data_Y70 # _chem_comp.id Y70 _chem_comp.name S-Pomalidomide _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H11 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-12-05 _chem_comp.pdbx_modified_date 2014-09-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 273.244 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y70 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4CI3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y70 C1 C1 C 0 1 Y N N -1.697 0.575 -11.315 -3.972 -1.197 -0.123 C1 Y70 1 Y70 C2 C2 C 0 1 Y N N -1.928 -0.638 -10.644 -4.407 0.098 0.054 C2 Y70 2 Y70 C3 C3 C 0 1 Y N N -3.149 -0.897 -10.015 -3.497 1.140 0.175 C3 Y70 3 Y70 C4 C4 C 0 1 Y N N -4.102 0.117 -10.068 -2.139 0.880 0.119 C4 Y70 4 Y70 C5 C5 C 0 1 Y N N -3.853 1.331 -10.711 -1.683 -0.443 -0.062 C5 Y70 5 Y70 C6 C6 C 0 1 Y N N -2.662 1.598 -11.366 -2.606 -1.481 -0.183 C6 Y70 6 Y70 C7 C7 C 0 1 N N N -5.496 0.211 -9.501 -0.924 1.716 0.208 C7 Y70 7 Y70 N8 N8 N 0 1 N N N -6.001 1.463 -9.828 0.153 0.919 0.085 N8 Y70 8 Y70 C9 C9 C 0 1 N N N -5.084 2.169 -10.557 -0.213 -0.366 -0.077 C9 Y70 9 Y70 N10 N10 N 0 1 N N N -2.485 2.787 -12.012 -2.170 -2.786 -0.360 N10 Y70 10 Y70 O11 O11 O 0 1 N N N -5.171 3.289 -11.051 0.545 -1.306 -0.212 O11 Y70 11 Y70 C12 C12 C 0 1 N N S -7.336 1.965 -9.514 1.540 1.387 0.123 C12 Y70 12 Y70 O13 O13 O 0 1 N N N -5.993 -0.744 -8.881 -0.900 2.921 0.364 O13 Y70 13 Y70 C14 C14 C 0 1 N N N -7.245 3.059 -8.420 2.171 1.014 1.468 C14 Y70 14 Y70 C15 C15 C 0 1 N N N -8.016 2.508 -10.758 2.322 0.735 -0.987 C15 Y70 15 Y70 N16 N16 N 0 1 N N N -8.913 3.523 -10.632 2.970 -0.424 -0.795 N16 Y70 16 Y70 C17 C17 C 0 1 N N N -9.277 4.117 -9.465 2.973 -1.063 0.384 C17 Y70 17 Y70 C18 C18 C 0 1 N N N -8.658 3.639 -8.167 2.229 -0.514 1.573 C18 Y70 18 Y70 O19 O19 O 0 1 N N N -7.766 1.995 -11.845 2.366 1.268 -2.075 O19 Y70 19 Y70 O20 O20 O 0 1 N N N -10.120 5.000 -9.428 3.586 -2.102 0.495 O20 Y70 20 Y70 H1 H1 H 0 1 N N N -0.748 0.727 -11.808 -4.691 -1.998 -0.211 H1 Y70 21 Y70 H2 H2 H 0 1 N N N -1.148 -1.384 -10.614 -5.466 0.305 0.099 H2 Y70 22 Y70 H3 H3 H 0 1 N N N -3.343 -1.834 -9.514 -3.849 2.151 0.313 H3 Y70 23 Y70 H101 H101 H 0 0 N N N -3.306 3.349 -11.908 -2.815 -3.506 -0.443 H101 Y70 24 Y70 H102 H102 H 0 0 N N N -1.701 3.267 -11.618 -1.220 -2.979 -0.401 H102 Y70 25 Y70 H12 H12 H 0 1 N N N -7.947 1.140 -9.118 1.563 2.470 -0.002 H12 Y70 26 Y70 H141 H141 H 0 0 N N N -6.855 2.619 -7.490 3.179 1.423 1.526 H141 Y70 27 Y70 H142 H142 H 0 0 N N N -6.572 3.861 -8.756 1.564 1.413 2.281 H142 Y70 28 Y70 H181 H181 H 0 0 N N N -9.296 2.858 -7.728 2.747 -0.797 2.489 H181 Y70 29 Y70 H182 H182 H 0 0 N N N -8.582 4.486 -7.469 1.217 -0.917 1.587 H182 Y70 30 Y70 H16 H16 H 0 1 N N N -9.341 3.861 -11.470 3.454 -0.815 -1.539 H16 Y70 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y70 C1 C2 SING Y N 1 Y70 C1 C6 DOUB Y N 2 Y70 C2 C3 DOUB Y N 3 Y70 C3 C4 SING Y N 4 Y70 C4 C5 DOUB Y N 5 Y70 C4 C7 SING N N 6 Y70 C5 C6 SING Y N 7 Y70 C5 C9 SING N N 8 Y70 C6 N10 SING N N 9 Y70 C7 N8 SING N N 10 Y70 C7 O13 DOUB N N 11 Y70 N8 C9 SING N N 12 Y70 N8 C12 SING N N 13 Y70 C9 O11 DOUB N N 14 Y70 C12 C14 SING N N 15 Y70 C12 C15 SING N N 16 Y70 C14 C18 SING N N 17 Y70 C15 N16 SING N N 18 Y70 C15 O19 DOUB N N 19 Y70 N16 C17 SING N N 20 Y70 C17 C18 SING N N 21 Y70 C17 O20 DOUB N N 22 Y70 C1 H1 SING N N 23 Y70 C2 H2 SING N N 24 Y70 C3 H3 SING N N 25 Y70 N10 H101 SING N N 26 Y70 N10 H102 SING N N 27 Y70 C12 H12 SING N N 28 Y70 C14 H141 SING N N 29 Y70 C14 H142 SING N N 30 Y70 C18 H181 SING N N 31 Y70 C18 H182 SING N N 32 Y70 N16 H16 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y70 SMILES ACDLabs 12.01 "O=C1NC(=O)CCC1N3C(=O)c2cccc(c2C3=O)N" Y70 InChI InChI 1.03 "InChI=1S/C13H11N3O4/c14-7-3-1-2-6-10(7)13(20)16(12(6)19)8-4-5-9(17)15-11(8)18/h1-3,8H,4-5,14H2,(H,15,17,18)/t8-/m0/s1" Y70 InChIKey InChI 1.03 UVSMNLNDYGZFPF-QMMMGPOBSA-N Y70 SMILES_CANONICAL CACTVS 3.385 "Nc1cccc2C(=O)N([C@H]3CCC(=O)NC3=O)C(=O)c12" Y70 SMILES CACTVS 3.385 "Nc1cccc2C(=O)N([CH]3CCC(=O)NC3=O)C(=O)c12" Y70 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1cc2c(c(c1)N)C(=O)N(C2=O)[C@H]3CCC(=O)NC3=O" Y70 SMILES "OpenEye OEToolkits" 1.9.2 "c1cc2c(c(c1)N)C(=O)N(C2=O)C3CCC(=O)NC3=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y70 "SYSTEMATIC NAME" ACDLabs 12.01 "4-amino-2-[(3S)-2,6-dioxopiperidin-3-yl]-1H-isoindole-1,3(2H)-dione" Y70 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "4-azanyl-2-[(3S)-2,6-bis(oxidanylidene)piperidin-3-yl]isoindole-1,3-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y70 "Create component" 2013-12-05 EBI Y70 "Initial release" 2014-07-16 RCSB Y70 "Modify descriptor" 2014-09-05 RCSB #