data_Y6U # _chem_comp.id Y6U _chem_comp.name "N-{4-[3-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)propyl]benzoyl}-L-glutamic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H23 N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-09 _chem_comp.pdbx_modified_date 2023-09-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 441.437 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y6U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FJY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y6U C2 C1 C 0 1 N N N -25.037 10.818 26.231 7.348 0.932 1.714 C2 Y6U 1 Y6U C9 C2 C 0 1 Y N N -26.518 11.845 27.663 6.387 1.465 -0.327 C9 Y6U 2 Y6U C12 C3 C 0 1 Y N N -25.603 11.928 33.644 -2.057 -1.367 0.083 C12 Y6U 3 Y6U C4 C4 C 0 1 N N N -24.599 12.990 26.842 5.876 -0.636 0.748 C4 Y6U 4 Y6U C5 C5 C 0 1 Y N N -27.609 12.101 28.510 6.028 2.138 -1.515 C5 Y6U 5 Y6U C6 C6 C 0 1 Y N N -27.447 13.405 28.951 5.174 1.348 -2.197 C6 Y6U 6 Y6U C23 C7 C 0 1 N N N -29.064 8.026 37.737 -6.164 3.412 0.015 C23 Y6U 7 Y6U C26 C8 C 0 1 N N N -27.242 7.084 34.158 -6.526 -1.522 0.334 C26 Y6U 8 Y6U C8 C9 C 0 1 Y N N -25.764 13.003 27.636 5.706 0.242 -0.338 C8 Y6U 9 Y6U C14 C10 C 0 1 Y N N -24.433 12.666 33.657 -1.066 -2.093 0.746 C14 Y6U 10 Y6U C13 C11 C 0 1 Y N N -26.662 12.322 32.860 -1.784 -0.806 -1.166 C13 Y6U 11 Y6U C15 C12 C 0 1 Y N N -26.540 13.466 32.087 -0.539 -0.972 -1.737 C15 Y6U 12 Y6U C16 C13 C 0 1 Y N N -24.314 13.820 32.893 0.176 -2.247 0.167 C16 Y6U 13 Y6U C17 C14 C 0 1 N N N -25.692 10.647 34.474 -3.391 -1.198 0.697 C17 Y6U 14 Y6U C20 C15 C 0 1 N N S -26.566 8.293 34.835 -5.667 -0.329 0.663 C20 Y6U 15 Y6U C21 C16 C 0 1 N N N -27.239 8.596 36.170 -6.324 0.939 0.115 C21 Y6U 16 Y6U C22 C17 C 0 1 N N N -28.632 7.974 36.276 -5.517 2.163 0.555 C22 Y6U 17 Y6U C29 C18 C 0 1 N N N -25.883 15.280 28.690 4.090 -0.903 -1.912 C29 Y6U 18 Y6U C30 C19 C 0 1 N N N -24.796 15.277 29.786 2.711 -0.723 -1.273 C30 Y6U 19 Y6U C31 C20 C 0 1 N N N -25.288 15.510 31.234 1.796 -1.871 -1.703 C31 Y6U 20 Y6U C32 C21 C 0 1 Y N N -25.372 14.225 32.092 0.438 -1.694 -1.074 C32 Y6U 21 Y6U N1 N1 N 0 1 N N N -26.135 10.772 26.958 7.195 1.768 0.715 N1 Y6U 22 Y6U N11 N2 N 0 1 N N N -24.656 9.656 25.485 8.177 1.277 2.753 N11 Y6U 23 Y6U N19 N3 N 0 1 N N N -26.525 9.523 34.030 -4.345 -0.496 0.054 N19 Y6U 24 Y6U N3 N4 N 0 1 N N N -24.277 11.896 26.163 6.702 -0.269 1.752 N3 Y6U 25 Y6U N7 N5 N 0 1 Y N N -26.351 13.919 28.426 4.966 0.197 -1.501 N7 Y6U 26 Y6U O10 O1 O 0 1 N N N -23.781 14.117 26.762 5.300 -1.711 0.776 O10 Y6U 27 Y6U O18 O2 O 0 1 N N N -25.040 10.562 35.449 -3.627 -1.692 1.782 O18 Y6U 28 Y6U O24 O3 O 0 1 N N N -30.012 7.301 38.133 -7.168 3.332 -0.653 O24 Y6U 29 Y6U O25 O4 O 0 1 N N N -28.456 8.794 38.533 -5.626 4.614 0.277 O25 Y6U 30 Y6U O27 O5 O 0 1 N N N -27.857 7.174 33.068 -6.080 -2.421 -0.340 O27 Y6U 31 Y6U O28 O6 O 0 1 N N N -27.168 5.959 34.707 -7.787 -1.587 0.790 O28 Y6U 32 Y6U H1 H1 H 0 1 N N N -28.409 11.422 28.765 6.376 3.113 -1.823 H1 Y6U 33 Y6U H2 H2 H 0 1 N N N -28.116 13.922 29.623 4.723 1.592 -3.148 H2 Y6U 34 Y6U H3 H3 H 0 1 N N N -23.603 12.342 34.268 -1.272 -2.533 1.710 H3 Y6U 35 Y6U H4 H4 H 0 1 N N N -27.577 11.748 32.847 -2.546 -0.243 -1.685 H4 Y6U 36 Y6U H5 H5 H 0 1 N N N -27.369 13.776 31.467 -0.328 -0.543 -2.705 H5 Y6U 37 Y6U H6 H6 H 0 1 N N N -23.403 14.399 32.922 0.944 -2.809 0.679 H6 Y6U 38 Y6U H7 H7 H 0 1 N N N -25.529 8.000 35.054 -5.560 -0.244 1.745 H7 Y6U 39 Y6U H8 H8 H 0 1 N N N -26.611 8.197 36.980 -6.349 0.894 -0.974 H8 Y6U 40 Y6U H9 H9 H 0 1 N N N -27.330 9.687 36.280 -7.341 1.017 0.500 H9 Y6U 41 Y6U H10 H10 H 0 1 N N N -29.342 8.542 35.657 -4.500 2.085 0.171 H10 Y6U 42 Y6U H11 H11 H 0 1 N N N -28.601 6.929 35.933 -5.491 2.209 1.644 H11 Y6U 43 Y6U H12 H12 H 0 1 N N N -25.463 15.704 27.766 4.519 -1.851 -1.588 H12 Y6U 44 Y6U H13 H13 H 0 1 N N N -26.731 15.896 29.024 3.990 -0.902 -2.998 H13 Y6U 45 Y6U H14 H14 H 0 1 N N N -24.291 14.300 29.756 2.811 -0.724 -0.188 H14 Y6U 46 Y6U H15 H15 H 0 1 N N N -24.074 16.071 29.545 2.282 0.225 -1.598 H15 Y6U 47 Y6U H16 H16 H 0 1 N N N -24.594 16.208 31.726 1.696 -1.870 -2.789 H16 Y6U 48 Y6U H17 H17 H 0 1 N N N -26.291 15.960 31.189 2.226 -2.819 -1.379 H17 Y6U 49 Y6U H18 H18 H 0 1 N N N -25.220 8.831 25.522 8.640 2.129 2.742 H18 Y6U 50 Y6U H19 H19 H 0 1 N N N -23.826 9.670 24.927 8.300 0.668 3.499 H19 Y6U 51 Y6U H20 H20 H 0 1 N N N -27.060 9.593 33.188 -4.156 -0.102 -0.812 H20 Y6U 52 Y6U H21 H21 H 0 1 N N N -23.453 11.888 25.596 6.837 -0.865 2.506 H21 Y6U 53 Y6U H22 H22 H 0 1 N N N -28.832 8.712 39.402 -6.077 5.386 -0.091 H22 Y6U 54 Y6U H23 H23 H 0 1 N N N -27.619 5.315 34.173 -8.300 -2.372 0.553 H23 Y6U 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y6U N11 C2 SING N N 1 Y6U N3 C2 SING N N 2 Y6U N3 C4 SING N N 3 Y6U C2 N1 DOUB N N 4 Y6U O10 C4 DOUB N N 5 Y6U C4 C8 SING N N 6 Y6U N1 C9 SING N N 7 Y6U C8 C9 DOUB Y N 8 Y6U C8 N7 SING Y N 9 Y6U C9 