data_Y5V # _chem_comp.id Y5V _chem_comp.name "5-hydroxy-N-[2-(4-hydroxy-3-methoxyphenyl)ethyl]-2-(2-methylphenyl)-6-oxo-1,6-dihydropyrimidine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H21 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-05 _chem_comp.pdbx_modified_date 2022-02-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 395.409 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y5V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LM4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y5V C21 C1 C 0 1 Y N N -11.703 -35.834 -14.249 6.220 2.822 0.296 C21 Y5V 1 Y5V C20 C2 C 0 1 Y N N -12.293 -36.859 -14.971 5.726 1.534 0.284 C20 Y5V 2 Y5V C19 C3 C 0 1 Y N N -13.668 -37.020 -14.942 4.365 1.314 0.067 C19 Y5V 3 Y5V C17 C4 C 0 1 N N N -14.330 -38.145 -15.733 3.828 -0.062 0.053 C17 Y5V 4 Y5V C14 C5 C 0 1 N N N -15.566 -38.927 -17.813 4.233 -2.378 0.133 C14 Y5V 5 Y5V C12 C6 C 0 1 N N N -15.615 -40.310 -17.258 2.783 -2.580 0.036 C12 Y5V 6 Y5V C22 C7 C 0 1 Y N N -12.489 -34.971 -13.499 5.370 3.895 0.093 C22 Y5V 7 Y5V C23 C8 C 0 1 Y N N -13.864 -35.134 -13.470 4.020 3.684 -0.128 C23 Y5V 8 Y5V C11 C9 C 0 1 N N N -15.006 -40.588 -15.927 1.975 -1.456 -0.051 C11 Y5V 9 Y5V C01 C10 C 0 1 N N N -9.774 -41.037 -11.737 -6.086 0.481 2.918 C01 Y5V 10 Y5V C03 C11 C 0 1 Y N N -12.084 -40.756 -11.401 -6.018 0.413 0.542 C03 Y5V 11 Y5V C04 C12 C 0 1 Y N N -12.502 -41.886 -12.088 -4.642 0.549 0.633 C04 Y5V 12 Y5V C05 C13 C 0 1 Y N N -13.713 -42.482 -11.769 -3.873 0.586 -0.515 C05 Y5V 13 Y5V C06 C14 C 0 1 N N N -14.177 -43.732 -12.519 -2.377 0.734 -0.414 C06 Y5V 14 Y5V C07 C15 C 0 1 N N N -15.416 -43.487 -13.375 -1.732 -0.651 -0.332 C07 Y5V 15 Y5V C09 C16 C 0 1 N N N -15.044 -41.988 -15.335 0.504 -1.601 -0.150 C09 Y5V 16 Y5V C24 C17 C 0 1 Y N N -14.453 -36.158 -14.192 3.512 2.401 -0.137 C24 Y5V 17 Y5V C25 C18 C 0 1 N N N -15.968 -36.341 -14.164 2.041 2.174 -0.373 C25 Y5V 18 Y5V C26 C19 C 0 1 Y N N -14.508 -41.946 -10.768 -4.474 0.486 -1.756 C26 Y5V 19 Y5V C27 C20 C 0 1 Y N N -14.092 -40.814 -10.085 -5.846 0.350 -1.854 C27 Y5V 20 Y5V C28 C21 C 0 1 Y N N -12.881 -40.219 -10.401 -6.623 0.313 -0.707 C28 Y5V 21 Y5V N08 N1 N 0 1 N N N -15.381 -42.155 -13.938 -0.277 -0.507 -0.234 N08 Y5V 22 Y5V N16 N2 N 0 1 N N N -14.933 -37.861 -17.060 4.699 -1.109 0.137 N16 Y5V 