data_Y71 # _chem_comp.id Y71 _chem_comp.name "(1S,2S)-2-((S)-2-(((((1S,2S,4S)-bicyclo[2.2.1]hept-5-en-2-yl)methoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H35 N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 501.594 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y71 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LKX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y71 C1 C1 C 0 1 N N N N N N 10.610 23.947 26.309 -2.760 -0.433 -0.060 C1 Y71 1 Y71 C10 C2 C 0 1 N N S N N N 7.193 21.006 26.252 4.095 -2.086 -0.312 C10 Y71 2 Y71 C11 C3 C 0 1 N N N N N N 6.232 20.878 25.087 5.258 -2.628 -1.113 C11 Y71 3 Y71 C12 C4 C 0 1 N N N N N N 5.444 22.640 26.391 4.593 -4.352 0.295 C12 Y71 4 Y71 C13 C5 C 0 1 N N N N N N 6.413 21.847 27.253 3.962 -3.067 0.876 C13 Y71 5 Y71 C14 C6 C 0 1 N N S N N N 8.959 18.462 28.597 3.577 1.204 1.618 C14 Y71 6 Y71 C15 C7 C 0 1 N N N N N N 9.042 25.733 26.314 -5.084 -0.975 -0.034 C15 Y71 7 Y71 C16 C8 C 0 1 N N S N N N 8.871 26.398 24.966 -6.254 -1.043 0.950 C16 Y71 8 Y71 C17 C9 C 0 1 N N S N N N 10.028 27.374 24.581 -7.539 -1.574 0.238 C17 Y71 9 Y71 C18 C10 C 0 1 N N N N N N 9.336 28.179 23.479 -8.652 -0.943 1.152 C18 Y71 10 Y71 C19 C11 C 0 1 N N N N N N 10.107 28.408 25.662 -7.678 -0.678 -0.999 C19 Y71 11 Y71 C2 C12 C 0 1 N N S N N N 11.663 22.132 27.511 -0.387 0.083 -0.261 C2 Y71 12 Y71 C20 C13 C 0 1 N N N N N N 9.044 29.184 25.550 -8.019 0.532 -0.600 C20 Y71 13 Y71 C21 C14 C 0 1 N N S N N N 8.219 28.662 24.413 -8.132 0.524 0.929 C21 Y71 14 Y71 C22 C15 C 0 1 N N N N N N 7.631 27.305 24.886 -6.653 0.377 1.421 C22 Y71 15 Y71 C3 C16 C 0 1 N N N N N N 12.801 21.899 28.502 -0.345 1.459 -0.929 C3 Y71 16 Y71 C4 C17 C 0 1 N N N N N N 14.185 22.328 28.015 -1.490 1.571 -1.937 C4 Y71 17 Y71 C5 C18 C 0 1 N N N N N N 15.239 22.083 29.089 -1.525 2.988 -2.514 C5 Y71 18 Y71 C6 C19 C 0 1 N N N N N N 14.561 21.613 26.728 -1.273 0.566 -3.069 C6 Y71 19 Y71 C7 C20 C 0 1 N N N N N N 10.345 21.591 28.068 0.810 -0.075 0.641 C7 Y71 20 Y71 C8 C21 C 0 1 N N S N N N 8.652 19.806 27.960 3.218 -0.152 1.005 C8 Y71 21 Y71 C9 C22 C 0 1 N N N N N N 7.685 19.667 26.786 4.404 -0.674 0.192 C9 Y71 22 Y71 N1 N1 N 0 1 N N N N N N 11.560 23.540 27.166 -1.614 -0.039 0.530 N1 Y71 23 Y71 N2 N2 N 0 1 N N N N N N 9.890 20.456 27.532 2.055 0.001 0.128 N2 Y71 24 Y71 N3 N3 N 0 1 N N N N N N 5.262 21.767 25.238 5.519 -3.896 -0.749 N3 Y71 25 Y71 O1 O1 O 0 1 N N N N N N 9.965 23.205 25.607 -2.774 -0.693 -1.247 O1 Y71 26 Y71 O2 O2 O 0 1 N N N N N N 6.349 20.091 24.135 5.867 -2.010 -1.960 O2 Y71 27 Y71 O3 O3 O 0 1 N N N N N N 7.789 17.877 29.160 4.780 1.079 2.380 O3 Y71 28 Y71 O4 O4 O 0 1 N N N N N N 9.742 22.205 28.946 0.654 -0.269 1.828 O4 Y71 29 Y71 O5 O5 O 0 1 N N N N N N 10.409 25.267 26.436 -3.887 -0.545 0.668 O5 Y71 30 Y71 H1 H1 H 0 1 N N N N N N 8.066 21.587 25.919 3.184 -2.085 -0.910 H1 Y71 31 Y71 H2 H2 H 0 1 N N N N N N 5.876 23.607 26.094 5.137 -4.889 1.072 H2 Y71 32 