data_Y5X # _chem_comp.id Y5X _chem_comp.name "2-chloro-N-(5-fluoropyridin-3-yl)-5-nitrobenzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H7 Cl F N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-05 _chem_comp.pdbx_modified_date 2024-04-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 295.654 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y5X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FKF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y5X C13 C1 C 0 1 Y N N N N N -5.059 0.930 14.710 3.294 0.582 0.071 C13 Y5X 1 Y5X C10 C2 C 0 1 Y N N N N N -4.958 4.710 9.525 -3.146 -0.057 0.465 C10 Y5X 2 Y5X N14 N1 N 1 1 N N N N N N -4.032 -0.101 14.619 4.125 1.803 0.175 N14 Y5X 3 Y5X C17 C3 C 0 1 Y N N N N N -5.586 1.232 15.945 3.900 -0.659 -0.021 C17 Y5X 4 Y5X C18 C4 C 0 1 Y N N N N N -6.560 2.215 16.012 3.132 -1.805 -0.119 C18 Y5X 5 Y5X C02 C5 C 0 1 N N N N N N -6.863 3.215 12.345 -0.338 -0.367 -0.030 C02 Y5X 6 Y5X C04 C6 C 0 1 Y N N N N N -6.010 4.541 10.415 -2.321 0.947 -0.034 C04 Y5X 7 Y5X C05 C7 C 0 1 Y N N N N N -7.222 5.141 10.086 -2.898 2.057 -0.638 C05 Y5X 8 Y5X C07 C8 C 0 1 Y N N N N N -6.374 6.048 8.161 -5.018 1.226 -0.287 C07 Y5X 9 Y5X C08 C9 C 0 1 Y N N N N N -5.140 5.479 8.394 -4.519 0.092 0.332 C08 Y5X 10 Y5X C11 C10 C 0 1 Y N N N N N -6.434 2.525 13.609 1.136 -0.469 -0.023 C11 Y5X 11 Y5X C12 C11 C 0 1 Y N N N N N -5.448 1.568 13.554 1.919 0.683 0.070 C12 Y5X 12 Y5X C19 C12 C 0 1 Y N N N N N -6.962 2.870 14.854 1.754 -1.718 -0.127 C19 Y5X 13 Y5X F09 F1 F 0 1 N N N N N N -4.113 5.668 7.520 -5.358 -0.862 0.791 F09 Y5X 14 Y5X N03 N2 N 0 1 N N N N N N -5.868 3.718 11.561 -0.930 0.840 0.071 N03 Y5X 15 Y5X N06 N3 N 0 1 Y N N N N N -7.399 5.894 8.997 -4.208 2.163 -0.739 N06 Y5X 16 Y5X O01 O1 O 0 1 N N N N N N -8.059 3.391 12.130 -1.016 -1.371 -0.127 O01 Y5X 17 Y5X O15 O2 O -1 1 N N N N N N -3.565 -0.361 13.520 3.593 2.895 0.256 O15 Y5X 18 Y5X O16 O3 O 0 1 N N N N N N -3.723 -0.691 15.645 5.339 1.714 0.181 O16 Y5X 19 Y5X H1 H1 H 0 1 N N N N N N -4.003 4.243 9.717 -2.728 -0.932 0.940 H1 Y5X 20 Y5X H2 H2 H 0 1 N N N N N N -5.251 0.719 16.834 4.977 -0.733 -0.016 H2 Y5X 21 Y5X H3 H3 H 0 1 N N N N N N -7.006 2.472 16.962 3.612 -2.771 -0.191 H3 Y5X 22 Y5X H4 H4 H 0 1 N N N N N N -8.064 4.990 10.746 -2.267 2.841 -1.029 H4 Y5X 23 Y5X H5 H5 H 0 1 N N N N N N -6.514 6.640 7.269 -6.086 1.348 -0.394 H5 Y5X 24 Y5X H6 H6 H 0 1 N N N N N N -4.983 1.319 12.612 1.448 1.652 0.151 H6 Y5X 25 Y5X H8 H8 H 0 1 N N N N N N -4.933 3.480 11.823 -0.392 1.633 0.216 H8 Y5X 26 Y5X CL1 CL1 CL 0 0 N Y N N N N -8.241 4.091 14.974 0.791 -3.158 -0.244 CL1 Y5X 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y5X F09 C08 SING N N 1 Y5X C07 C08 DOUB Y N 2 Y5X C07 N06 SING Y N 3 Y5X C08 C10 SING Y N 4 Y5X N06 C05 DOUB Y N 5 Y5X C10 C04 DOUB Y N 6 Y5X C05 C04 SING Y N 7 Y5X C04 N03 SING N N 8 Y5X N03 C02 SING N N 9 Y5X O01 C02 DOUB N N 10 Y5X C02 C11 SING N N 11 Y5X O15 N14 SING N N 12 Y5X C12 C11 DOUB Y N 13 Y5X C12 C13 SING Y N 14 Y5X C11 C19 SING Y N 15 Y5X N14 C13 SING N N 16 Y5X N14 O16 DOUB N N 17 Y5X C13 C17 DOUB Y N 18 Y5X C19 C18 DOUB Y N 19 Y5X C17 C18 SING Y N 20 Y5X C10 H1 SING N N 21 Y5X C17 H2 SING N N 22 Y5X C18 H3 SING N N 23 Y5X C05 H4 SING N N 24 Y5X C07 H5 SING N N 25 Y5X C12 H6 SING N N 26 Y5X N03 H8 SING N N 27 Y5X C19 CL1 SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y5X SMILES ACDLabs 12.01 "O=C(Nc1cc(F)cnc1)c1cc(ccc1Cl)[N+]([O-])=O" Y5X InChI InChI 1.06 "InChI=1S/C12H7ClFN3O3/c13-11-2-1-9(17(19)20)4-10(11)12(18)16-8-3-7(14)5-15-6-8/h1-6H,(H,16,18)" Y5X InChIKey InChI 1.06 YYVSYARVIWSRBD-UHFFFAOYSA-N Y5X SMILES_CANONICAL CACTVS 3.385 "[O-][N+](=O)c1ccc(Cl)c(c1)C(=O)Nc2cncc(F)c2" Y5X SMILES CACTVS 3.385 "[O-][N+](=O)c1ccc(Cl)c(c1)C(=O)Nc2cncc(F)c2" Y5X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1[N+](=O)[O-])C(=O)Nc2cc(cnc2)F)Cl" Y5X SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1[N+](=O)[O-])C(=O)Nc2cc(cnc2)F)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y5X "SYSTEMATIC NAME" ACDLabs 12.01 "2-chloro-N-(5-fluoropyridin-3-yl)-5-nitrobenzamide" Y5X "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-chloranyl-~{N}-(5-fluoranylpyridin-3-yl)-5-nitro-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y5X "Create component" 2023-01-05 RCSB Y5X "Initial release" 2024-04-17 RCSB #