data_Y61 # _chem_comp.id Y61 _chem_comp.name "N-[(1R)-1-(3-{5-[(acetylamino)methyl]thiophen-2-yl}phenyl)ethyl]-5-[(azetidin-3-yl)amino]-2-methylbenzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H30 N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-05 _chem_comp.pdbx_modified_date 2021-02-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 462.607 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y61 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LLZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y61 N03 N1 N 0 1 N N N 2.132 10.491 34.088 1.835 -0.854 -0.869 N03 Y61 1 Y61 C05 C1 C 0 1 Y N N 2.058 8.361 35.593 3.985 -1.648 -0.007 C05 Y61 2 Y61 C06 C2 C 0 1 Y N N 0.996 7.479 35.413 4.726 -2.682 0.566 C06 Y61 3 Y61 C07 C3 C 0 1 N N N -0.325 7.919 34.888 4.101 -4.039 0.760 C07 Y61 4 Y61 C08 C4 C 0 1 Y N N 1.193 6.140 35.728 6.033 -2.463 0.953 C08 Y61 5 Y61 C09 C5 C 0 1 Y N N 2.366 5.640 36.211 6.611 -1.220 0.777 C09 Y61 6 Y61 C10 C6 C 0 1 Y N N 3.474 6.464 36.422 5.881 -0.183 0.207 C10 Y61 7 Y61 C12 C7 C 0 1 N N N 5.953 6.359 37.123 7.858 1.294 0.448 C12 Y61 8 Y61 C13 C8 C 0 1 N N N 7.103 5.286 36.945 8.542 2.466 -0.279 C13 Y61 9 Y61 C15 C9 C 0 1 N N N 6.623 7.081 35.866 7.995 2.137 1.729 C15 Y61 10 Y61 C16 C10 C 0 1 Y N N 3.287 7.847 36.105 4.569 -0.393 -0.186 C16 Y61 11 Y61 C18 C11 C 0 1 Y N N 2.758 12.827 34.582 -0.339 0.187 -1.148 C18 Y61 12 Y61 C01 C12 C 0 1 N N N 2.074 12.155 32.235 0.435 -1.535 -2.756 C01 Y61 13 Y61 C02 C13 C 0 1 N N R 1.902 11.914 33.732 0.452 -1.087 -1.293 C02 Y61 14 Y61 C04 C14 C 0 1 N N N 1.824 9.799 35.265 2.587 -1.882 -0.429 C04 Y61 15 Y61 N11 N2 N 0 1 N N N 4.654 5.833 36.960 6.471 1.072 0.032 N11 Y61 16 Y61 N14 N3 N 0 1 N N N 7.256 5.754 35.493 9.111 2.822 1.040 N14 Y61 17 Y61 O17 O1 O 0 1 N N N 1.200 10.438 36.152 2.117 -3.002 -0.378 O17 Y61 18 Y61 C19 C15 C 0 1 Y N N 4.143 12.764 34.408 0.233 1.398 -1.496 C19 Y61 19 Y61 C20 C16 C 0 1 Y N N 4.972 13.587 35.169 -0.489 2.572 -1.371 C20 Y61 20 Y61 C21 C17 C 0 1 Y N N 4.456 14.476 36.127 -1.785 2.542 -0.900 C21 Y61 21 Y61 C22 C18 C 0 1 Y N N 3.052 14.597 36.358 -2.368 1.323 -0.548 C22 Y61 22 Y61 C23 C19 C 0 1 Y N N 2.495 15.508 37.397 -3.757 1.283 -0.042 C23 Y61 23 Y61 C24 C20 C 0 1 Y N N 3.066 16.166 38.437 -4.558 2.355 0.117 C24 Y61 24 Y61 C25 C21 C 0 1 Y N N 2.200 16.958 39.301 -5.816 2.068 0.605 C25 Y61 25 Y61 C26 C22 C 0 1 Y N N 0.880 16.926 38.968 -6.048 0.774 0.846 C26 Y61 26 Y61 C27 C23 C 0 1 N N N -0.340 17.609 39.605 -7.339 0.209 1.380 C27 Y61 27 Y61 N28 N4 N 0 1 N N N -0.704 19.034 39.255 -8.222 -0.131 0.262 N28 Y61 28 Y61 C29 C24 C 0 1 N N N -1.226 20.033 40.084 -9.441 -0.655 0.501 C29 Y61 29 Y61 C30 C25 C 0 1 N N N -1.505 19.824 41.514 -10.350 -1.005 -0.649 C30 Y61 30 Y61 O31 O2 O 0 1 N N N -1.487 21.193 39.646 -9.805 -0.846 1.642 O31 Y61 31 Y61 S32 S1 S 0 1 Y N N 0.747 15.861 37.527 -4.622 -0.171 0.438 S32 Y61 32 Y61 C33 C26 C 0 1 Y N N 2.261 13.724 35.551 -1.635 0.143 -0.675 C33 Y61 33 Y61 H1 H1 H 0 1 N N N 2.575 9.943 33.378 2.210 0.039 -0.910 H1 Y61 34 Y61 H2 H2 H 0 1 N N N -0.328 7.843 33.791 4.172 -4.608 -0.167 H2 Y61 35 Y61 H3 H3 H 0 1 N N N -1.116 7.277 35.302 4.625 -4.571 1.554 H3 Y61 36 Y61 H4 H4 H 0 1 N N N -0.508 8.963 35.184 3.052 -3.920 1.034 H4 Y61 37 Y61 H5 H5 H 0 1 N N N 0.370 5.456 35.582 6.605 -3.264 1.396 H5 Y61 38 Y61 H6 H6 H 0 1 N N N 2.440 4.586 36.435 7.634 -1.054 1.083 H6 Y61 39 Y61 H7 H7 H 0 1 N N N 6.090 6.948 38.042 8.450 0.379 0.459 H7 Y61 40 Y61 H8 H8 H 0 1 N N N 6.773 4.242 37.055 9.288 2.154 -1.010 H8 Y61 41 Y61 H9 H9 H 0 1 N N N 7.988 5.459 37.575 7.845 3.206 -0.672 H9 Y61 42 Y61 H10 H10 H 0 1 N N N 7.343 7.871 36.125 7.138 2.782 1.924 H10 Y61 43 Y61 H11 H11 H 0 1 N N N 5.905 7.467 35.127 8.303 1.562 2.602 H11 Y61 44 Y61 H12 H12 H 0 1 N N N 4.110 8.530 36.260 4.000 0.411 -0.629 H12 Y61 45 Y61 H13 H13 H 0 1 N N N 1.896 13.217 32.011 -0.594 -1.709 -3.071 H13 Y61 46 Y61 H14 H14 H 0 1 N N N 3.097 11.884 31.935 0.880 -0.759 -3.378 H14 Y61 47 Y61 H15 H15 H 0 1 N N N 1.353 11.538 31.679 1.008 -2.457 -2.860 H15 Y61 48 Y61 H16 H16 H 0 1 N N N 0.853 12.144 33.972 0.007 -1.864 -0.670 H16 Y61 49 Y61 H17 H17 H 0 1 N N N 4.385 5.549 37.880 5.962 1.795 -0.366 H17 Y61 50 Y61 H18 H18 H 0 1 N N N 6.729 5.220 34.833 9.074 3.818 1.193 H18 Y61 51 Y61 H20 H20 H 0 1 N N N 4.569 12.081 33.688 1.247 1.427 -1.865 H20 Y61 52 Y61 H21 H21 H 0 1 N N N 6.040 13.540 35.018 -0.036 3.514 -1.643 H21 Y61 53 Y61 H22 H22 H 0 1 N N N 5.138 15.083 36.703 -2.347 3.459 -0.802 H22 Y61 54 Y61 H23 H23 H 0 1 N N N 4.129 16.105 38.619 -4.241 3.360 -0.119 H23 Y61 55 Y61 H24 H24 H 0 1 N N N 2.576 17.526 40.139 -6.558 2.832 0.781 H24 Y61 56 Y61 H25 H25 H 0 1 N N N -1.213 16.991 39.350 -7.129 -0.688 1.962 H25 Y61 57 Y61 H26 H26 H 0 1 N N N -0.179 17.585 40.693 -7.824 0.950 2.015 H26 Y61 58 Y61 H27 H27 H 0 1 N N N -0.551 19.298 38.303 -7.931 0.022 -0.651 H27 Y61 59 Y61 H28 H28 H 0 1 N N N -1.904 20.752 41.950 -9.854 -0.764 -1.590 H28 Y61 60 Y61 H29 H29 H 0 1 N N N -2.245 19.018 41.629 -10.578 -2.070 -0.621 H29 Y61 61 Y61 H30 H30 H 0 1 N N N -0.575 19.546 42.032 -11.274 -0.432 -0.568 H30 Y61 62 Y61 H31 H31 H 0 1 N N N 1.191 13.753 35.695 -2.082 -0.803 -0.409 H31 Y61 63 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y61 C01 C02 SING N N 1 Y61 C02 N03 SING N N 2 Y61 C02 C18 SING N N 3 Y61 N03 C04 SING N N 4 Y61 C19 C18 DOUB Y N 5 Y61 C19 C20 SING Y N 6 Y61 C18 C33 SING Y N 7 Y61 C07 C06 SING N