data_Y6R # _chem_comp.id Y6R _chem_comp.name "(2E)-1-[(3aR,8aS)-2-(1H-benzotriazole-5-carbonyl)octahydropyrrolo[3,4-d]azepin-6(1H)-yl]-3-[4-(trifluoromethoxy)phenyl]prop-2-en-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H24 F3 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-12 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 499.485 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y6R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G4P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y6R C02 C1 C 0 1 N N N N N N -12.203 9.015 49.237 -1.418 4.279 -0.025 C02 Y6R 1 Y6R C04 C2 C 0 1 N N N N N N -14.552 9.827 49.839 -0.180 2.669 -1.531 C04 Y6R 2 Y6R C05 C3 C 0 1 N N N N N N -13.887 10.535 51.011 -1.070 1.465 -1.555 C05 Y6R 3 Y6R C06 C4 C 0 1 N N S N N N -11.735 11.468 49.906 -3.173 2.954 -1.293 C06 Y6R 4 Y6R C07 C5 C 0 1 N N R N N N -13.037 11.732 50.518 -2.515 1.710 -1.847 C07 Y6R 5 Y6R N09 N1 N 0 1 N N N N N N -11.284 12.208 52.100 -4.547 1.109 -0.693 N09 Y6R 6 Y6R C10 C6 C 0 1 N N N N N N -10.747 11.331 51.078 -4.661 2.515 -1.149 C10 Y6R 7 Y6R C13 C7 C 0 1 N N N N N N -10.655 12.637 53.336 -5.320 0.486 0.218 C13 Y6R 8 Y6R C16 C8 C 0 1 Y N N N N N -8.919 10.945 54.175 -5.545 -1.512 1.692 C16 Y6R 9 Y6R C17 C9 C 0 1 Y N N N N N -7.630 10.695 54.662 -5.396 -2.845 1.931 C17 Y6R 10 Y6R C18 C10 C 0 1 Y N N N N N -8.381 13.294 54.009 -4.607 -1.772 -0.524 C18 Y6R 11 Y6R C19 C11 C 0 1 Y N N N N N -7.074 13.042 54.509 -4.441 -3.138 -0.281 C19 Y6R 12 Y6R C20 C12 C 0 1 Y N N N N N -6.700 11.773 54.832 -4.845 -3.673 0.956 C20 Y6R 13 Y6R C24 C13 C 0 1 N N N N N N -14.205 7.796 48.433 0.718 3.357 0.610 C24 Y6R 14 Y6R C26 C14 C 0 1 N N N N N N -13.290 6.808 47.748 1.821 2.418 0.406 C26 Y6R 15 Y6R C27 C15 C 0 1 N N N N N N -13.700 6.216 46.573 2.764 2.268 1.360 C27 Y6R 16 Y6R C28 C16 C 0 1 Y N N N N N -12.742 5.267 45.874 3.873 1.324 1.155 C28 Y6R 17 Y6R N01 N2 N 0 1 N N N N N N -13.628 8.947 49.190 -0.276 3.435 -0.296 N01 Y6R 18 Y6R C03 C17 C 0 1 N N N N N N -11.625 10.343 48.846 -2.680 3.437 0.033 C03 Y6R 19 Y6R C08 C18 C 0 1 N N N N N N -12.625 12.650 51.721 -3.412 0.530 -1.443 C08 Y6R 20 Y6R C14 C19 C 0 1 Y N N N N N -9.289 12.259 53.835 -5.153 -0.961 0.464 C14 Y6R 21 Y6R O15 O1 O 0 1 N N N N N N -11.320 13.373 54.015 -6.156 1.114 0.839 O15 Y6R 22 Y6R N21 N3 N 0 1 Y N N N N N -5.386 11.819 55.293 -4.572 -5.017 0.897 N21 Y6R 23 Y6R N22 N4 N 0 1 Y N N N N N -4.981 13.123 55.237 -4.012 -5.259 -0.366 N22 Y6R 24 Y6R N23 N5 N 0 1 Y N N N N N -6.015 13.892 54.756 -3.949 -4.156 -1.026 N23 Y6R 25 Y6R O25 O2 O 0 1 N N N N N N -15.443 7.626 48.362 0.699 4.068 1.598 O25 Y6R 26 Y6R C29 C20 C 0 1 Y N N N N N -11.715 5.797 45.067 4.852 1.167 2.142 C29 Y6R 27 Y6R C30 C21 C 0 1 Y N N N N N -10.836 4.926 44.421 5.888 0.282 1.946 C30 Y6R 28 Y6R C31 C22 C 