data_Y63 # _chem_comp.id Y63 _chem_comp.name "4-{(1R,5S)-3-[(7P)-7-(8-ethynylnaphthalen-1-yl)-8-fluoro-2-{[(4s,7as)-tetrahydro-1H-pyrrolizin-7a(5H)-yl]methoxy}pyrido[4,3-d]pyrimidin-4-yl]-3,8-diazabicyclo[3.2.1]octan-8-yl}-4-oxobutanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C37 H37 F N6 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-12 _chem_comp.pdbx_modified_date 2024-03-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 648.726 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y63 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8T4V _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y63 C10 C1 C 0 1 Y N N N N N 3.341 15.763 38.058 -5.028 1.482 -1.071 C10 Y63 1 Y63 C13 C2 C 0 1 N N N N N N 4.955 13.106 35.730 -2.996 1.383 1.919 C13 Y63 2 Y63 C15 C3 C 0 1 Y N N N N N 7.525 15.310 37.971 -0.897 1.232 -0.268 C15 Y63 3 Y63 C17 C4 C 0 1 N N N N N N 11.303 13.354 36.215 2.280 -0.071 1.117 C17 Y63 4 Y63 C20 C5 C 0 1 N N N N N N 11.521 15.607 37.267 1.835 2.349 1.497 C20 Y63 5 Y63 C21 C6 C 0 1 N N R N N N 12.038 14.745 36.149 2.898 1.247 1.640 C21 Y63 6 Y63 C24 C7 C 0 1 N N N N N N 13.969 16.131 34.504 6.170 2.242 -0.241 C24 Y63 7 Y63 C01 C8 C 0 1 N N N N N N 3.893 13.422 36.168 -4.137 1.475 1.658 C01 Y63 8 Y63 C02 C9 C 0 1 Y N N N N N 2.524 13.823 36.714 -5.528 1.588 1.338 C02 Y63 9 Y63 C03 C10 C 0 1 Y N N N N N 1.418 13.081 36.334 -6.473 1.696 2.348 C03 Y63 10 Y63 C04 C11 C 0 1 Y N N N N N 0.139 13.364 36.765 -7.824 1.806 2.044 C04 Y63 11 Y63 C05 C12 C 0 1 Y N N N N N -0.082 14.422 37.606 -8.258 1.809 0.752 C05 Y63 12 Y63 C06 C13 C 0 1 Y N N N N N 1.014 15.170 38.009 -7.334 1.702 -0.303 C06 Y63 13 Y63 C07 C14 C 0 1 Y N N N N N 0.699 16.208 38.855 -7.760 1.704 -1.643 C07 Y63 14 Y63 C08 C15 C 0 1 Y N N N N N 1.694 17.022 39.311 -6.847 1.594 -2.649 C08 Y63 15 Y63 C09 C16 C 0 1 Y N N N N N 2.982 16.781 38.929 -5.489 1.488 -2.378 C09 Y63 16 Y63 C11 C17 C 0 1 Y N N N N N 4.847 15.666 37.874 -3.579 1.369 -0.790 C11 Y63 17 Y63 C12 C18 C 0 1 Y N N N N N 5.433 14.718 38.690 -3.004 0.110 -0.681 C12 Y63 18 Y63 C14 C19 C 0 1 Y N N N N N 6.752 14.521 38.741 -1.629 0.025 -0.414 C14 Y63 19 Y63 C16 C20 C 0 1 Y N N N N N 6.944 16.317 37.174 -1.564 2.454 -0.394 C16 Y63 20 Y63 C18 C21 C 0 1 Y N N N N N 8.919 15.144 37.974 