data_Y79 # _chem_comp.id Y79 _chem_comp.name "N-{4-[4-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-2-fluorobenzoyl}-L-glutamic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H24 F N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-09 _chem_comp.pdbx_modified_date 2023-09-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 473.454 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y79 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FJU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y79 C8 C1 C 0 1 Y N N -2.964 69.983 -1.761 -6.800 0.331 0.505 C8 Y79 1 Y79 C5 C2 C 0 1 Y N N -1.283 68.977 -0.669 -7.583 2.294 1.289 C5 Y79 2 Y79 C6 C3 C 0 1 Y N N -2.414 68.166 -0.666 -6.281 2.186 1.622 C6 Y79 3 Y79 N1 N1 N 0 1 N N N -1.007 71.297 -1.728 -9.093 0.702 0.013 N1 Y79 4 Y79 C2 C4 C 0 1 N N N -1.625 72.245 -2.418 -9.148 -0.451 -0.612 C2 Y79 5 Y79 C4 C5 C 0 1 N N N -3.590 71.028 -2.502 -6.879 -0.904 -0.165 C4 Y79 6 Y79 C9 C6 C 0 1 Y N N -1.653 70.153 -1.385 -7.947 1.131 0.577 C9 Y79 7 Y79 C12 C7 C 0 1 Y N N -4.956 66.334 -8.740 2.678 -0.617 -0.507 C12 Y79 8 Y79 C13 C8 C 0 1 Y N N -3.927 66.920 -8.023 1.717 -1.443 -1.099 C13 Y79 9 Y79 C14 C9 C 0 1 Y N N -5.882 65.540 -8.077 2.320 0.661 -0.074 C14 Y79 10 Y79 C15 C10 C 0 1 Y N N -3.794 66.704 -6.663 0.420 -0.987 -1.250 C15 Y79 11 Y79 C16 C11 C 0 1 Y N N -5.750 65.320 -6.708 1.023 1.101 -0.233 C16 Y79 12 Y79 C17 C12 C 0 1 N N N -5.005 66.663 -10.242 4.065 -1.097 -0.335 C17 Y79 13 Y79 C20 C13 C 0 1 N N S -6.012 64.456 -11.284 6.362 -0.776 0.411 C20 Y79 14 Y79 C21 C14 C 0 1 N N N -6.209 64.017 -12.736 7.312 0.421 0.480 C21 Y79 15 Y79 C22 C15 C 0 1 N N N -5.765 65.115 -13.706 7.302 1.158 -0.860 C22 Y79 16 Y79 C23 C16 C 0 1 N N N -5.649 64.660 -15.158 8.237 2.338 -0.792 C23 Y79 17 Y79 C26 C17 C 0 1 N N N -5.045 63.498 -10.598 6.464 -1.572 1.687 C26 Y79 18 Y79 C29 C18 C 0 1 N N N -4.731 68.222 -1.511 -4.413 0.530 1.320 C29 Y79 19 Y79 C30 C19 C 0 1 N N N -4.655 66.871 -2.229 -3.595 0.898 0.081 C30 Y79 20 Y79 C31 C20 C 0 1 N N N -4.513 67.021 -3.746 -2.158 0.401 0.252 C31 Y79 21 Y79 C32 C21 C 0 1 N N N -4.541 65.684 -4.497 -1.340 0.770 -0.987 C32 Y79 22 Y79 C33 C22 C 0 1 Y N N -4.707 65.903 -6.002 0.075 0.280 -0.819 C33 Y79 23 Y79 F34 F1 F 0 1 N N N -3.025 67.708 -8.676 2.055 -2.681 -1.521 F34 Y79 24 Y79 N11 N2 N 0 1 N N N -0.910 73.458 -2.769 -10.336 -0.850 -1.173 N11 Y79 25 Y79 N19 N3 N 0 1 N N N -5.470 65.805 -11.332 4.987 -0.300 0.241 N19 Y79 26 Y79 N3 N4 N 0 1 N N N -2.891 72.115 -2.798 -8.060 -1.268 -0.712 N3 Y79 27 Y79 N7 N5 N 0 1 Y N N -3.398 