Y71 H3 H3 H 0 1 N N N N N N 4.492 22.810 26.916 3.822 -4.990 -0.135 H3 Y71 33 Y71 H4 H4 H 0 1 N N N N N N 5.870 21.206 27.963 4.524 -2.712 1.740 H4 Y71 34 Y71 H5 H5 H 0 1 N N N N N N 7.085 22.520 27.806 2.915 -3.228 1.133 H5 Y71 35 Y71 H6 H6 H 0 1 N N N N N N 9.674 18.649 29.412 2.767 1.534 2.268 H6 Y71 36 Y71 S1 S1 S 0 1 N Y N N N N 9.322 17.808 27.832 3.824 2.419 0.294 S1 Y71 37 Y71 H8 H8 H 0 1 N N N N N N 8.826 26.457 27.113 -4.916 -1.961 -0.468 H8 Y71 38 Y71 H9 H9 H 0 1 N N N N N N 8.352 24.880 26.395 -5.316 -0.264 -0.826 H9 Y71 39 Y71 H10 H10 H 0 1 N N N N N N 8.794 25.623 24.189 -6.001 -1.673 1.802 H10 Y71 40 Y71 H11 H11 H 0 1 N N N N N N 10.974 26.890 24.298 -7.585 -2.649 0.063 H11 Y71 41 Y71 H12 H12 H 0 1 N N N N N N 8.971 27.557 22.648 -9.655 -1.095 0.753 H12 Y71 42 Y71 H13 H13 H 0 1 N N N N N N 9.956 28.996 23.081 -8.570 -1.261 2.191 H13 Y71 43 Y71 H14 H14 H 0 1 N N N N N N 10.891 28.502 26.399 -7.522 -0.985 -2.022 H14 Y71 44 Y71 H16 H16 H 0 1 N N N N N N 11.896 21.564 26.598 -0.370 -0.693 -1.026 H16 Y71 45 Y71 H17 H17 H 0 1 N N N N N N 8.811 30.040 26.166 -8.191 1.383 -1.242 H17 Y71 46 Y71 H19 H19 H 0 1 N N N N N N 7.495 29.363 23.971 -8.714 1.324 1.386 H19 Y71 47 Y71 H20 H20 H 0 1 N N N N N N 7.150 27.404 25.870 -6.601 0.452 2.507 H20 Y71 48 Y71 H21 H21 H 0 1 N N N N N N 6.903 26.915 24.160 -6.016 1.128 0.952 H21 Y71 49 Y71 H22 H22 H 0 1 N N N N N N 12.574 22.461 29.420 -0.452 2.234 -0.170 H22 Y71 50 Y71 H23 H23 H 0 1 N N N N N N 12.839 20.824 28.730 0.607 1.584 -1.444 H23 Y71 51 Y71 H24 H24 H 0 1 N N N N N N 14.153 23.408 27.809 -2.436 1.359 -1.439 H24 Y71 52 Y71 H25 H25 H 0 1 N N N N N N 14.951 22.607 30.012 -0.579 3.201 -3.012 H25 Y71 53 Y71 H26 H26 H 0 1 N N N N N N 15.315 21.004 29.289 -2.340 3.069 -3.232 H26 Y71 54 Y71 H27 H27 H 0 1 N N N N N N 16.212 22.461 28.741 -1.679 3.705 -1.707 H27 Y71 55 Y71 H28 H28 H 0 1 N N N N N N 15.559 21.942 26.403 -0.327 0.778 -3.568 H28 Y71 56 Y71 H29 H29 H 0 1 N N N N N N 14.571 20.527 26.902 -1.248 -0.444 -2.659 H29 Y71 57 Y71 H30 H30 H 0 1 N N N N N N 13.824 21.853 25.947 -2.089 0.646 -3.788 H30 Y71 58 Y71 H31 H31 H 0 1 N N N N N N 8.169 20.438 28.720 2.983 -0.859 1.801 H31 Y71 59 Y71 H32 H32 H 0 1 N N N N N N 6.815 19.082 27.117 5.293 -0.700 0.822 H32 Y71 60 Y71 H33 H33 H 0 1 N N N N N N 8.198 19.133 25.972 4.580 -0.015 -0.658 H33 Y71 61 Y71 H34 H34 H 0 1 N N N N N N 12.194 24.203 27.565 -1.601 0.164 1.479 H34 Y71 62 Y71 H35 H35 H 0 1 N N N N N N 10.423 20.029 26.801 2.180 0.157 -0.821 H35 Y71 63 Y71 H36 H36 H 0 1 N N N N N N 4.479 21.833 24.620 6.227 -4.439 -1.128 H36 Y71 64 Y71 H37 H37 H 0 1 N N N N N N 8.010 17.040 29.550 5.544 0.787 1.864 H37 Y71 65 Y71 O8 O8 O 0 1 N Y N N N N ? ? ? 4.295 3.674 1.014 O8 Y71 66 Y71 O6 O6 O 0 1 N Y N N N N ? ? ? 4.926 2.049 -0.524 O6 Y71 67 Y71 O7 O7 O 0 1 N Y N N N N ? ? ? 2.578 2.791 -0.280 O7 Y71 68 Y71 H7 H7 H 0 1 N Y N N N N ? ? ? 