0.491 1.145 -0.004 C18 Y63 21 Y63 C19 C22 C 0 1 N N N N N N 16.085 17.204 33.899 8.459 2.980 -0.843 C19 Y63 22 Y63 C23 C23 C 0 1 N N N N N N 12.523 15.909 34.082 5.225 1.990 0.906 C23 Y63 23 Y63 C25 C24 C 0 1 N N N N N N 14.604 17.144 33.555 7.515 2.728 0.303 C25 Y63 24 Y63 C30 C25 C 0 1 N N S N N N 10.430 14.931 34.693 3.334 1.260 -0.643 C30 Y63 25 Y63 C31 C26 C 0 1 N N N N N N 10.283 13.455 35.223 2.570 -0.063 -0.399 C31 Y63 26 Y63 C34 C27 C 0 1 N N N N N N 9.469 15.854 35.389 2.291 2.362 -0.891 C34 Y63 27 Y63 C36 C28 C 0 1 Y N N N N N 8.650 13.498 39.503 0.311 -1.164 -0.051 C36 Y63 28 Y63 C38 C29 C 0 1 N N N N N N 10.576 12.630 40.607 0.117 -3.529 -0.102 C38 Y63 29 Y63 C39 C30 C 0 1 N N N N N N 10.867 11.915 41.938 0.983 -4.780 0.057 C39 Y63 30 Y63 C41 C31 C 0 1 N N N N N N 9.275 11.677 43.660 0.742 -6.798 -1.218 C41 Y63 31 Y63 C42 C32 C 0 1 N N N N N N 9.791 10.260 43.294 1.503 -5.769 -2.091 C42 Y63 32 Y63 C43 C33 C 0 1 N N N N N N 10.333 10.480 41.878 2.091 -4.819 -1.015 C43 Y63 33 Y63 C44 C34 C 0 1 N N N N N N 11.202 13.002 44.015 0.247 -6.783 1.149 C44 Y63 34 Y63 C45 C35 C 0 1 N N N N N N 12.579 12.974 43.260 1.584 -6.329 1.822 C45 Y63 35 Y63 C46 C36 C 0 1 N N N N N N 12.362 11.879 42.208 1.634 -4.823 1.455 C46 Y63 36 Y63 C48 C37 C 0 1 Y N N N N N 2.342 14.891 37.599 -5.954 1.590 -0.011 C48 Y63 37 Y63 F13 F1 F 0 1 N N N N N N 4.624 13.895 39.433 -3.750 -1.006 -0.828 F13 Y63 38 Y63 N17 N1 N 0 1 Y N N N N N 5.581 16.512 37.151 -2.853 2.480 -0.645 N17 Y63 39 Y63 N19 N2 N 0 1 N N N N N N 9.780 15.998 37.159 1.255 2.281 0.148 N19 Y63 40 Y63 N22 N3 N 0 1 N N N N N N 11.657 15.201 34.984 3.973 1.553 0.664 N22 Y63 41 Y63 N35 N4 N 0 1 Y N N N N N 9.489 14.233 38.784 1.036 -0.060 0.094 N35 Y63 42 Y63 N40 N5 N 0 1 N N N N N N 10.204 12.613 43.001 0.172 -6.006 -0.107 N40 Y63 43 Y63 N47 N6 N 0 1 Y N N N N N 7.331 13.597 39.513 -0.985 -1.142 -0.293 N47 Y63 44 Y63 O01 O1 O 0 1 N N N N N N 16.464 17.940 34.845 8.095 2.790 -1.980 O01 Y63 45 Y63 O03 O2 O 0 1 N N N N N N 16.912 16.509 33.245 9.706 3.415 -0.603 O03 Y63 46 Y63 O29 O3 O 0 1 N N N N N N 12.119 16.290 33.025 5.591 2.181 2.046 O29 Y63 47 Y63 O37 O4 O 0 1 N N N N N N 9.207 12.522 40.359 0.929 -2.364 0.060 O37 Y63 48 Y63 H1 H1 H 0 1 N N N N N N 5.900 12.825 35.340 -1.976 1.301 