68.774 -1.310 -5.789 1.005 1.156 N7 Y79 28 Y79 O10 O1 O 0 1 N N N -4.923 70.929 -2.917 -5.902 -1.630 -0.251 O10 Y79 29 Y79 O18 O2 O 0 1 N N N -4.604 67.733 -10.554 4.374 -2.210 -0.712 O18 Y79 30 Y79 O24 O3 O 0 1 N N N -6.645 64.164 -15.747 8.390 3.135 -1.861 O24 Y79 31 Y79 O25 O4 O 0 1 N N N -4.557 64.792 -15.770 8.849 2.566 0.224 O25 Y79 32 Y79 O27 O5 O 0 1 N N N -3.877 63.356 -11.045 5.488 -1.726 2.382 O27 Y79 33 Y79 O28 O6 O 0 1 N N N -5.421 62.841 -9.591 7.638 -2.110 2.051 O28 Y79 34 Y79 H1 H1 H 0 1 N N N -0.324 68.760 -0.222 -8.233 3.124 1.526 H1 Y79 35 Y79 H2 H2 H 0 1 N N N -2.479 67.190 -0.208 -5.715 2.923 2.173 H2 Y79 36 Y79 H3 H3 H 0 1 N N N -6.702 65.094 -8.621 3.057 1.304 0.384 H3 Y79 37 Y79 H4 H4 H 0 1 N N N -2.980 67.160 -6.119 -0.324 -1.622 -1.707 H4 Y79 38 Y79 H5 H5 H 0 1 N N N -6.463 64.693 -6.193 0.745 2.090 0.102 H5 Y79 39 Y79 H6 H6 H 0 1 N N N -6.979 64.444 -10.760 6.635 -1.408 -0.434 H6 Y79 40 Y79 H7 H7 H 0 1 N N N -7.274 63.797 -12.904 6.985 1.099 1.270 H7 Y79 41 Y79 H8 H8 H 0 1 N N N -5.614 63.111 -12.922 8.321 0.072 0.696 H8 Y79 42 Y79 H9 H9 H 0 1 N N N -4.781 65.485 -13.381 7.628 0.481 -1.650 H9 Y79 43 Y79 H10 H10 H 0 1 N N N -6.498 65.934 -13.659 6.292 1.507 -1.076 H10 Y79 44 Y79 H11 H11 H 0 1 N N N -5.323 68.921 -2.119 -4.416 -0.553 1.445 H11 Y79 45 Y79 H12 H12 H 0 1 N N N -5.216 68.085 -0.533 -3.970 0.996 2.200 H12 Y79 46 Y79 H13 H13 H 0 1 N N N -5.574 66.305 -2.015 -4.039 0.432 -0.799 H13 Y79 47 Y79 H14 H14 H 0 1 N N N -3.785 66.316 -1.846 -3.593 1.981 -0.044 H14 Y79 48 Y79 H15 H15 H 0 1 N N N -3.556 67.520 -3.959 -1.715 0.867 1.132 H15 Y79 49 Y79 H16 H16 H 0 1 N N N -5.341 67.644 -4.114 -2.161 -0.682 0.377 H16 Y79 50 Y79 H17 H17 H 0 1 N N N -5.383 65.081 -4.126 -1.783 0.303 -1.867 H17 Y79 51 Y79 H18 H18 H 0 1 N N N -3.598 65.149 -4.313 -1.338 1.852 -1.112 H18 Y79 52 Y79 H19 H19 H 0 1 N N N 0.043 73.575 -2.490 -11.120 -0.283 -1.104 H19 Y79 53 Y79 H20 H20 H 0 1 N N N -1.371 74.177 -3.289 -10.391 -1.699 -1.639 H20 Y79 54 Y79 H21 H21 H 0 1 N N N -5.406 66.206 -12.246 4.741 0.588 0.542 H21 Y79 55 Y79 H22 H22 H 0 1 N N N -3.325 72.851 -3.317 -8.134 -2.115 -1.177 H22 Y79 56 Y79 H23 H23 H 0 1 N N N -6.408 63.944 -16.640 9.001 3.879 -1.770 H23 Y79 57 Y79 H24 H24 H 0 1 N N N -4.710 62.288 -9.290 7.654 -2.612 2.877 H24 Y79 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y79 O25 C23 DOUB N N 1 Y79 O24 C23 SING N N 2 Y79 C23 C22 SING N N 3 Y79 C22 C21 SING N N 4 Y79 C21 C20 SING N N 5 Y79 N19 C20 SING N N 6 Y79 N19 C17 SING N N 7 Y79 C20 C26 SING N N 8 Y79 O27 C26 DOUB N N 9 Y79 C26 