23 Y5V N18 N3 N 0 1 N N N -14.376 -39.519 -15.175 2.532 -0.235 -0.034 N18 Y5V 24 Y5V O02 O1 O 0 1 N N N -10.861 -40.153 -11.723 -6.775 0.372 1.671 O02 Y5V 25 Y5V O10 O2 O 0 1 N N N -14.797 -42.932 -16.005 0.003 -2.708 -0.156 O10 Y5V 26 Y5V O13 O3 O 0 1 N N N -16.226 -41.342 -17.985 2.250 -3.827 0.025 O13 Y5V 27 Y5V O15 O4 O 0 1 N N N -16.042 -38.692 -18.868 4.995 -3.326 0.211 O15 Y5V 28 Y5V O29 O5 O 0 1 N N N -12.462 -39.077 -9.710 -7.973 0.179 -0.802 O29 Y5V 29 Y5V H1 H1 H 0 1 N N N -10.631 -35.707 -14.270 7.272 2.994 0.469 H1 Y5V 30 Y5V H2 H2 H 0 1 N N N -11.682 -37.531 -15.555 6.391 0.698 0.443 H2 Y5V 31 Y5V H3 H3 H 0 1 N N N -12.028 -34.172 -12.938 5.761 4.901 0.108 H3 Y5V 32 Y5V H4 H4 H 0 1 N N N -14.476 -34.463 -12.885 3.362 4.525 -0.285 H4 Y5V 33 Y5V H5 H5 H 0 1 N N N -8.857 -40.488 -11.997 -5.375 -0.340 3.013 H5 Y5V 34 Y5V H6 H6 H 0 1 N N N -9.659 -41.492 -10.742 -5.553 1.431 2.958 H6 Y5V 35 Y5V H7 H7 H 0 1 N N N -9.953 -41.826 -12.483 -6.806 0.433 3.736 H7 Y5V 36 Y5V H8 H8 H 0 1 N N N -11.885 -42.302 -12.871 -4.170 0.627 1.602 H8 Y5V 37 Y5V H9 H9 H 0 1 N N N -14.408 -44.517 -11.784 -2.003 1.258 -1.294 H9 Y5V 38 Y5V H10 H10 H 0 1 N N N -13.360 -44.072 -13.173 -2.128 1.304 0.481 H10 Y5V 39 Y5V H11 H11 H 0 1 N N N -16.315 -43.594 -12.751 -2.105 -1.174 0.548 H11 Y5V 40 Y5V H12 H12 H 0 1 N N N -15.446 -44.225 -14.190 -1.981 -1.221 -1.227 H12 Y5V 41 Y5V H13 H13 H 0 1 N N N -16.241 -37.015 -13.338 1.535 2.048 0.584 H13 Y5V 42 Y5V H14 H14 H 0 1 N N N -16.452 -35.365 -14.016 1.620 3.032 -0.897 H14 Y5V 43 Y5V H15 H15 H 0 1 N N N -16.302 -36.775 -15.118 1.905 1.276 -0.977 H15 Y5V 44 Y5V H16 H16 H 0 1 N N N -15.451 -42.410 -10.520 -3.870 0.515 -2.651 H16 Y5V 45 Y5V H17 H17 H 0 1 N N N -14.712 -40.395 -9.306 -6.313 0.272 -2.825 H17 Y5V 46 Y5V H18 H18 H 0 1 N N N -15.587 -41.359 -13.369 0.123 0.377 -0.229 H18 Y5V 47 Y5V H19 H19 H 0 1 N N N -14.903 -36.934 -17.435 5.653 -0.943 0.200 H19 Y5V 48 Y5V H20 H20 H 0 1 N N N -16.558 -40.998 -18.806 2.905 -4.536 0.086 H20 Y5V 49 Y5V H21 H21 H 0 1 N N N -13.116 -38.840 -9.063 -8.448 1.020 -0.859 H21 Y5V 50 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y5V O15 C14 DOUB N N 1 Y5V O13 C12 SING N N 2 Y5V C14 C12 SING N N 3 Y5V C14 N16 SING N N 4 Y5V C12 C11 DOUB N N 5 Y5V N16 C17 SING N N 6 Y5V O10 C09 DOUB N N 7 Y5V C11 