modified_date 2021-09-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 310.350 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y5M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6X1F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y5M C01 C1 C 0 1 N N N 17.109 -67.164 -37.167 -1.504 3.835 0.947 C01 Y5M 1 Y5M C02 C2 C 0 1 Y N N 16.481 -67.089 -38.552 -1.882 2.432 0.546 C02 Y5M 2 Y5M C04 C3 C 0 1 Y N N 14.605 -67.075 -39.896 -3.532 0.910 0.037 C04 Y5M 3 Y5M C05 C4 C 0 1 Y N N 15.380 -66.955 -41.041 -2.568 -0.055 -0.167 C05 Y5M 4 Y5M C06 C5 C 0 1 N N N 14.448 -66.907 -42.281 -3.219 -1.361 -0.557 C06 Y5M 5 Y5M C07 C6 C 0 1 N N N 13.038 -67.197 -41.808 -4.654 -0.983 -0.986 C07 Y5M 6 Y5M C08 C7 C 0 1 N N N 13.119 -67.109 -40.301 -4.904 0.321 -0.204 C08 Y5M 7 Y5M C09 C8 C 0 1 Y N N 16.777 -66.898 -40.852 -1.227 0.295 0.002 C09 Y5M 8 Y5M C11 C9 C 0 1 Y N N 17.495 -65.957 -43.118 1.130 -0.268 -0.175 C11 Y5M 9 Y5M C12 C10 C 0 1 Y N N 16.804 -64.714 -43.061 1.525 1.000 -0.563 C12 Y5M 10 Y5M C13 C11 C 0 1 Y N N 16.639 -63.951 -44.219 2.866 1.339 -0.542 C13 Y5M 11 Y5M C14 C12 C 0 1 Y N N 17.161 -64.415 -45.436 3.813 0.410 -0.134 C14 Y5M 12 Y5M C16 C13 C 0 1 N N N 16.626 -62.359 -46.388 5.464 2.074 -0.533 C16 Y5M 13 Y5M C17 C14 C 0 1 Y N N 17.830 -65.630 -45.480 3.421 -0.861 0.257 C17 Y5M 14 Y5M C18 C15 C 0 1 Y N N 17.997 -66.402 -44.313 2.079 -1.205 0.238 C18 Y5M 15 Y5M C20 C16 C 0 1 N N N 19.218 -68.322 -43.204 0.417 -2.914 0.365 C20 Y5M 16 Y5M C21 C17 C 0 1 N N N 18.906 -67.539 -41.899 -0.543 -2.059 -0.421 C21 Y5M 17 Y5M N03 N1 N 0 1 Y N N 15.168 -67.139 -38.676 -3.155 2.133 0.389 N03 Y5M 18 Y5M N10 N2 N 0 1 N N N 17.701 -66.799 -41.959 -0.224 -0.642 -0.191 N10 Y5M 19 Y5M N19 N3 N 0 1 N N N 18.720 -67.691 -44.403 1.661 -2.479 0.639 N19 Y5M 20 Y5M N23 N4 N 0 1 Y N N 17.267 -66.978 -39.618 -0.929 1.542 0.357 N23 Y5M 21 Y5M O15 O1 O 0 1 N N N 17.017 -63.678 -46.612 5.130 0.748 -0.117 O15 Y5M 22 Y5M O22 O2 O 0 1 N N N 19.798 -69.350 -43.221 0.062 -4.005 0.759 O22 Y5M 23 Y5M H1 H1 H 0 1 N N N 18.204 -67.111 -37.257 -1.472 3.905 2.035 H1 Y5M 24 Y5M H2 H2 H 0 1 N N N 16.751 -66.322 -36.556 -0.523 4.078 0.538 H2 Y5M 25 Y5M H3 H3 H 0 1 N N N 16.826 -68.112 -36.687 -2.243 4.535 0.559 H3 Y5M 26 Y5M H4 H4 H 0 1 N N N 14.761 -67.665 -43.014 -2.686 -1.823 -1.387 H4 Y5M 27 Y5M H5 H5 H 0 1 N N N 14.491 -65.910 -42.743 -3.246 -2.035 0.299 H5 Y5M 28 Y5M H6 H6 H 0 1 N N N 12.334 -66.450 -42.204 -4.702 -0.798 -2.059 H6 Y5M 29 Y5M H7 H7 H 0 1 N N N 12.721 -68.202 -42.122 -5.363 -1.757 -0.693 H7 Y5M 30 Y5M H8 H8 H 0 1 N N N 12.618 -66.193 -39.955 -5.387 0.105 0.748 H8 Y5M 31 Y5M H9 H9 H 0 1 N N N 12.631 -67.986 -39.851 -5.516 1.004 -0.793 H9 Y5M 32 Y5M H10 H10 H 0 1 N N N 16.407 -64.360 -42.121 0.789 1.722 -0.882 H10 Y5M 33 Y5M H11 H11 H 0 1 N N N 16.112 -63.009 -44.178 3.177 2.328 -0.844 H11 Y5M 34 Y5M H12 H12 H 0 1 N N N 16.531 -61.836 -47.351 6.544 2.212 -0.472 H12 Y5M 35 Y5M H13 H13 H 0 1 N N N 15.657 -62.347 -45.867 5.136 2.227 -1.561 H13 Y5M 36 Y5M H14 H14 H 0 1 N N N 17.381 -61.853 -45.769 4.969 2.795 0.118 H14 Y5M 37 Y5M H15 H15 H 0 1 N N N 18.227 -65.988 -46.419 4.160 -1.582 0.573 H15 Y5M 38 Y5M H16 H16 H 0 1 N N N 18.832 -68.259 -41.070 -0.446 -2.282 -1.483 H16 Y5M 39 Y5M H17 H17 H 0 1 N N N 19.734 -66.841 -41.705 -1.564 -2.264 -0.097 H17 Y5M 40 Y5M H18 H18 H 0 1 N N N 18.863 -68.124 -45.293 2.275 -3.056 1.120 H18 Y5M 41 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y5M O15 C16 SING N N 1 Y5M O15 C14 SING N N 2 Y5M C17 C14 DOUB Y N 3 Y5M C17 C18 SING Y N 4 Y5M C14 C13 SING Y N 5 Y5M N19 C18 SING N N 6 Y5M N19 C20 SING N N 7 Y5M C18 C11 DOUB Y N 8 Y5M C13 C12 DOUB Y N 9 Y5M O22 C20 DOUB N N 10 Y5M C20 C21 SING N N 11 Y5M C11 C12 SING Y N 12 Y5M C11 N10 SING N N 13 Y5M C06 C07 SING N N 14 Y5M C06 C05 SING N N 15 Y5M N10 C21 SING N N 16 Y5M N10 C09 SING N N 17 Y5M C07 C08 SING N N 18 Y5M C05 C09 DOUB Y N 19 Y5M C05 C04 SING Y N 20 Y5M C09 N23 SING Y N 21 Y5M C08 C04 SING N N 22 Y5M C04 N03 DOUB Y N 23 Y5M N23 C02 DOUB Y N 24 Y5M N03 C02 SING Y N 25 Y5M C02 C01 SING N N 26 Y5M C01 H1 SING N N 27 Y5M C01 H2 SING N N 28 Y5M C01 H3 SING N N 29 Y5M C06 H4 SING N N 30 Y5M C06 H5 SING N N 31 Y5M C07 H6 SING N N 32 Y5M C07 H7 SING N N 33 Y5M C08 H8 SING N N 34 Y5M C08 H9 SING N N 35 Y5M C12 H10 SING N N 36 Y5M C13 H11 SING N N 37 Y5M C16 H12 SING N N 38 Y5M C16 H13 SING N N 39 Y5M C16 H14 SING N N 40 Y5M C17 H15 SING N N 41 Y5M C21 H16 SING N N 42 Y5M C21 H17 SING N N 43 Y5M N19 H18 SING N N 44 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y5M SMILES ACDLabs 12.01 "Cc1nc4c(c(n1)N3c2ccc(cc2NC(C3)=O)OC)CCC4" Y5M InChI InChI 1.03 "InChI=1S/C17H18N4O2/c1-10-18-13-5-3-4-12(13)17(19-10)21-9-16(22)20-14-8-11(23-2)6-7-15(14)21/h6-8H,3-5,9H2,1-2H3,(H,20,22)" Y5M InChIKey InChI 1.03 UEPKZTFWZFQXML-UHFFFAOYSA-N Y5M SMILES_CANONICAL CACTVS 3.385 "COc1ccc2N(CC(=O)Nc2c1)c3nc(C)nc4CCCc34" Y5M SMILES CACTVS 3.385 "COc1ccc2N(CC(=O)Nc2c1)c3nc(C)nc4CCCc34" Y5M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1nc2c(c(n1)N3CC(=O)Nc4c3ccc(c4)OC)CCC2" Y5M SMILES "OpenEye OEToolkits" 2.0.7 "Cc1nc2c(c(n1)N3CC(=O)Nc4c3ccc(c4)OC)CCC2" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y5M "SYSTEMATIC NAME" ACDLabs 12.01 "7-methoxy-4-(2-methyl-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl)-3,4-dihydroquinoxalin-2(1H)-one" Y5M "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "7-methoxy-4-(2-methyl-6,7-dihydro-5~{H}-cyclopenta[d]pyrimidin-4-yl)-1,3-dihydroquinoxalin-2-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y5M "Create component" 2020-05-20 RCSB Y5M "Initial release" 2021-09-22 RCSB ##