O28 SING N N 10 Y79 O18 C17 DOUB N N 11 Y79 C17 C12 SING N N 12 Y79 C12 C14 DOUB Y N 13 Y79 C12 C13 SING Y N 14 Y79 F34 C13 SING N N 15 Y79 C14 C16 SING Y N 16 Y79 C13 C15 DOUB Y N 17 Y79 C16 C33 DOUB Y N 18 Y79 C15 C33 SING Y N 19 Y79 C33 C32 SING N N 20 Y79 C32 C31 SING N N 21 Y79 C31 C30 SING N N 22 Y79 O10 C4 DOUB N N 23 Y79 N3 C4 SING N N 24 Y79 N3 C2 SING N N 25 Y79 N11 C2 SING N N 26 Y79 C4 C8 SING N N 27 Y79 C2 N1 DOUB N N 28 Y79 C30 C29 SING N N 29 Y79 C8 C9 DOUB Y N 30 Y79 C8 N7 SING Y N 31 Y79 N1 C9 SING N N 32 Y79 C29 N7 SING N N 33 Y79 C9 C5 SING Y N 34 Y79 N7 C6 SING Y N 35 Y79 C5 C6 DOUB Y N 36 Y79 C5 H1 SING N N 37 Y79 C6 H2 SING N N 38 Y79 C14 H3 SING N N 39 Y79 C15 H4 SING N N 40 Y79 C16 H5 SING N N 41 Y79 C20 H6 SING N N 42 Y79 C21 H7 SING N N 43 Y79 C21 H8 SING N N 44 Y79 C22 H9 SING N N 45 Y79 C22 H10 SING N N 46 Y79 C29 H11 SING N N 47 Y79 C29 H12 SING N N 48 Y79 C30 H13 SING N N 49 Y79 C30 H14 SING N N 50 Y79 C31 H15 SING N N 51 Y79 C31 H16 SING N N 52 Y79 C32 H17 SING N N 53 Y79 C32 H18 SING N N 54 Y79 N11 H19 SING N N 55 Y79 N11 H20 SING N N 56 Y79 N19 H21 SING N N 57 Y79 N3 H22 SING N N 58 Y79 O24 H23 SING N N 59 Y79 O28 H24 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y79 SMILES ACDLabs 12.01 "O=C(O)C(CCC(=O)O)NC(=O)c1ccc(cc1F)CCCCn1ccc2N=C(N)NC(=O)c21" Y79 InChI InChI 1.06 "InChI=1S/C22H24FN5O6/c23-14-11-12(4-5-13(14)19(31)25-16(21(33)34)6-7-17(29)30)3-1-2-9-28-10-8-15-18(28)20(32)27-22(24)26-15/h4-5,8,10-11,16H,1-3,6-7,9H2,(H,25,31)(H,29,30)(H,33,34)(H3,24,26,27,32)/t16-/m0/s1" Y79 InChIKey InChI 1.06 XKLSPKTUYQAZHW-INIZCTEOSA-N Y79 SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2ccn(CCCCc3ccc(c(F)c3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)c2C(=O)N1" Y79 SMILES CACTVS 3.385 "NC1=Nc2ccn(CCCCc3ccc(c(F)c3)C(=O)N[CH](CCC(O)=O)C(O)=O)c2C(=O)N1" Y79 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1CCCCn2ccc3c2C(=O)NC(=N3)N)F)C(=O)N[C@@H](CCC(=O)O)C(=O)O" Y79 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1CCCCn2ccc3c2C(=O)NC(=N3)N)F)C(=O)NC(CCC(=O)O)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y79 "SYSTEMATIC NAME" ACDLabs 12.01 "N-{4-[4-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-2-fluorobenzoyl}-L-glutamic acid" Y79 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[4-[4-(2-azanyl-4-oxidanylidene-3~{H}-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-2-fluoranyl-phenyl]carbonylamino]pentanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y79 "Create component" 2023-01-09 RCSB Y79 "Initial release" 2023-09-06 RCSB #