C09 SING N N 8 Y5V C11 N18 SING N N 9 Y5V C17 N18 DOUB N N 10 Y5V C17 C19 SING N N 11 Y5V C09 N08 SING N N 12 Y5V C20 C19 DOUB Y N 13 Y5V C20 C21 SING Y N 14 Y5V C19 C24 SING Y N 15 Y5V C21 C22 DOUB Y N 16 Y5V C24 C25 SING N N 17 Y5V C24 C23 DOUB Y N 18 Y5V N08 C07 SING N N 19 Y5V C22 C23 SING Y N 20 Y5V C07 C06 SING N N 21 Y5V C06 C05 SING N N 22 Y5V C04 C05 DOUB Y N 23 Y5V C04 C03 SING Y N 24 Y5V C05 C26 SING Y N 25 Y5V C01 O02 SING N N 26 Y5V O02 C03 SING N N 27 Y5V C03 C28 DOUB Y N 28 Y5V C26 C27 DOUB Y N 29 Y5V C28 C27 SING Y N 30 Y5V C28 O29 SING N N 31 Y5V C21 H1 SING N N 32 Y5V C20 H2 SING N N 33 Y5V C22 H3 SING N N 34 Y5V C23 H4 SING N N 35 Y5V C01 H5 SING N N 36 Y5V C01 H6 SING N N 37 Y5V C01 H7 SING N N 38 Y5V C04 H8 SING N N 39 Y5V C06 H9 SING N N 40 Y5V C06 H10 SING N N 41 Y5V C07 H11 SING N N 42 Y5V C07 H12 SING N N 43 Y5V C25 H13 SING N N 44 Y5V C25 H14 SING N N 45 Y5V C25 H15 SING N N 46 Y5V C26 H16 SING N N 47 Y5V C27 H17 SING N N 48 Y5V N08 H18 SING N N 49 Y5V N16 H19 SING N N 50 Y5V O13 H20 SING N N 51 Y5V O29 H21 SING N N 52 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y5V SMILES ACDLabs 12.01 "c1ccc(c(c1)C2=NC(=C(C(N2)=O)O)C(NCCc3cc(c(cc3)O)OC)=O)C" Y5V InChI InChI 1.03 "InChI=1S/C21H21N3O5/c1-12-5-3-4-6-14(12)19-23-17(18(26)21(28)24-19)20(27)22-10-9-13-7-8-15(25)16(11-13)29-2/h3-8,11,25-26H,9-10H2,1-2H3,(H,22,27)(H,23,24,28)" Y5V InChIKey InChI 1.03 KEGVYPYJMJWBAI-UHFFFAOYSA-N Y5V SMILES_CANONICAL CACTVS 3.385 "COc1cc(CCNC(=O)C2=C(O)C(=O)NC(=N2)c3ccccc3C)ccc1O" Y5V SMILES CACTVS 3.385 "COc1cc(CCNC(=O)C2=C(O)C(=O)NC(=N2)c3ccccc3C)ccc1O" Y5V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccccc1C2=NC(=C(C(=O)N2)O)C(=O)NCCc3ccc(c(c3)OC)O" Y5V SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccccc1C2=NC(=C(C(=O)N2)O)C(=O)NCCc3ccc(c(c3)OC)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y5V "SYSTEMATIC NAME" ACDLabs 12.01 "5-hydroxy-N-[2-(4-hydroxy-3-methoxyphenyl)ethyl]-2-(2-methylphenyl)-6-oxo-1,6-dihydropyrimidine-4-carboxamide" Y5V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[2-(3-methoxy-4-oxidanyl-phenyl)ethyl]-2-(2-methylphenyl)-5-oxidanyl-6-oxidanylidene-1~{H}-pyrimidine-4-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y5V "Create component" 2021-02-05 RCSB Y5V "Initial release" 2022-02-09 RCSB ##