N 8 Y61 C20 C21 DOUB Y N 9 Y61 C04 C05 SING N N 10 Y61 C04 O17 DOUB N N 11 Y61 C06 C05 DOUB Y N 12 Y61 C06 C08 SING Y N 13 Y61 N14 C15 SING N N 14 Y61 N14 C13 SING N N 15 Y61 C33 C22 DOUB Y N 16 Y61 C05 C16 SING Y N 17 Y61 C08 C09 DOUB Y N 18 Y61 C15 C12 SING N N 19 Y61 C16 C10 DOUB Y N 20 Y61 C21 C22 SING Y N 21 Y61 C09 C10 SING Y N 22 Y61 C22 C23 SING N N 23 Y61 C10 N11 SING N N 24 Y61 C13 C12 SING N N 25 Y61 N11 C12 SING N N 26 Y61 C23 S32 SING Y N 27 Y61 C23 C24 DOUB Y N 28 Y61 S32 C26 SING Y N 29 Y61 C24 C25 SING Y N 30 Y61 C26 C25 DOUB Y N 31 Y61 C26 C27 SING N N 32 Y61 N28 C27 SING N N 33 Y61 N28 C29 SING N N 34 Y61 O31 C29 DOUB N N 35 Y61 C29 C30 SING N N 36 Y61 N03 H1 SING N N 37 Y61 C07 H2 SING N N 38 Y61 C07 H3 SING N N 39 Y61 C07 H4 SING N N 40 Y61 C08 H5 SING N N 41 Y61 C09 H6 SING N N 42 Y61 C12 H7 SING N N 43 Y61 C13 H8 SING N N 44 Y61 C13 H9 SING N N 45 Y61 C15 H10 SING N N 46 Y61 C15 H11 SING N N 47 Y61 C16 H12 SING N N 48 Y61 C01 H13 SING N N 49 Y61 C01 H14 SING N N 50 Y61 C01 H15 SING N N 51 Y61 C02 H16 SING N N 52 Y61 N11 H17 SING N N 53 Y61 N14 H18 SING N N 54 Y61 C19 H20 SING N N 55 Y61 C20 H21 SING N N 56 Y61 C21 H22 SING N N 57 Y61 C24 H23 SING N N 58 Y61 C25 H24 SING N N 59 Y61 C27 H25 SING N N 60 Y61 C27 H26 SING N N 61 Y61 N28 H27 SING N N 62 Y61 C30 H28 SING N N 63 Y61 C30 H29 SING N N 64 Y61 C30 H30 SING N N 65 Y61 C33 H31 SING N N 66 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y61 SMILES ACDLabs 12.01 "N(C(c1cc(ccc1C)NC2CNC2)=O)C(c3cc(ccc3)c4sc(cc4)CNC(C)=O)C" Y61 InChI InChI 1.03 "InChI=1S/C26H30N4O2S/c1-16-7-8-21(30-22-13-27-14-22)12-24(16)26(32)29-17(2)19-5-4-6-20(11-19)25-10-9-23(33-25)15-28-18(3)31/h4-12,17,22,27,30H,13-15H2,1-3H3,(H,28,31)(H,29,32)/t17-/m1/s1" Y61 InChIKey InChI 1.03 XOTUFJPCITWJHW-QGZVFWFLSA-N Y61 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](NC(=O)c1cc(NC2CNC2)ccc1C)c3cccc(c3)c4sc(CNC(C)=O)cc4" Y61 SMILES CACTVS 3.385 "C[CH](NC(=O)c1cc(NC2CNC2)ccc1C)c3cccc(c3)c4sc(CNC(C)=O)cc4" Y61 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1C(=O)N[C@H](C)c2cccc(c2)c3ccc(s3)CNC(=O)C)NC4CNC4" Y61 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1C(=O)NC(C)c2cccc(c2)c3ccc(s3)CNC(=O)C)NC4CNC4" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y61 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(1R)-1-(3-{5-[(acetylamino)methyl]thiophen-2-yl}phenyl)ethyl]-5-[(azetidin-3-yl)amino]-2-methylbenzamide" Y61 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(1~{R})-1-[3-[5-(acetamidomethyl)thiophen-2-yl]phenyl]ethyl]-5-(azetidin-3-ylamino)-2-methyl-benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y61 "Create component" 2021-02-05 RCSB Y61 "Initial release" 2021-02-24 RCSB ##