2.154 H1 Y63 49 Y63 H2 H2 H 0 1 N N N N N N 11.997 12.534 35.980 2.758 -0.929 1.591 H2 Y63 50 Y63 H3 H3 H 0 1 N N N N N N 10.865 13.190 37.211 1.205 -0.085 1.299 H3 Y63 51 Y63 H4 H4 H 0 1 N N N N N N 11.696 15.080 38.216 1.051 2.198 2.239 H4 Y63 52 Y63 H5 H5 H 0 1 N N N N N N 12.086 16.551 37.262 2.298 3.324 1.648 H5 Y63 53 Y63 H6 H6 H 0 1 N N N N N N 13.124 14.597 36.240 3.265 1.157 2.663 H6 Y63 54 Y63 H7 H7 H 0 1 N N N N N N 13.999 16.518 35.533 6.317 1.318 -0.800 H7 Y63 55 Y63 H8 H8 H 0 1 N N N N N N 14.520 15.180 34.453 5.748 3.001 -0.899 H8 Y63 56 Y63 H9 H9 H 0 1 N N N N N N 1.564 12.242 35.670 -6.155 1.695 3.380 H9 Y63 57 Y63 H10 H10 H 0 1 N N N N N N -0.689 12.751 36.439 -8.543 1.889 2.845 H10 Y63 58 Y63 H11 H11 H 0 1 N N N N N N -1.078 14.666 37.945 -9.313 1.895 0.538 H11 Y63 59 Y63 H12 H12 H 0 1 N N N N N N -0.325 16.377 39.155 -8.811 1.788 -1.874 H12 Y63 60 Y63 H13 H13 H 0 1 N N N N N N 1.465 17.849 39.967 -7.186 1.597 -3.674 H13 Y63 61 Y63 H14 H14 H 0 1 N N N N N N 3.761 17.415 39.325 -4.785 1.411 -3.194 H14 Y63 62 Y63 H15 H15 H 0 1 N N N N N N 7.580 16.947 36.570 -1.019 3.380 -0.285 H15 Y63 63 Y63 H16 H16 H 0 1 N N N N N N 14.471 16.821 32.512 7.367 3.652 0.862 H16 Y63 64 Y63 H17 H17 H 0 1 N N N N N N 14.143 18.133 33.694 7.936 1.969 0.962 H17 Y63 65 Y63 H18 H18 H 0 1 N N N N N N 10.232 14.939 33.611 4.053 1.179 -1.459 H18 Y63 66 Y63 H19 H19 H 0 1 N N N N N N 10.448 12.728 34.414 3.190 -0.917 -0.671 H19 Y63 67 Y63 H20 H20 H 0 1 N N N N N N 9.288 13.293 35.664 1.638 -0.073 -0.964 H20 Y63 68 Y63 H21 H21 H 0 1 N N N N N N 9.554 16.853 34.937 2.775 3.338 -0.849 H21 Y63 69 Y63 H22 H22 H 0 1 N N N N N N 8.448 15.471 35.243 1.838 2.222 -1.872 H22 Y63 70 Y63 H24 H24 H 0 1 N N N N N N 10.861 13.690 40.681 -0.334 -3.523 -1.094 H24 Y63 71 Y63 H25 H25 H 0 1 N N N N N N 11.143 12.153 39.794 -0.668 -3.533 0.654 H25 Y63 72 Y63 H26 H26 H 0 1 N N N N N N 8.251 11.823 43.285 -0.054 -7.269 -1.795 H26 Y63 73 Y63 H27 H27 H 0 1 N N N N N N 9.290 11.823 44.750 1.430 -7.551 -0.834 H27 Y63 74 Y63 H28 H28 H 0 1 N N N N N N 10.586 9.933 43.981 2.296 -6.252 -2.661 H28 Y63 75 Y63 H29 H29 H 0 1 N N N N N N 8.975 9.523 43.300 0.819 -5.236 -2.751 H29 Y63 76 Y63 H30 H30 H 0 1 N N N N N N 9.533 10.386 41.129 2.261 -3.826 -1.429 H30 Y63 77 Y63 H31 H31 H 0 1 N N N N N N 11.138 9.767 41.647 3.013 -5.229 -0.602 H31 Y63 78 Y63 H32 H32 H 0 1 N N N N N N 11.204 12.286 44.850 0.264 -7.856 0.956 H32 Y63 79 Y63 H33 H33 H 0 1 N N N N N N 10.991 14.011 44.398 -0.603 -6.524 1.780 H33 Y63 80 Y63 H34 H34 H 0 1 N N N N N N 12.792 13.944 42.786 1.552 -6.487 2.900 H34 Y63 81 Y63 H35 H35 H 0 1 N N N N N N 13.401 12.712 43.943 2.438 -6.841 1.379 H35 Y63 82 Y63 H36 H36 H 0 1 N N N N N N 12.665 10.896 42.599 2.664 -4.471 1.410 H36 Y63 83 Y63 H37 H37 H 0 1 N N N N N N 12.930 12.100 41.292 1.055 -4.234 2.166 H37 Y63 84 Y63 H40 H40 H 0 1 N N N N N N 17.786 16.650 33.588 10.275 3.562 -1.370 H40 Y63 85 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y63 C10 C09 SING Y N 1 Y63 C10 C11 SING N N 2 Y63 C10 C48 DOUB Y N 3 Y63 C13 C01 TRIP N N 4 Y63 C15 C14 DOUB Y N 5 Y63 C15 C16 SING Y N 6 Y63 C15 C18 SING Y N 7 Y63 C17 C21 SING N N 8 Y63 C17 C31 SING N N 9 Y63 C20 C21 SING N N 10 Y63 C21 N22 SING N N 11 Y63 C24 C23 SING N N 12 Y63 C24 C25 SING N N 13 Y63 C01 C02 SING N N 14 Y63 C02 C03 DOUB Y N 15 Y63 C02 C48 SING Y N 16 Y63 C03 C04 SING Y N 17 Y63 C04 C05 DOUB Y N 18 Y63 C05 C06 SING Y N 19 Y63 C06 C07 DOUB Y N 20 Y63 C06 C48 SING Y N 21 Y63 C07 C08 SING Y N 22 Y63 C08 C09 DOUB Y N 23 Y63 C11 C12 DOUB Y N 24 Y63 C11 N17 SING Y N 25 Y63 C12 C14 SING Y N 26 Y63 C12 F13 SING N N 27 Y63 C14 N47 SING Y N 28 Y63 C16 N17 DOUB Y N 29 Y63 C18 N19 SING N N 30 Y63 C18 N35 DOUB Y N 31 Y63 C19 C25 SING N N 32 Y63 C19 O01 DOUB N N 33 Y63 C19 O03 SING N N 34 Y63 C23 N22 SING N N 35 Y63 C23 O29 DOUB N N 36 Y63 C30 C31 SING N N 37 Y63 C30 C34 SING N N 38 Y63 C30 N22 SING N N 39 Y63 C36 N35 SING Y N 40 Y63 C36 N47 DOUB Y N 41 Y63 C36 O37 SING N N 42 Y63 C38 C39 SING N N 43 Y63 C38 O37 SING N N 44 Y63 C39 C43 SING N N 45 Y63 C39 C46 SING N N 46 Y63 C39 N40 SING N N 47 Y63 C41 C42 SING N N 48 Y63 C41 N40 SING N N 49 Y63 C42 C43 SING N N 50 Y63 C44 C45 SING N N 51 Y63 C44 N40 SING N N 52 Y63 C45 C46 SING N N 53 Y63 N19 C20 SING N N 54 Y63 C13 H1 SING N N 55 Y63 C17 H2 SING N N 56 Y63 C17 H3 SING N N 57 Y63 C20 H4 SING N N 58 Y63 C20 H5 SING N N 59 Y63 C21 H6 SING N N 60 Y63 C24 H7 SING N N 61 Y63 C24 H8 SING N N 62 Y63 C03 H9 SING N N 63 Y63 C04 H10 SING N N 64 Y63 C05 H11 SING N N 65 Y63 C07 H12 SING N N 66 Y63 C08 H13 SING N N 67 Y63 C09 H14 SING N N 68 Y63 C16 H15 SING N N 69 Y63 C25 H16 SING N N 70 Y63 C25 H17 SING N N 71 Y63 C30 H18 SING N N 72 Y63 C31 H19 SING N N 73 Y63 C31 H20 SING N N 74 Y63 C34 H21 SING N N 75 Y63 C34 H22 SING N N 76 Y63 C38 H24 SING N N 77 Y63 C38 H25 SING N N 78 Y63 C41 H26 SING N N 79 Y63 C41 H27 SING N N 80 Y63 C42 H28 SING N N 81 Y63 C42 H29 SING N N 82 Y63 C43 H30 SING N N 83 Y63 C43 H31 SING N N 84 Y63 C44 H32 SING N N 85 Y63 C44 H33 SING N N 86 Y63 C45 H34 SING N N 87 Y63 C45 H35 SING N N 88 Y63 C46 H36 SING N N 89 Y63 C46 H37 SING N N 90 Y63 O03 H40 SING N N 91 Y63 N19 C34 SING N N 92 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y63 SMILES ACDLabs 12.01 "O=C(O)CCC(=O)N1C2CCC1CN(C2)c1nc(nc2c(F)c(ncc21)c1cccc2cccc(C#C)c21)OCC12CCCN2CCC1" Y63 InChI InChI 1.06 "InChI=1S/C37H37FN6O4/c1-2-23-7-3-8-24-9-4-10-27(31(23)24)33-32(38)34-28(19-39-33)35(41-36(40-34)48-22-37-15-5-17-43(37)18-6-16-37)42-20-25-11-12-26(21-42)44(25)29(45)13-14-30(46)47/h1,3-4,7-10,19,25-26H,5-6,11-18,20-22H2,(H,46,47)/t25-,26+" Y63 InChIKey InChI 1.06 GUVKCXDNOZPYFC-WMPKNSHKSA-N Y63 SMILES_CANONICAL CACTVS 3.385 "OC(=O)CCC(=O)N1[C@@H]2CC[C@H]1CN(C2)c3nc(OCC45CCCN4CCC5)nc6c(F)c(ncc36)c7cccc8cccc(C#C)c78" Y63 SMILES CACTVS 3.385 "OC(=O)CCC(=O)N1[CH]2CC[CH]1CN(C2)c3nc(OCC45CCCN4CCC5)nc6c(F)c(ncc36)c7cccc8cccc(C#C)c78" Y63 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C#Cc1cccc2c1c(ccc2)c3c(c4c(cn3)c(nc(n4)OCC56CCCN5CCC6)N7C[C@H]8CC[C@@H](C7)N8C(=O)CCC(=O)O)F" Y63 SMILES "OpenEye OEToolkits" 2.0.7 "C#Cc1cccc2c1c(ccc2)c3c(c4c(cn3)c(nc(n4)OCC56CCCN5CCC6)N7CC8CCC(C7)N8C(=O)CCC(=O)O)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y63 "SYSTEMATIC NAME" ACDLabs 12.01 "4-{(1R,5S)-3-[(7P)-7-(8-ethynylnaphthalen-1-yl)-8-fluoro-2-{[(4s,7as)-tetrahydro-1H-pyrrolizin-7a(5H)-yl]methoxy}pyrido[4,3-d]pyrimidin-4-yl]-3,8-diazabicyclo[3.2.1]octan-8-yl}-4-oxobutanoic acid" Y63 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[(1~{R},5~{S})-3-[7-(8-ethynylnaphthalen-1-yl)-8-fluoranyl-2-(1,2,3,5,6,7-hexahydropyrrolizin-8-ylmethoxy)pyrido[4,3-d]pyrimidin-4-yl]-3,8-diazabicyclo[3.2.1]octan-8-yl]-4-oxidanylidene-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y63 "Create component" 2023-06-12 RCSB Y63 "Initial release" 2024-03-13 RCSB #