data_Y7A # _chem_comp.id Y7A _chem_comp.name "[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl]{2-(dimethylamino)-6-[(oxan-4-yl)methoxy]pyridin-4-yl}methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H33 N7 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-12 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 519.595 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y7A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G70 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y7A C10 C1 C 0 1 N N N N N N -11.222 12.832 52.842 -5.206 1.854 0.101 C10 Y7A 1 Y7A C13 C2 C 0 1 N N N N N N -11.010 11.425 50.757 -3.330 3.560 0.011 C13 Y7A 2 Y7A C15 C3 C 0 1 N N S N N N -13.291 10.938 50.664 -1.570 2.129 0.554 C15 Y7A 3 Y7A C16 C4 C 0 1 N N S N N N -12.085 11.241 49.715 -1.926 3.275 -0.476 C16 Y7A 4 Y7A C17 C5 C 0 1 N N N N N N -12.131 10.111 48.719 -0.735 4.170 -0.206 C17 Y7A 5 Y7A C19 C6 C 0 1 N N N N N N -14.421 10.454 49.743 -0.146 1.861 0.189 C19 Y7A 6 Y7A C22 C7 C 0 1 N N N N N N -14.148 9.130 47.606 1.690 3.476 -0.476 C22 Y7A 7 Y7A C23 C8 C 0 1 Y N N N N N -13.278 8.634 46.518 2.730 2.435 -0.301 C23 Y7A 8 Y7A C25 C9 C 0 1 Y N N N N N -12.745 9.603 45.679 4.043 2.782 0.024 C25 Y7A 9 Y7A C26 C10 C 0 1 Y N N N N N -12.017 9.168 44.542 4.988 1.775 0.179 C26 Y7A 10 Y7A C28 C11 C 0 1 Y N N N N N -12.368 6.976 45.122 3.422 0.136 -0.284 C28 Y7A 11 Y7A C1 C12 C 0 1 Y N N N N N -9.791 12.590 53.204 -5.612 0.435 0.152 C1 Y7A 12 Y7A C2 C13 C 0 1 Y N N N N N -9.470 11.249 53.543 -6.803 0.072 0.797 C2 Y7A 13 Y7A C3 C14 C 0 1 Y N N N N N -8.230 10.911 53.982 -7.192 -1.234 0.846 C3 Y7A 14 Y7A C4 C15 C 0 1 Y N N N N N -8.886 13.624 53.276 -4.815 -0.535 -0.444 C4 Y7A 15 Y7A C5 C16 C 0 1 Y N N N N N -7.606 13.297 53.744 -5.208 -1.875 -0.397 C5 Y7A 16 Y7A C6 C17 C 0 1 Y N N N N N -7.275 11.955 54.095 -6.406 -2.220 0.255 C6 Y7A 17 Y7A N7 N1 N 0 1 Y N N N N N -5.937 12.008 54.545 -6.523 -3.583 0.139 N7 Y7A 18 Y7A N8 N2 N 0 1 Y N N N N N -5.529 13.289 54.453 -5.400 -4.024 -0.575 N8 Y7A 19 Y7A N9 N3 N 0 1 Y N N N N N -6.471 14.073 53.999 -4.657 -3.017 -0.873 N9 Y7A 20 Y7A O11 O1 O 0 1 N N N N N N -11.912 13.589 53.513 -6.050 2.724 0.006 O11 Y7A 21 Y7A N12 N4 N 0 1 N N N N N N -11.788 12.239 51.731 -3.901 2.184 0.167 N12 Y7A 22 Y7A C14 C18 C 0 1 N N N N N N -13.268 12.252 51.442 -2.766 1.245 0.408 C14 Y7A 23 Y7A N18 N5 N 0 1 N N N N N N -13.606 9.874 48.616 0.402 3.197 -0.193 N18 Y7A 24 Y7A O24 O2 O 0 1 N N N N N N -15.342 8.872 47.570 1.998 4.582 -0.875 O24 Y7A 25 Y7A N27 N6 N 0 1 Y N N N N N -11.854 7.823 44.267 4.655 0.503 0.023 N27 Y7A 26 Y7A C29 C19 C 0 1 Y N N N N N -13.097 7.278 46.295 2.420 1.080 -0.451 C29 Y7A 27 Y7A O30 