0 1 Y N N N N N -10.993 3.538 44.585 5.962 -0.455 0.769 C31 Y6R 29 Y6R C32 C23 C 0 1 Y N N N N N -12.030 3.016 45.390 4.992 -0.302 -0.215 C32 Y6R 30 Y6R C33 C24 C 0 1 Y N N N N N -12.913 3.888 46.036 3.949 0.576 -0.025 C33 Y6R 31 Y6R O34 O3 O 0 1 N N N N N N -10.134 2.685 43.949 6.986 -1.326 0.580 O34 Y6R 32 Y6R C35 C25 C 0 1 N N N N N N -10.454 2.274 42.695 7.001 -2.051 -0.651 C35 Y6R 33 Y6R F36 F1 F 0 1 N N N N N N -9.458 1.560 42.212 7.071 -1.152 -1.721 F36 Y6R 34 Y6R F37 F2 F 0 1 N N N N N N -11.554 1.531 42.718 8.115 -2.897 -0.680 F37 Y6R 35 Y6R F38 F3 F 0 1 N N N N N N -10.661 3.342 41.938 5.834 -2.814 -0.758 F38 Y6R 36 Y6R H39 H1 H 0 1 N N N N N N -11.883 8.792 50.266 -1.276 4.784 0.931 H39 Y6R 37 Y6R H40 H2 H 0 1 N N N N N N -11.801 8.252 48.554 -1.515 5.021 -0.817 H40 Y6R 38 Y6R H44 H3 H 0 1 N N N N N N -14.904 10.578 49.116 0.852 2.343 -1.660 H44 Y6R 39 Y6R H43 H4 H 0 1 N N N N N N -15.408 9.243 50.208 -0.446 3.316 -2.366 H43 Y6R 40 Y6R H45 H5 H 0 1 N N N N N N -14.663 10.902 51.698 -0.686 0.775 -2.307 H45 Y6R 41 Y6R H46 H6 H 0 1 N N N N N N -13.236 9.824 51.540 -1.001 0.974 -0.584 H46 Y6R 42 Y6R H11 H7 H 0 1 N N N N N N -11.445 12.392 49.383 -3.099 3.763 -2.020 H11 Y6R 43 Y6R H12 H8 H 0 1 N N N N N N -13.651 12.330 49.828 -2.604 1.777 -2.932 H12 Y6R 44 Y6R H49 H9 H 0 1 N N N N N N -10.709 10.292 51.436 -5.173 3.123 -0.403 H49 Y6R 45 Y6R H50 H10 H 0 1 N N N N N N -9.739 11.653 50.778 -5.174 2.569 -2.109 H50 Y6R 46 Y6R H51 H11 H 0 1 N N N N N N -9.624 10.135 54.061 -5.973 -0.875 2.453 H51 Y6R 47 Y6R H52 H12 H 0 1 N N N N N N -7.335 9.686 54.911 -5.705 -3.260 2.879 H52 Y6R 48 Y6R H53 H13 H 0 1 N N N N N N -8.671 14.304 53.761 -4.301 -1.347 -1.469 H53 Y6R 49 Y6R H55 H14 H 0 1 N N N N N N -12.327 6.569 48.174 1.880 1.845 -0.507 H55 Y6R 50 Y6R H56 H15 H 0 1 N N N N N N -14.677 6.421 46.160 2.705 2.842 2.273 H56 Y6R 51 Y6R H41 H16 H 0 1 N N N N N N -10.558 10.194 48.623 -2.486 2.569 0.665 H41 Y6R 52 Y6R H42 H17 H 0 1 N N N N N N -12.146 10.683 47.939 -3.468 4.028 0.500 H42 Y6R 53 Y6R H48 H18 H 0 1 N N N N N N -12.610 13.706 51.413 -3.775 0.013 -2.332 H48 Y6R 54 Y6R H47 H19 H 0 1 N N N N N N -13.325 12.523 52.560 -2.858 -0.161 -0.808 H47 Y6R 55 Y6R H54 H20 H 0 1 N N N N N N -4.840 11.042 55.607 -4.734 -5.672 1.594 H54 Y6R 56 Y6R H57 H21 H 0 1 N N N N N N -11.609 6.865 44.950 4.796 1.739 3.056 H57 Y6R 57 Y6R H58 H22 H 0 1 N N N N N N -10.042 5.315 43.801 6.645 0.160 2.707 H58 Y6R 58 Y6R H59 H23 H 0 1 N N N N N N -12.141 1.948 45.506 5.055 -0.876 -1.127 H59 Y6R 59 Y6R H60 H24 H 0 1 N N N N N N -13.714 3.503 46.650 3.193 0.691 -0.788 H60 Y6R 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y6R N01 C02 SING N N 1 Y6R C02 C03 SING N N 2 Y6R N01 C04 SING N N 3 Y6R C04 C05 SING N N 4 Y6R C03 C06 SING N N 5 Y6R C05 C07 SING N N 6 Y6R C06 C07 SING N N 7 