C5 SING Y N 10 Y6U N7 C29 SING N N 11 Y6U N7 C6 SING Y N 12 Y6U C5 C6 DOUB Y N 13 Y6U C29 C30 SING N N 14 Y6U C30 C31 SING N N 15 Y6U C31 C32 SING N N 16 Y6U C15 C32 DOUB Y N 17 Y6U C15 C13 SING Y N 18 Y6U C32 C16 SING Y N 19 Y6U C13 C12 DOUB Y N 20 Y6U C16 C14 DOUB Y N 21 Y6U O27 C26 DOUB N N 22 Y6U C12 C14 SING Y N 23 Y6U C12 C17 SING N N 24 Y6U N19 C17 SING N N 25 Y6U N19 C20 SING N N 26 Y6U C26 O28 SING N N 27 Y6U C26 C20 SING N N 28 Y6U C17 O18 DOUB N N 29 Y6U C20 C21 SING N N 30 Y6U C21 C22 SING N N 31 Y6U C22 C23 SING N N 32 Y6U C23 O24 DOUB N N 33 Y6U C23 O25 SING N N 34 Y6U C5 H1 SING N N 35 Y6U C6 H2 SING N N 36 Y6U C14 H3 SING N N 37 Y6U C13 H4 SING N N 38 Y6U C15 H5 SING N N 39 Y6U C16 H6 SING N N 40 Y6U C20 H7 SING N N 41 Y6U C21 H8 SING N N 42 Y6U C21 H9 SING N N 43 Y6U C22 H10 SING N N 44 Y6U C22 H11 SING N N 45 Y6U C29 H12 SING N N 46 Y6U C29 H13 SING N N 47 Y6U C30 H14 SING N N 48 Y6U C30 H15 SING N N 49 Y6U C31 H16 SING N N 50 Y6U C31 H17 SING N N 51 Y6U N11 H18 SING N N 52 Y6U N11 H19 SING N N 53 Y6U N19 H20 SING N N 54 Y6U N3 H21 SING N N 55 Y6U O25 H22 SING N N 56 Y6U O28 H23 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y6U SMILES ACDLabs 12.01 "O=C(O)C(CCC(=O)O)NC(=O)c1ccc(cc1)CCCn1ccc2N=C(N)NC(=O)c21" Y6U InChI InChI 1.06 "InChI=1S/C21H23N5O6/c22-21-24-14-9-11-26(17(14)19(30)25-21)10-1-2-12-3-5-13(6-4-12)18(29)23-15(20(31)32)7-8-16(27)28/h3-6,9,11,15H,1-2,7-8,10H2,(H,23,29)(H,27,28)(H,31,32)(H3,22,24,25,30)/t15-/m0/s1" Y6U InChIKey InChI 1.06 IBENGLXKAUDADJ-HNNXBMFYSA-N Y6U SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2ccn(CCCc3ccc(cc3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)c2C(=O)N1" Y6U SMILES CACTVS 3.385 "NC1=Nc2ccn(CCCc3ccc(cc3)C(=O)N[CH](CCC(O)=O)C(O)=O)c2C(=O)N1" Y6U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CCCn2ccc3c2C(=O)NC(=N3)N)C(=O)N[C@@H](CCC(=O)O)C(=O)O" Y6U SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CCCn2ccc3c2C(=O)NC(=N3)N)C(=O)NC(CCC(=O)O)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y6U "SYSTEMATIC NAME" ACDLabs 12.01 "N-{4-[3-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)propyl]benzoyl}-L-glutamic acid" Y6U "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[4-[3-(2-azanyl-4-oxidanylidene-3~{H}-pyrrolo[3,2-d]pyrimidin-5-yl)propyl]phenyl]carbonylamino]pentanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y6U "Create component" 2023-01-09 RCSB Y6U "Initial release" 2023-09-06 RCSB #