data_Y5Y # _chem_comp.id Y5Y _chem_comp.name "cyclopropyl[(3S)-3-{[9-ethyl-8-(2-methylpyrimidin-5-yl)-9H-purin-6-yl]amino}pyrrolidin-1-yl]methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H24 N8 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-05 _chem_comp.pdbx_modified_date 2021-04-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 392.458 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y5Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LM2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y5Y C1 C1 C 0 1 N N N 32.617 16.069 32.943 4.766 2.778 -0.957 C1 Y5Y 1 Y5Y C2 C2 C 0 1 N N N 33.565 15.598 31.844 4.366 2.247 0.421 C2 Y5Y 2 Y5Y C4 C3 C 0 1 Y N N 34.942 13.524 32.430 3.003 0.131 0.148 C4 Y5Y 3 Y5Y C5 C4 C 0 1 Y N N 34.108 12.422 31.900 4.137 -0.814 0.054 C5 Y5Y 4 Y5Y C6 C5 C 0 1 Y N N 34.752 11.320 31.321 3.960 -2.178 0.308 C6 Y5Y 5 Y5Y C8 C6 C 0 1 Y N N 32.712 10.320 30.916 6.189 -2.526 -0.127 C8 Y5Y 6 Y5Y N10 N1 N 0 1 Y N N 32.051 11.338 31.457 6.401 -1.248 -0.370 N10 Y5Y 7 Y5Y C11 C7 C 0 1 Y N N 32.701 12.389 31.956 5.417 -0.369 -0.298 C11 Y5Y 8 Y5Y C16 C8 C 0 1 N N S 39.938 14.239 35.250 -2.754 0.401 0.082 C16 Y5Y 9 Y5Y C18 C9 C 0 1 N N N 40.372 13.011 36.086 -3.258 0.756 -1.342 C18 Y5Y 10 Y5Y C19 C10 C 0 1 N N N 41.122 12.152 35.041 -4.745 0.346 -1.295 C19 Y5Y 11 Y5Y C21 C11 C 0 1 N N N 42.533 12.756 33.076 -6.044 -1.231 0.159 C21 Y5Y 12 Y5Y C23 C12 C 0 1 N N N 43.047 13.782 32.096 -7.330 -0.890 -0.550 C23 Y5Y 13 Y5Y C24 C13 C 0 1 N N N 43.967 14.908 32.572 -8.604 -1.593 -0.079 C24 Y5Y 14 Y5Y C30 C14 C 0 1 Y N N 35.755 15.497 33.017 1.846 2.004 0.344 C30 Y5Y 15 Y5Y N3 N2 N 0 1 Y N N 34.697 14.874 32.410 3.118 1.488 0.308 N3 Y5Y 16 Y5Y N7 N3 N 0 1 Y N N 34.034 10.309 30.846 5.000 -2.988 0.207 N7 Y5Y 17 Y5Y C9 C15 C 0 1 N N N 31.955 9.142 30.362 7.344 -3.489 -0.223 C9 Y5Y 18 Y5Y N12 N4 N 0 1 Y N N 36.090 13.315 33.033 1.737 -0.201 0.084 N12 Y5Y 19 Y5Y C13 C16 C 0 1 Y N N 36.642 14.486 33.414 0.975 0.909 0.205 C13 Y5Y 20 Y5Y C14 C17 C 0 1 Y N N 37.833 14.864 34.075 -0.410 1.159 0.209 C14 Y5Y 21 Y5Y N15 N5 N 0 1 N N N 38.739 13.899 34.476 -1.316 0.122 0.076 N15 Y5Y 22 Y5Y N20 N6 N 0 1 N N N 41.675 13.103 34.057 -4.891 -0.641 -0.215 N20 Y5Y 23 Y5Y O22 O1 O 0 1 N N N 42.881 11.594 32.963 -6.048 -2.035 1.067 O22 Y5Y 24 Y5Y C25 C18 C 0 1 N N N 44.540 13.732 31.772 -8.386 -0.112 