data_Y64 # _chem_comp.id Y64 _chem_comp.name "(1S,2S)-2-((S)-2-(((((1R,3R,5S)-bicyclo[3.3.1]non-6-en-3-yl)methoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H39 N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 529.647 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y64 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LKV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y64 C12 C1 C 0 1 N N N N N N 10.628 21.587 27.970 -1.293 -0.177 0.921 C12 Y64 1 Y64 C14 C2 C 0 1 N N N N N N 13.068 21.963 28.397 -0.378 -1.311 -1.086 C14 Y64 2 Y64 C15 C3 C 0 1 N N N N N N 14.419 22.489 27.969 0.770 -1.308 -2.098 C15 Y64 3 Y64 C16 C4 C 0 1 N N N N N N 15.473 22.176 29.030 0.563 -2.440 -3.106 C16 Y64 4 Y64 C17 C5 C 0 1 N N N N N N 14.887 21.911 26.659 0.796 0.033 -2.835 C17 Y64 5 Y64 C19 C6 C 0 1 N N N N N N 10.830 24.021 26.153 2.308 -0.302 0.306 C19 Y64 6 Y64 C21 C7 C 0 1 N N N N N N 9.339 25.767 25.420 4.689 -0.255 0.463 C21 Y64 7 Y64 C24 C8 C 0 1 N N R N N N 6.730 27.908 24.863 7.180 1.322 0.944 C24 Y64 8 Y64 C25 C9 C 0 1 N N N N N N 6.871 29.008 25.903 8.151 0.486 0.109 C25 Y64 9 Y64 C26 C10 C 0 1 N N S N N N 8.248 28.868 26.539 7.368 -0.663 -0.538 C26 Y64 10 Y64 C02 C11 C 0 1 N N N N N N 6.567 20.958 24.892 -2.995 2.670 -0.291 C02 Y64 11 Y64 C04 C12 C 0 1 N N N N N N 5.650 22.702 26.263 -4.829 3.596 -1.375 C04 Y64 12 Y64 C05 C13 C 0 1 N N N N N N 6.672 21.919 27.108 -5.194 3.574 0.126 C05 Y64 13 Y64 C06 C14 C 0 1 N N S N N N 7.474 21.045 26.127 -4.142 2.593 0.692 C06 Y64 14 Y64 C07 C15 C 0 1 N N N N N N 7.851 19.690 26.735 -4.708 1.172 0.744 C07 Y64 15 Y64 C08 C16 C 0 1 N N S N N N 8.890 19.806 27.914 -3.660 0.227 1.335 C08 Y64 16 Y64 C09 C17 C 0 1 N N S N N N 9.217 18.425 28.483 -4.268 -1.167 1.503 C09 Y64 17 Y64 C13 C18 C 0 1 N N S N N N 11.949 22.181 27.391 -0.108 -0.260 -0.006 C13 Y64 18 Y64 C22 C19 C 0 1 N N R N N N 8.151 26.234 26.326 5.806 -0.735 1.391 C22 Y64 19 Y64 C23 C20 C 0 1 N N N N N N 6.847 26.529 25.514 6.507 0.473 2.011 C23 Y64 20 Y64 C27 C21 C 0 1 N N N N N N 8.465 27.483 27.181 6.820 -1.557 0.588 C27 Y64 21 Y64 C28 C22 C 0 1 N N N N N N 9.238 29.134 25.446 6.190 -0.098 -1.288 C28 Y64 22 Y64 C29 C23 C 0 1 N N N N N N 8.941 28.902 24.176 5.667 1.055 -1.023 C29 Y64 23 Y64 C30 C24 C 0 1 N N N N N N 7.765 28.095 23.737 6.164 1.996 0.032 C30 Y64 24 Y64 N03 N1 N 0 1 N N N N N N 5.558 21.918 25.045 -3.407 3.241 -1.437 N03 Y64 25 Y64 N11 N2 N 0 1 N N N N N N 10.142 20.399 27.422 -2.507 0.152 0.435 N11 Y64 26 Y64 N18 N3 N 0 1 N N N N N N 11.787 23.605 27.061 1.083 -0.639 0.757 N18 Y64 27 Y64 O01 O1 O 0 1 N N N N N N 6.660 20.223 23.950 -1.868 2.280 -0.076 O01 Y64 28 Y64 O10 O2 O 0 1 N N N N N N 8.000 17.881 28.953 -5.460 -1.076 2.286 O10 Y64 29 Y64 O20 O3 O 0 1 N N N N N N 10.565 25.395 26.053 3.403 -0.651 1.008 O20 Y64 30 Y64 O31 O4 O 0 1 N N N N N N 10.201 23.242 25.459 2.424 0.315 -0.733 O31 Y64 31 Y64 O32 O5 O 0 1 N N N N N N 10.019 22.146 28.845 -1.156 -0.411 2.103 O32 Y64 32 Y64 H1 H1 H 0 1 N N N N N N 12.787 22.465 29.335 -1.312 -1.076 -1.595 H1 Y64 33 Y64 H2 H2 H 0 1 N N N N N N 13.163 20.881 28.574 -0.452 -2.295 -0.624 H2 Y64 34 Y64 H3 H3 H 0 1 N N N N N N 14.350 23.582 27.864 1.715 -1.454 -1.576 H3 Y64 35 Y64 H4 H4 H 0 1 N N N N N N 15.153 22.589 29.998 -0.382 -2.294 -3.628 H4 Y64 36 Y64 H5 H5 H 0 1 N N N N N N 15.592 21.086 29.118 1.381 -2.438 -3.827 H5 Y64 37 Y64 H6 H6 H 0 1 N N N N N N 16.433 22.628 28.738 0.545 -3.395 -2.581 H6 Y64 38 Y64 H7 H7 H 0 1 N N N N N N 15.871 22.331 26.403 -0.150 0.179 -3.357 H7 Y64 39 Y64 H8 H8 H 0 1 N N N N N N 14.967 20.818 26.749 0.943 0.840 -2.117 H8 Y64 40 Y64 H9 H9 H 0 1 N N N N N N 14.165 22.162 25.869 1.613 0.035 -3.556 H9 Y64 41 Y64 H10 H10 H 0 1 N N N N N N 9.566 26.592 24.729 4.729 0.831 0.377 H10 Y64 42 Y64 H11 H11 H 0 1 N N N N N N 8.990 24.895 24.848 4.819 -0.701 -0.523 H11 Y64 43 Y64 H12 H12 H 0 1 N N N N N N 5.728 27.988 24.416 7.749 2.107 1.442 H12 Y64 44 Y64 H13 H13 H 0 1 N N N N N N 6.779 29.993 25.422 8.598 1.108 -0.667 H13 Y64 45 Y64 H14 H14 H 0 1 N N N N N N 6.091 28.900 26.671 8.933 0.081 0.751 H14 Y64 46 Y64 H15 H15 H 0 1 N N N N N N 8.358 29.636 27.319 8.013 -1.238 -1.202 H15 Y64 47 Y64 H16 H16 H 0 1 N N N N N N 6.010 23.720 26.051 -5.425 2.864 -1.918 H16 Y64 48 Y64 H17 H17 H 0 1 N N N N N N 4.676 22.756 26.772 -4.989 4.593 -1.787 H17 Y64 49 Y64 H18 H18 H 0 1 N N N N N N 6.152 21.286 27.843 -5.083 4.564 0.569 H18 Y64 50 Y64 H19 H19 H 0 1 N N N N N N 7.343 22.615 27.633 -6.205 3.194 0.276 H19 Y64 51 Y64 H20 H20 H 0 1 N N N N N N 8.396 21.579 25.852 -3.817 2.909 1.683 H20 Y64 52 Y64 H21 H21 H 0 1 N N N N N N 6.937 19.213 27.120 -5.602 1.160 1.368 H21 Y64 53 Y64 H22 H22 H 0 1 N N N N N N 8.288 19.062 25.945 -4.964 0.846 -0.264 H22 Y64 54 Y64 H23 H23 H 0 1 N N N N N N 8.458 20.435 28.707 -3.339 0.603 2.307 H23 Y64 55 Y64 H24 H24 H 0 1 N N N N N N 9.868 18.594 29.354 -3.552 -1.817 2.005 H24 Y64 56 Y64 S1 S1 S 0 1 N Y N N N N 9.652 17.797 27.734 -4.667 -1.853 -0.128 S1 Y64 57 Y64 H26 H26 H 0 1 N N N N N N 12.195 21.626 26.473 0.054 0.710 -0.476 H26 Y64 58 Y64 H27 H27 H 0 1 N N N N N N 7.925 25.409 27.018 5.381 -1.354 2.181 H27 Y64 59 Y64 H28 H28 H 0 1 N N N N N N 5.995 26.413 26.201 7.260 0.125 2.719 H28 Y64 60 Y64 H29 H29 H 0 1 N N N N N N 6.778 25.778 24.714 5.773 1.080 2.541 H29 Y64 61 Y64 H30 H30 H 0 1 N N N N N N 7.830 27.434 28.078 6.329 -2.431 0.159 H30 Y64 62 Y64 H31 H31 H 0 1 N N N N N N 9.523 27.421 27.476 7.636 -1.873 1.237 H31 Y64 63 Y64 H32 H32 H 0 1 N N N N N N 10.213 29.523 25.699 5.761 -0.685 -2.086 H32 Y64 64 Y64 H33 H33 H 0 1 N N N N N N 9.585 29.320 23.417 4.811 1.363 -1.606 H33 Y64 65 Y64 H34 H34 H 0 1 N N N N N N 7.280 28.607 22.893 5.319 2.338 0.631 H34 Y64 66 Y64 H35 H35 H 0 1 N N N N N N 8.117 27.105 23.412 6.630 2.856 -0.448 H35 Y64 67 Y64 H36 H36 H 0 1 N N N N N N 4.833 22.052 24.370 -2.836 3.398 -2.206 H36 Y64 68 Y64 H37 H37 H 0 1 N N N N N N 10.650 19.947 26.688 -2.616 0.340 -0.510 H37 Y64 69 Y64 H38 H38 H 0 1 N N N N N N 12.377 24.283 27.500 0.991 -1.132 1.587 H38 Y64 70 Y64 H39 H39 H 0 1 N N N N N N 8.158 17.018 29.317 -6.143 -0.512 1.898 H39 Y64 71 Y64 O2 O6 O 0 1 N Y N N N N ? ? ? -5.658 -1.064 -0.772 O2 Y64 72 Y64 O1 O7 O 0 1 N Y N N N N ? ? ? -3.482 -2.240 -0.810 O1 Y64 73 Y64 O3 O8 O 0 1 N Y N N N N ? ? ? -5.372 -3.167 0.174 O3 Y64 74 Y64 H25 H25 H 0 1 N Y N N N N ? ? ? -5.649 -3.655 -0.613 H25 Y64 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y64 C30 C29 SING N N 1 Y64 C30 C24 SING N N 2 Y64 O01 C02 DOUB N N 3 Y64 C29 C28 DOUB N N 4 Y64 C24 C23 SING N N 5 Y64 C24 C25 SING N N 6 Y64 C02 N03 SING N N 7 Y64 C02 C06 SING N N 8 Y64 N03 C04 SING N N 9 Y64 C21 O20 SING N N 10 Y64 C21 C22 SING N N 11 Y64 C28 C26 SING N N 12 Y64 O31 C19 DOUB N N 13 Y64 C23 C22 SING N N 14 Y64 C25 C26 SING N N 15 Y64 O20 C19 SING N N 16 Y64 C06 C07 SING N N 17 Y64 C06 C05 SING N N 18 Y64 C19 N18 SING N N 19 Y64 C04 C05 SING N N 20 Y64 C22 C27 SING N N 21 Y64 C26 C27 SING N N 22 Y64 C17 C15 SING N N 23 Y64 C07 C08 SING N N 24 Y64 N18 C13 SING N N 25 Y64 C13 C12 SING N N 26 Y64 C13 C14 SING N N 27 Y64 N11 C08 SING N N 28 Y64 N11 C12 SING N N 29 Y64 C08 C09 SING N N 30 Y64 C15 C14 SING N N 31 Y64 C15 C16 