Y6R C07 C08 SING N N 8 Y6R C08 N09 SING N N 9 Y6R C06 C10 SING N N 10 Y6R N09 C10 SING N N 11 Y6R N09 C13 SING N N 12 Y6R C13 C14 SING N N 13 Y6R C13 O15 DOUB N N 14 Y6R C14 C16 DOUB Y N 15 Y6R C16 C17 SING Y N 16 Y6R C14 C18 SING Y N 17 Y6R C18 C19 DOUB Y N 18 Y6R C17 C20 DOUB Y N 19 Y6R C19 C20 SING Y N 20 Y6R C20 N21 SING Y N 21 Y6R N21 N22 SING Y N 22 Y6R C19 N23 SING Y N 23 Y6R N22 N23 DOUB Y N 24 Y6R N01 C24 SING N N 25 Y6R C24 O25 DOUB N N 26 Y6R C24 C26 SING N N 27 Y6R C26 C27 DOUB N E 28 Y6R C27 C28 SING N N 29 Y6R C28 C29 DOUB Y N 30 Y6R C29 C30 SING Y N 31 Y6R C30 C31 DOUB Y N 32 Y6R C31 C32 SING Y N 33 Y6R C28 C33 SING Y N 34 Y6R C32 C33 DOUB Y N 35 Y6R C31 O34 SING N N 36 Y6R O34 C35 SING N N 37 Y6R C35 F36 SING N N 38 Y6R C35 F37 SING N N 39 Y6R C35 F38 SING N N 40 Y6R C02 H39 SING N N 41 Y6R C02 H40 SING N N 42 Y6R C04 H44 SING N N 43 Y6R C04 H43 SING N N 44 Y6R C05 H45 SING N N 45 Y6R C05 H46 SING N N 46 Y6R C06 H11 SING N N 47 Y6R C07 H12 SING N N 48 Y6R C10 H49 SING N N 49 Y6R C10 H50 SING N N 50 Y6R C16 H51 SING N N 51 Y6R C17 H52 SING N N 52 Y6R C18 H53 SING N N 53 Y6R C26 H55 SING N N 54 Y6R C27 H56 SING N N 55 Y6R C03 H41 SING N N 56 Y6R C03 H42 SING N N 57 Y6R C08 H48 SING N N 58 Y6R C08 H47 SING N N 59 Y6R N21 H54 SING N N 60 Y6R C29 H57 SING N N 61 Y6R C30 H58 SING N N 62 Y6R C32 H59 SING N N 63 Y6R C33 H60 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y6R SMILES ACDLabs 12.01 "FC(F)(F)Oc1ccc(cc1)/C=C/C(=O)N1CCC2CN(CC2CC1)C(=O)c1cc2nn[NH]c2cc1" Y6R InChI InChI 1.06 "InChI=1S/C25H24F3N5O3/c26-25(27,28)36-20-5-1-16(2-6-20)3-8-23(34)32-11-9-18-14-33(15-19(18)10-12-32)24(35)17-4-7-21-22(13-17)30-31-29-21/h1-8,13,18-19H,9-12,14-15H2,(H,29,30,31)" Y6R InChIKey InChI 1.06 OTLINPKWWCLGCU-UHFFFAOYSA-N Y6R SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)Oc1ccc(/C=C/C(=O)N2CC[C@H]3CN(C[C@H]3CC2)C(=O)c4ccc5[nH]nnc5c4)cc1" Y6R SMILES CACTVS 3.385 "FC(F)(F)Oc1ccc(C=CC(=O)N2CC[CH]3CN(C[CH]3CC2)C(=O)c4ccc5[nH]nnc5c4)cc1" Y6R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1/C=C/C(=O)N2CC[C@@H]3CN(C[C@@H]3CC2)C(=O)c4ccc5c(c4)nn[nH]5)OC(F)(F)F" Y6R SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C=CC(=O)N2CCC3CN(CC3CC2)C(=O)c4ccc5c(c4)nn[nH]5)OC(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y6R "SYSTEMATIC NAME" ACDLabs 12.01 "(2E)-1-[(3aR,8aS)-2-(1H-benzotriazole-5-carbonyl)octahydropyrrolo[3,4-d]azepin-6(1H)-yl]-3-[4-(trifluoromethoxy)phenyl]prop-2-en-1-one" Y6R "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(~{E})-1-[(3~{a}~{S},8~{a}~{R})-2-(1~{H}-benzotriazol-5-ylcarbonyl)-1,3,3~{a},4,5,7,8,8~{a}-octahydropyrrolo[3,4-d]azepin-6-yl]-3-[4-(trifluoromethyloxy)phenyl]prop-2-en-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y6R "Create component" 2023-06-12 RCSB Y6R "Initial release" 2024-12-18 RCSB #