0.236 C25 Y5Y 25 Y5Y C26 C19 C 0 1 N N N 41.145 14.455 34.325 -3.569 -0.881 0.389 C26 Y5Y 26 Y5Y N27 N7 N 0 1 Y N N 38.066 16.159 34.278 -0.826 2.413 0.343 N27 Y5Y 27 Y5Y C28 C20 C 0 1 Y N N 37.196 17.076 33.894 0.031 3.409 0.470 C28 Y5Y 28 Y5Y N29 N8 N 0 1 Y N N 36.068 16.767 33.278 1.335 3.224 0.472 N29 Y5Y 29 Y5Y H1 H1 H 0 1 N N N 31.773 16.611 32.492 3.979 3.428 -1.339 H1 Y5Y 30 Y5Y H2 H2 H 0 1 N N N 32.239 15.198 33.499 5.695 3.342 -0.873 H2 Y5Y 31 Y5Y H3 H3 H 0 1 N N N 33.156 16.737 33.631 4.910 1.941 -1.640 H3 Y5Y 32 Y5Y H4 H4 H 0 1 N N N 33.937 16.472 31.290 5.153 1.597 0.803 H4 Y5Y 33 Y5Y H5 H5 H 0 1 N N N 33.019 14.934 31.158 4.222 3.084 1.105 H5 Y5Y 34 Y5Y H6 H6 H 0 1 N N N 35.830 11.293 31.261 2.989 -2.563 0.583 H6 Y5Y 35 Y5Y H7 H7 H 0 1 N N N 32.154 13.208 32.399 5.597 0.675 -0.507 H7 Y5Y 36 Y5Y H8 H8 H 0 1 N N N 39.776 15.114 35.897 -2.993 1.195 0.790 H8 Y5Y 37 Y5Y H9 H9 H 0 1 N N N 39.500 12.476 36.490 -3.158 1.825 -1.531 H9 Y5Y 38 Y5Y H10 H10 H 0 1 N N N 41.037 13.305 36.911 -2.720 0.181 -2.095 H10 Y5Y 39 Y5Y H11 H11 H 0 1 N N N 40.428 11.454 34.550 -5.364 1.218 -1.086 H11 Y5Y 40 Y5Y H12 H12 H 0 1 N N N 41.932 11.585 35.522 -5.038 -0.097 -2.247 H12 Y5Y 41 Y5Y H13 H13 H 0 1 N N N 42.381 14.029 31.256 -7.237 -0.678 -1.615 H13 Y5Y 42 Y5Y H14 H14 H 0 1 N N N 44.201 15.012 33.642 -9.350 -1.842 -0.833 H14 Y5Y 43 Y5Y H15 H15 H 0 1 N N N 43.899 15.905 32.113 -8.513 -2.302 0.744 H15 Y5Y 44 Y5Y H16 H16 H 0 1 N N N 32.666 8.406 29.958 7.833 -3.567 0.748 H16 Y5Y 45 Y5Y H17 H17 H 0 1 N N N 31.362 8.677 31.164 6.976 -4.470 -0.524 H17 Y5Y 46 Y5Y H18 H18 H 0 1 N N N 31.284 9.482 29.560 8.059 -3.127 -0.962 H18 Y5Y 47 Y5Y H19 H19 H 0 1 N N N 38.225 13.243 35.029 -1.000 -0.790 -0.021 H19 Y5Y 48 Y5Y H20 H20 H 0 1 N N N 45.186 12.992 32.268 -8.151 0.154 1.267 H20 Y5Y 49 Y5Y H21 H21 H 0 1 N N N 44.884 13.885 30.739 -8.988 0.613 -0.311 H21 Y5Y 50 Y5Y H22 H22 H 0 1 N N N 41.905 15.076 34.822 -3.094 -1.750 -0.067 H22 Y5Y 51 Y5Y H23 H23 H 0 1 N N N 40.831 14.939 33.388 -3.663 -1.021 1.466 H23 Y5Y 52 Y5Y H24 H24 H 0 1 N N N 37.414 18.115 34.090 -0.351 4.414 0.577 H24 Y5Y 53 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y5Y C9 C8 SING N N 1 Y5Y N7 C8 DOUB Y N 2 Y5Y N7 C6 SING Y N 3 Y5Y C8 N10 SING Y N 4 Y5Y C6 C5 DOUB Y N 5 Y5Y N10 C11 DOUB Y N 6 Y5Y C25 C23 SING N N 7 Y5Y C25 C24 SING N N 8 Y5Y C2 N3 SING N N 