SING N N 32 Y64 C12 O32 DOUB N N 33 Y64 C09 O10 SING N N 34 Y64 C14 H1 SING N N 35 Y64 C14 H2 SING N N 36 Y64 C15 H3 SING N N 37 Y64 C16 H4 SING N N 38 Y64 C16 H5 SING N N 39 Y64 C16 H6 SING N N 40 Y64 C17 H7 SING N N 41 Y64 C17 H8 SING N N 42 Y64 C17 H9 SING N N 43 Y64 C21 H10 SING N N 44 Y64 C21 H11 SING N N 45 Y64 C24 H12 SING N N 46 Y64 C25 H13 SING N N 47 Y64 C25 H14 SING N N 48 Y64 C26 H15 SING N N 49 Y64 C04 H16 SING N N 50 Y64 C04 H17 SING N N 51 Y64 C05 H18 SING N N 52 Y64 C05 H19 SING N N 53 Y64 C06 H20 SING N N 54 Y64 C07 H21 SING N N 55 Y64 C07 H22 SING N N 56 Y64 C08 H23 SING N N 57 Y64 C09 H24 SING N N 58 Y64 C09 S1 SING N N 59 Y64 C13 H26 SING N N 60 Y64 C22 H27 SING N N 61 Y64 C23 H28 SING N N 62 Y64 C23 H29 SING N N 63 Y64 C27 H30 SING N N 64 Y64 C27 H31 SING N N 65 Y64 C28 H32 SING N N 66 Y64 C29 H33 SING N N 67 Y64 C30 H34 SING N N 68 Y64 C30 H35 SING N N 69 Y64 N03 H36 SING N N 70 Y64 N11 H37 SING N N 71 Y64 N18 H38 SING N N 72 Y64 O10 H39 SING N N 73 Y64 S1 O2 DOUB N N 74 Y64 S1 O1 DOUB N N 75 Y64 S1 O3 SING N N 76 Y64 O3 H25 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y64 InChI InChI 1.03 "InChI=1S/C24H39N3O8S/c1-14(2)8-19(27-24(31)35-13-17-10-15-4-3-5-16(9-15)11-17)22(29)26-20(23(30)36(32,33)34)12-18-6-7-25-21(18)28/h3-4,14-20,23,30H,5-13H2,1-2H3,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t15-,16+,17-,18-,19-,20-,23-/m0/s1" Y64 InChIKey InChI 1.03 ZIWRGXZFSGDQST-LZHMTVEHSA-N Y64 SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@@H]1C[C@@H]2CC=C[C@H](C1)C2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S](O)(=O)=O" Y64 SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1C[CH]2CC=C[CH](C1)C2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O" Y64 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@@H]2C[C@@H]3CC=C[C@@H](C3)C2" Y64 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CC3CC=CC(C3)C2" # _pdbx_chem_comp_identifier.comp_id Y64 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[(2~{S})-2-[[(1~{R},3~{R},5~{S})-3-bicyclo[3.3.1]non-6-enyl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y64 "Create component" 2021-02-08 RCSB Y64 "Modify name" 2021-02-09 RCSB Y64 "Initial release" 2021-02-17 RCSB Y64 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id Y64 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C09 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #