data_Y6D # _chem_comp.id Y6D _chem_comp.name "2-(benzotriazol-1-yl)-~{N}-(4-pyridin-3-ylphenyl)-~{N}-(thiophen-3-ylmethyl)ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H19 N5 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-08 _chem_comp.pdbx_modified_date 2021-08-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 425.506 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y6D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LMH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y6D C10 C1 C 0 1 Y N N -19.601 -40.530 0.972 -5.105 -1.892 0.773 C10 Y6D 1 Y6D C14 C2 C 0 1 N N N -25.284 -40.212 4.645 -0.440 1.885 -1.516 C14 Y6D 2 Y6D C21 C3 C 0 1 Y N N -26.334 -41.975 2.288 1.200 -1.018 0.200 C21 Y6D 3 Y6D C22 C4 C 0 1 Y N N -27.159 -42.991 1.784 2.463 -1.542 0.380 C22 Y6D 4 Y6D C30 C5 C 0 1 Y N N -25.970 -44.610 3.172 3.406 0.340 -0.799 C30 Y6D 5 Y6D C31 C6 C 0 1 Y N N -25.179 -43.605 3.707 2.142 0.863 -0.971 C31 Y6D 6 Y6D O01 O1 O 0 1 N N N -22.657 -39.982 3.662 -1.135 -0.763 0.739 O01 Y6D 7 Y6D C02 C7 C 0 1 N N N -23.229 -40.978 3.293 -1.306 0.136 -0.057 C02 Y6D 8 Y6D C03 C8 C 0 1 N N N -22.589 -42.020 2.345 -2.701 0.612 -0.368 C03 Y6D 9 Y6D N04 N1 N 0 1 Y N N -21.281 -41.522 1.985 -3.674 -0.261 0.294 N04 Y6D 10 Y6D C05 C9 C 0 1 Y N N -20.986 -40.787 0.885 -4.242 -1.401 -0.222 C05 Y6D 11 Y6D C06 C10 C 0 1 Y N N -21.767 -40.277 -0.159 -4.123 -2.076 -1.432 C06 Y6D 12 Y6D C07 C11 C 0 1 Y N N -21.111 -39.548 -1.150 -4.852 -3.225 -1.646 C07 Y6D 13 Y6D C08 C12 C 0 1 Y N N -19.729 -39.243 -1.067 -5.704 -3.711 -0.663 C08 Y6D 14 Y6D C09 C13 C 0 1 Y N N -18.966 -39.738 0.019 -5.839 -3.060 0.529 C09 Y6D 15 Y6D N11 N2 N 0 1 Y N N -19.156 -41.108 2.126 -5.030 -1.056 1.828 N11 Y6D 16 Y6D N12 N3 N 0 1 Y N N -20.149 -41.705 2.695 -4.207 -0.098 1.582 N12 Y6D 17 Y6D N13 N4 N 0 1 N N N -24.586 -41.148 3.756 -0.247 0.710 -0.663 N13 Y6D 18 Y6D C15 C14 C 0 1 Y N N -25.161 -40.812 6.059 -0.384 3.133 -0.673 C15 Y6D 19 Y6D C16 C15 C 0 1 Y N N -24.429 -42.010 6.531 0.764 3.727 -0.345 C16 Y6D 20 Y6D S17 S1 S 0 1 Y N N -24.502 -42.255 8.193 0.435 5.146 0.640 S17 Y6D 21 Y6D C18 C16 C 0 1 Y N N -25.404 -40.927 8.453 -1.296 4.845 0.548 C18 Y6D 22 Y6D C19 C17 C 0 1 Y N N -25.726 -40.171 7.277 -1.521 3.753 -0.185 C19 Y6D 23 Y6D C20 C18 C 0 1 Y N N -25.367 -42.290 3.254 1.035 0.184 -0.477 C20 Y6D 24 Y6D C23 C19 C 0 1 Y N N -26.952 -44.289 2.221 3.574 -0.865 -0.119 C23 Y6D 25 Y6D C24 C20 C 0 1 Y N N -27.839 -45.432 1.650 4.934 -1.426 0.073 C24 Y6D 26 Y6D C25 C21 C 0 1 Y N N -28.287 -45.360 0.318 6.056 -0.753 -0.418 C25 Y6D 27 Y6D C26 C22 C 0 1 Y N N -29.063 -46.416 -0.172 7.303 -1.318 -0.213 C26 Y6D 28 Y6D C27 C23 C 0 1 Y N N -29.294 -47.481 0.661 7.397 -2.519 0.466 C27 Y6D 29 Y6D N28 N5 N 0 1 Y N N -28.849 -47.533 1.901 6.320 -3.132 0.918 N28 Y6D 30 Y6D C29 C24 C 0 1 Y N N -28.123 -46.549 2.410 5.114 -2.630 0.751 C29 Y6D 31 Y6D H1 H1 H 0 1 N N N -24.810 -39.220 4.606 0.347 1.920 -2.270 H1 Y6D 32 Y6D H2 H2 H 0 1 N N N -26.342 -40.124 4.356 -1.411 1.822 -2.008 H2 Y6D 33 Y6D H3 H3 H 0 1 N N N -26.442 -40.960 1.936 0.338 -1.545 0.583 H3 Y6D 34 Y6D H4 H4 H 0 1 N N N -27.938 -42.766 1.071 2.590 -2.476 0.907 H4 Y6D 35 Y6D H5 H5 H 0 1 N N N -25.832 -45.634 3.485 4.266 0.868 -1.183 H5 Y6D 36 Y6D H6 H6 H 0 1 N N N -24.434 -43.829 4.456 2.012 1.802 -1.490 H6 Y6D 37 Y6D H7 H7 H 0 1 N N N -23.208 -42.140 1.444 -2.826 1.633 -0.009 H7 Y6D 38 Y6D H8 H8 H 0 1 N N N -22.496 -42.989 2.857 -2.863 0.583 -1.446 H8 Y6D 39 Y6D H9 H9 H 0 1 N N N -22.834 -40.442 -0.195 -3.462 -1.702 -2.200 H9 Y6D 40 Y6D H10 H10 H 0 1 N N N -21.673 -39.205 -2.007 -4.758 -3.753 -2.583 H10 Y6D 41 Y6D H11 H11 H 0 1 N N N -19.260 -38.636 -1.828 -6.270 -4.613 -0.845 H11 Y6D 42 Y6D H12 H12 H 0 1 N N N -17.915 -39.506 0.106 -6.505 -3.448 1.285 H12 Y6D 43 Y6D H13 H13 H 0 1 N N N -23.894 -42.670 5.864 1.747 3.387 -0.639 H13 Y6D 44 Y6D H14 H14 H 0 1 N N N -25.736 -40.636 9.438 -2.059 5.453 1.011 H14 Y6D 45 Y6D H15 H15 H 0 1 N N N -26.302 -39.258 7.276 -2.516 3.379 -0.380 H15 Y6D 46 Y6D H16 H16 H 0 1 N N N -28.039 -44.515 -0.307 5.953 0.184 -0.945 H16 Y6D 47 Y6D H17 H17 H 0 1 N N N -29.467 -46.393 -1.173 8.192 -0.826 -0.578 H17 Y6D 48 Y6D H18 H18 H 0 1 N N N -29.867 -48.315 0.284 8.368 -2.963 0.628 H18 Y6D 49 Y6D H19 H19 H 0 1 N N N -27.752 -46.621 3.422 4.256 -3.158 1.140 H19 Y6D 50 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y6D C07 C08 DOUB Y N 1 Y6D C07 C06 SING Y N 2 Y6D C08 C09 SING Y N 3 Y6D C26 C25 DOUB Y N 4 Y6D C26 C27 SING Y N 5 Y6D C06 C05 DOUB Y N 6 Y6D C09 C10 DOUB Y N 7 Y6D C25 C24 SING Y N 8 Y6D C27 N28 DOUB Y N 9 Y6D C05 C10 SING Y N 10 Y6D C05 N04 SING Y N 11 Y6D C10 N11 SING Y N 12 Y6D C24 C23 SING N N 13 Y6D C24 C29 DOUB Y N 14 Y6D C22 C23 DOUB Y N 15 Y6D C22 C21 SING Y N 16 Y6D N28 C29 SING Y N 17 Y6D N04 C03 SING N N 18 Y6D N04 N12 SING Y N 19 Y6D N11 N12 DOUB Y N 20 Y6D C23 C30 SING Y N 21 Y6D C21 C20 DOUB Y N 22 Y6D C03 C02 SING N N 23 Y6D C30 C31 DOUB Y N 24 Y6D C20 C31 SING Y N 25 Y6D C20 N13 SING N N 26 Y6D C02 O01 DOUB N N 27 Y6D C02 N13 SING N N 28 Y6D N13 C14 SING N N 29 Y6D C14 C15 SING N N 30 Y6D C15 C16 DOUB Y N 31 Y6D C15 C19 SING Y N 32 Y6D C16 S17 SING Y N 33 Y6D C19 C18 DOUB Y N 34 Y6D S17 C18 SING Y N 35 Y6D C14 H1 SING N N 36 Y6D C14 H2 SING N N 37 Y6D C21 H3 SING N N 38 Y6D C22 H4 SING N N 39 Y6D C30 H5 SING N N 40 Y6D C31 H6 SING N N 41 Y6D C03 H7 SING N N 42 Y6D C03 H8 SING N N 43 Y6D C06 H9 SING N N 44 Y6D C07 H10 SING N N 45 Y6D C08 H11 SING N N 46 Y6D C09 H12 SING N N 47 Y6D C16 H13 SING N N 48 Y6D C18 H14 SING N N 49 Y6D C19 H15 SING N N 50 Y6D C25 H16 SING N N 51 Y6D C26 H17 SING N N 52 Y6D C27 H18 SING N N 53 Y6D C29 H19 SING N N 54 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y6D InChI InChI 1.03 "InChI=1S/C24H19N5OS/c30-24(16-29-23-6-2-1-5-22(23)26-27-29)28(15-18-11-13-31-17-18)21-9-7-19(8-10-21)20-4-3-12-25-14-20/h1-14,17H,15-16H2" Y6D InChIKey InChI 1.03 LHBIUOYHJIXRST-UHFFFAOYSA-N Y6D SMILES_CANONICAL CACTVS 3.385 "O=C(Cn1nnc2ccccc12)N(Cc3cscc3)c4ccc(cc4)c5cccnc5" Y6D SMILES CACTVS 3.385 "O=C(Cn1nnc2ccccc12)N(Cc3cscc3)c4ccc(cc4)c5cccnc5" Y6D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)nnn2CC(=O)N(Cc3ccsc3)c4ccc(cc4)c5cccnc5" Y6D SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)nnn2CC(=O)N(Cc3ccsc3)c4ccc(cc4)c5cccnc5" # _pdbx_chem_comp_identifier.comp_id Y6D _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-(benzotriazol-1-yl)-~{N}-(4-pyridin-3-ylphenyl)-~{N}-(thiophen-3-ylmethyl)ethanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y6D "Create component" 2021-02-08 RCSB Y6D "Initial release" 2021-08-11 RCSB ##