9 Y5Y C2 C1 SING N N 10 Y5Y C5 C11 SING Y N 11 Y5Y C5 C4 SING N N 12 Y5Y C23 C24 SING N N 13 Y5Y C23 C21 SING N N 14 Y5Y N3 C4 SING Y N 15 Y5Y N3 C30 SING Y N 16 Y5Y C4 N12 DOUB Y N 17 Y5Y O22 C21 DOUB N N 18 Y5Y C30 N29 DOUB Y N 19 Y5Y C30 C13 SING Y N 20 Y5Y N12 C13 SING Y N 21 Y5Y C21 N20 SING N N 22 Y5Y N29 C28 SING Y N 23 Y5Y C13 C14 DOUB Y N 24 Y5Y C28 N27 DOUB Y N 25 Y5Y N20 C26 SING N N 26 Y5Y N20 C19 SING N N 27 Y5Y C14 N27 SING Y N 28 Y5Y C14 N15 SING N N 29 Y5Y C26 C16 SING N N 30 Y5Y N15 C16 SING N N 31 Y5Y C19 C18 SING N N 32 Y5Y C16 C18 SING N N 33 Y5Y C1 H1 SING N N 34 Y5Y C1 H2 SING N N 35 Y5Y C1 H3 SING N N 36 Y5Y C2 H4 SING N N 37 Y5Y C2 H5 SING N N 38 Y5Y C6 H6 SING N N 39 Y5Y C11 H7 SING N N 40 Y5Y C16 H8 SING N N 41 Y5Y C18 H9 SING N N 42 Y5Y C18 H10 SING N N 43 Y5Y C19 H11 SING N N 44 Y5Y C19 H12 SING N N 45 Y5Y C23 H13 SING N N 46 Y5Y C24 H14 SING N N 47 Y5Y C24 H15 SING N N 48 Y5Y C9 H16 SING N N 49 Y5Y C9 H17 SING N N 50 Y5Y C9 H18 SING N N 51 Y5Y N15 H19 SING N N 52 Y5Y C25 H20 SING N N 53 Y5Y C25 H21 SING N N 54 Y5Y C26 H22 SING N N 55 Y5Y C26 H23 SING N N 56 Y5Y C28 H24 SING N N 57 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y5Y SMILES ACDLabs 12.01 "CCn4c(nc1c4ncnc1NC3CCN(C(C2CC2)=O)C3)c5cnc(nc5)C" Y5Y InChI InChI 1.03 "InChI=1S/C20H24N8O/c1-3-28-18(14-8-21-12(2)22-9-14)26-16-17(23-11-24-19(16)28)25-15-6-7-27(10-15)20(29)13-4-5-13/h8-9,11,13,15H,3-7,10H2,1-2H3,(H,23,24,25)/t15-/m0/s1" Y5Y InChIKey InChI 1.03 DADGJAZOHPBTCZ-HNNXBMFYSA-N Y5Y SMILES_CANONICAL CACTVS 3.385 "CCn1c2ncnc(N[C@H]3CCN(C3)C(=O)C4CC4)c2nc1c5cnc(C)nc5" Y5Y SMILES CACTVS 3.385 "CCn1c2ncnc(N[CH]3CCN(C3)C(=O)C4CC4)c2nc1c5cnc(C)nc5" Y5Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCn1c2c(c(ncn2)N[C@H]3CCN(C3)C(=O)C4CC4)nc1c5cnc(nc5)C" Y5Y SMILES "OpenEye OEToolkits" 2.0.7 "CCn1c2c(c(ncn2)NC3CCN(C3)C(=O)C4CC4)nc1c5cnc(nc5)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y5Y "SYSTEMATIC NAME" ACDLabs 12.01 "cyclopropyl[(3S)-3-{[9-ethyl-8-(2-methylpyrimidin-5-yl)-9H-purin-6-yl]amino}pyrrolidin-1-yl]methanone" Y5Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "cyclopropyl-[(3~{S})-3-[[9-ethyl-8-(2-methylpyrimidin-5-yl)purin-6-yl]amino]pyrrolidin-1-yl]methanone" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y5Y "Create component" 2021-02-05 RCSB Y5Y "Initial release" 2021-04-21 RCSB ##