4.470 4.422 0.426 H7 Y71 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y71 C18 C21 SING N N 1 Y71 C18 C17 SING N N 2 Y71 O2 C11 DOUB N N 3 Y71 C21 C22 SING N N 4 Y71 C21 C20 SING N N 5 Y71 C17 C16 SING N N 6 Y71 C17 C19 SING N N 7 Y71 C22 C16 SING N N 8 Y71 C16 C15 SING N N 9 Y71 C11 N3 SING N N 10 Y71 C11 C10 SING N N 11 Y71 N3 C12 SING N N 12 Y71 C20 C19 DOUB N N 13 Y71 O1 C1 DOUB N N 14 Y71 C10 C9 SING N N 15 Y71 C10 C13 SING N N 16 Y71 C1 O5 SING N N 17 Y71 C1 N1 SING N N 18 Y71 C15 O5 SING N N 19 Y71 C12 C13 SING N N 20 Y71 C6 C4 SING N N 21 Y71 C9 C8 SING N N 22 Y71 N1 C2 SING N N 23 Y71 C2 C7 SING N N 24 Y71 C2 C3 SING N N 25 Y71 N2 C8 SING N N 26 Y71 N2 C7 SING N N 27 Y71 C8 C14 SING N N 28 Y71 C4 C3 SING N N 29 Y71 C4 C5 SING N N 30 Y71 C7 O4 DOUB N N 31 Y71 C14 O3 SING N N 32 Y71 C10 H1 SING N N 33 Y71 C12 H2 SING N N 34 Y71 C12 H3 SING N N 35 Y71 C13 H4 SING N N 36 Y71 C13 H5 SING N N 37 Y71 C14 H6 SING N N 38 Y71 C14 S1 SING N N 39 Y71 C15 H8 SING N N 40 Y71 C15 H9 SING N N 41 Y71 C16 H10 SING N N 42 Y71 C17 H11 SING N N 43 Y71 C18 H12 SING N N 44 Y71 C18 H13 SING N N 45 Y71 C19 H14 SING N N 46 Y71 C2 H16 SING N N 47 Y71 C20 H17 SING N N 48 Y71 C21 H19 SING N N 49 Y71 C22 H20 SING N N 50 Y71 C22 H21 SING N N 51 Y71 C3 H22 SING N N 52 Y71 C3 H23 SING N N 53 Y71 C4 H24 SING N N 54 Y71 C5 H25 SING N N 55 Y71 C5 H26 SING N N 56 Y71 C5 H27 SING N N 57 Y71 C6 H28 SING N N 58 Y71 C6 H29 SING N N 59 Y71 C6 H30 SING N N 60 Y71 C8 H31 SING N N 61 Y71 C9 H32 SING N N 62 Y71 C9 H33 SING N N 63 Y71 N1 H34 SING N N 64 Y71 N2 H35 SING N N 65 Y71 N3 H36 SING N N 66 Y71 O3 H37 SING N N 67 Y71 S1 O8 SING N N 68 Y71 S1 O6 DOUB N N 69 Y71 S1 O7 DOUB N N 70 Y71 O8 H7 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y71 InChI InChI 1.03 "InChI=1S/C22H35N3O8S/c1-12(2)7-17(25-22(29)33-11-16-9-13-3-4-14(16)8-13)20(27)24-18(21(28)34(30,31)32)10-15-5-6-23-19(15)26/h3-4,12-18,21,28H,5-11H2,1-2H3,(H,23,26)(H,24,27)(H,25,29)(H,30,31,32)/t13-,14+,15-,16+,17-,18-,21-/m0/s1" Y71 InChIKey InChI 1.03 WZJYVJHLXCYWFV-JBKSVKCVSA-N Y71 SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@H]1C[C@@H]2C[C@H]1C=C2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S](O)(=O)=O" Y71 SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1C[CH]2C[CH]1C=C2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O" Y71 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@H]2C[C@@H]3C[C@H]2C=C3" Y71 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CC3CC2C=C3" # _pdbx_chem_comp_identifier.comp_id Y71 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[(2~{S})-2-[[(1~{S},2~{S},4~{S})-2-bicyclo[2.2.1]hept-5-enyl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y71 "Create component" 2021-02-08 RCSB Y71 "Modify name" 2021-02-09 RCSB Y71 "Initial release" 2021-02-17 RCSB Y71 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id Y71 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C14 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #