data_Y5O # _chem_comp.id Y5O _chem_comp.name "2-chloro-N-(6-cyanopyridin-3-yl)-5-nitrobenzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H7 Cl N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-05 _chem_comp.pdbx_modified_date 2024-04-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 302.673 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y5O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FKD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y5O C16 C1 C 0 1 Y N N N N N -5.754 1.190 16.174 4.231 -0.380 0.041 C16 Y5O 1 Y5O C12 C2 C 0 1 Y N N N N N -5.133 0.984 14.965 3.497 0.793 0.053 C12 Y5O 2 Y5O C11 C3 C 0 1 Y N N N N N -5.482 1.677 13.827 2.119 0.750 0.006 C11 Y5O 3 Y5O C10 C4 C 0 1 Y N N N N N -6.528 2.571 13.863 1.464 -0.481 -0.054 C10 Y5O 4 Y5O C17 C5 C 0 1 Y N N N N N -6.774 2.120 16.234 3.589 -1.604 -0.018 C17 Y5O 5 Y5O C18 C6 C 0 1 Y N N N N N -7.141 2.813 15.090 2.210 -1.663 -0.066 C18 Y5O 6 Y5O C02 C7 C 0 1 N N N N N N -5.924 6.152 6.820 -6.277 0.524 0.084 C02 Y5O 7 Y5O C03 C8 C 0 1 Y N N N N N -5.976 5.473 8.103 -4.845 0.526 0.052 C03 Y5O 8 Y5O C04 C9 C 0 1 Y N N N N N -7.156 5.453 8.829 -4.139 -0.480 0.713 C04 Y5O 9 Y5O C05 C10 C 0 1 Y N N N N N -7.140 4.804 10.045 -2.757 -0.468 0.674 C05 Y5O 10 Y5O C06 C11 C 0 1 Y N N N N N -5.974 4.203 10.497 -2.121 0.555 -0.027 C06 Y5O 11 Y5O C08 C12 C 0 1 N N N N N N -6.899 3.354 12.636 -0.012 -0.535 -0.103 C08 Y5O 12 Y5O C20 C13 C 0 1 Y N N N N N -4.841 4.290 9.691 -2.891 1.526 -0.661 C20 Y5O 13 Y5O N01 N1 N 0 1 N N N N N N -5.878 6.702 5.820 -7.413 0.523 0.110 N01 Y5O 14 Y5O N07 N2 N 0 1 N N N N N N -5.902 3.520 11.732 -0.728 0.607 -0.091 N07 Y5O 15 Y5O N13 N3 N 1 1 N N N N N N -4.053 -0.003 14.885 4.193 2.098 0.116 N13 Y5O 16 Y5O N21 N4 N 0 1 Y N N N N N -4.833 4.912 8.514 -4.204 1.483 -0.610 N21 Y5O 17 Y5O O09 O1 O 0 1 N N N N N N -8.048 3.745 12.464 -0.579 -1.608 -0.155 O09 Y5O 18 Y5O O14 O2 O -1 1 N N N N N N -3.529 -0.203 13.799 3.549 3.132 0.127 O14 Y5O 19 Y5O O15 O3 O 0 1 N N N N N N -3.725 -0.585 15.907 5.410 2.138 0.158 O15 Y5O 20 Y5O H1 H1 H 0 1 N N N N N N -5.453 0.640 17.053 5.310 -0.340 0.074 H1 Y5O 21 Y5O H2 H2 H 0 1 N N N N N N -4.936 1.519 12.909 1.549 1.667 0.016 H2 Y5O 22 Y5O H3 H3 H 0 1 N N N N N N -7.283 2.307 17.168 4.168 -2.516 -0.032 H3 Y5O 23 Y5O H5 H5 H 0 1 N N N N N N -8.052 5.927 8.457 -4.664 -1.258 1.247 H5 Y5O 24 Y5O H6 H6 H 0 1 N N N N N N -8.036 4.763 10.647 -2.184 -1.234 1.176 H6 Y5O 25 Y5O H7 H7 H 0 1 N N N N N N -3.927 3.831 10.037 -2.405 2.322 -1.206 H7 Y5O 26 Y5O H8 H8 H 0 1 N N N N N N -5.018 3.114 11.965 -0.276 1.464 -0.127 H8 Y5O 27 Y5O CL1 CL1 CL 0 0 N Y N N N N -8.367 4.061 15.331 1.406 -3.199 -0.139 CL1 Y5O 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y5O N01 C02 TRIP N N 1 Y5O C02 C03 SING N N 2 Y5O C03 N21 DOUB Y N 3 Y5O C03 C04 SING Y N 4 Y5O N21 C20 SING Y N 5 Y5O C04 C05 DOUB Y N 6 Y5O C20 C06 DOUB Y N 7 Y5O C05 C06 SING Y N 8 Y5O C06 N07 SING N N 9 Y5O N07 C08 SING N N 10 Y5O O09 C08 DOUB N N 11 Y5O C08 C10 SING N N 12 Y5O O14 N13 SING N N 13 Y5O C11 C10 DOUB Y N 14 Y5O C11 C12 SING Y N 15 Y5O C10 C18 SING Y N 16 Y5O N13 C12 SING N N 17 Y5O N13 O15 DOUB N N 18 Y5O C12 C16 DOUB Y N 19 Y5O C18 C17 DOUB Y N 20 Y5O C16 C17 SING Y N 21 Y5O C16 H1 SING N N 22 Y5O C11 H2 SING N N 23 Y5O C17 H3 SING N N 24 Y5O C04 H5 SING N N 25 Y5O C05 H6 SING N N 26 Y5O C20 H7 SING N N 27 Y5O N07 H8 SING N N 28 Y5O C18 CL1 SING N N 29 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y5O SMILES ACDLabs 12.01 "N#Cc1ccc(NC(=O)c2cc(ccc2Cl)[N+]([O-])=O)cn1" Y5O InChI InChI 1.06 "InChI=1S/C13H7ClN4O3/c14-12-4-3-10(18(20)21)5-11(12)13(19)17-9-2-1-8(6-15)16-7-9/h1-5,7H,(H,17,19)" Y5O InChIKey InChI 1.06 GGFOYRUYCGALNH-UHFFFAOYSA-N Y5O SMILES_CANONICAL CACTVS 3.385 "[O-][N+](=O)c1ccc(Cl)c(c1)C(=O)Nc2ccc(nc2)C#N" Y5O SMILES CACTVS 3.385 "[O-][N+](=O)c1ccc(Cl)c(c1)C(=O)Nc2ccc(nc2)C#N" Y5O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1[N+](=O)[O-])C(=O)Nc2ccc(nc2)C#N)Cl" Y5O SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1[N+](=O)[O-])C(=O)Nc2ccc(nc2)C#N)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y5O "SYSTEMATIC NAME" ACDLabs 12.01 "2-chloro-N-(6-cyanopyridin-3-yl)-5-nitrobenzamide" Y5O "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-chloranyl-~{N}-(6-cyanopyridin-3-yl)-5-nitro-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y5O "Create component" 2023-01-05 RCSB Y5O "Initial release" 2024-04-17 RCSB #