O3 O 0 1 N N N N N N -12.143 5.687 44.865 3.132 -1.181 -0.428 O30 Y7A 28 Y7A C31 C20 C 0 1 N N N N N N -11.446 5.385 43.643 4.205 -2.106 -0.244 C31 Y7A 29 Y7A C32 C21 C 0 1 N N N N N N -11.374 3.851 43.482 3.689 -3.533 -0.444 C32 Y7A 30 Y7A C33 C22 C 0 1 N N N N N N -10.696 3.582 42.107 4.861 -4.516 -0.371 C33 Y7A 31 Y7A C34 C23 C 0 1 N N N N N N -10.480 2.055 41.961 4.326 -5.945 -0.493 C34 Y7A 32 Y7A O35 O4 O 0 1 N N N N N N -9.617 1.561 43.006 3.372 -6.186 0.543 O35 Y7A 33 Y7A C36 C24 C 0 1 N N N N N N -10.090 1.818 44.331 2.231 -5.327 0.496 C36 Y7A 34 Y7A C37 C25 C 0 1 N N N N N N -10.493 3.285 44.576 2.682 -3.873 0.659 C37 Y7A 35 Y7A N38 N7 N 0 1 N N N N N N -11.399 10.097 43.649 6.299 2.107 0.503 N38 Y7A 36 Y7A C39 C26 C 0 1 N N N N N N -12.158 11.369 43.433 6.653 3.500 0.785 C39 Y7A 37 Y7A C40 C27 C 0 1 N N N N N N -10.789 9.567 42.418 7.326 1.064 0.562 C40 Y7A 38 Y7A H46 H1 H 0 1 N N N N N N -10.139 11.970 50.363 -3.310 4.081 0.968 H46 Y7A 39 Y7A H45 H2 H 0 1 N N N N N N -10.680 10.468 51.186 -3.888 4.133 -0.729 H45 Y7A 40 Y7A H20 H3 H 0 1 N N N N N N -13.006 10.118 51.339 -1.596 2.565 1.553 H20 Y7A 41 Y7A H21 H4 H 0 1 N N N N N N -12.268 12.196 49.200 -1.931 2.910 -1.503 H21 Y7A 42 Y7A H50 H5 H 0 1 N N N N N N -11.702 10.409 47.751 -0.611 4.901 -1.005 H50 Y7A 43 Y7A H49 H6 H 0 1 N N N N N N -11.605 9.221 49.095 -0.833 4.664 0.761 H49 Y7A 44 Y7A H51 H7 H 0 1 N N N N N N -15.046 9.691 50.230 0.397 1.458 1.044 H51 Y7A 45 Y7A H52 H8 H 0 1 N N N N N N -15.055 11.286 49.403 -0.093 1.171 -0.654 H52 Y7A 46 Y7A H53 H9 H 0 1 N N N N N N -12.880 10.654 45.885 4.320 3.818 0.152 H53 Y7A 47 Y7A H41 H10 H 0 1 N N N N N N -10.226 10.483 53.450 -7.417 0.832 1.257 H41 Y7A 48 Y7A H42 H11 H 0 1 N N N N N N -7.981 9.891 54.234 -8.111 -1.504 1.345 H42 Y7A 49 Y7A H43 H12 H 0 1 N N N N N N -9.147 14.631 52.988 -3.898 -0.254 -0.940 H43 Y7A 50 Y7A H44 H13 H 0 1 N N N N N N -5.392 11.236 54.872 -7.243 -4.134 0.484 H44 Y7A 51 Y7A H47 H14 H 0 1 N N N N N N -13.880 12.216 52.356 -2.641 0.573 -0.442 H47 Y7A 52 Y7A H48 H15 H 0 1 N N N N N N -13.574 13.113 50.830 -2.931 0.675 1.322 H48 Y7A 53 Y7A H54 H16 H 0 1 N N N N N N -13.480 6.518 46.960 1.414 0.773 -0.698 H54 Y7A 54 Y7A H56 H17 H 0 1 N N N N N N -11.987 5.822 42.790 4.992 -1.899 -0.970 H56 Y7A 55 Y7A H55 H18 H 0 1 N N N N N N -10.429 5.801 43.684 4.605 -2.003 0.765 H55 Y7A 56 Y7A H57 H19 H 0 1 N N N N N N -12.380 3.407 43.511 3.207 -3.613 -1.418 H57 Y7A 57 Y7A H59 H20 H 0 1 N N N N N N -11.344 3.945 41.296 5.556 -4.316 -1.186 H59 Y7A 58 Y7A H58 H21 H 0 1 N N N N N N -9.727 4.101 42.062 5.375 -4.400 0.584 H58 Y7A 59 Y7A H60 H22 H 0 1 N N N N N N -11.453 1.545 42.024 3.848 -6.073 -1.464 H60 Y7A 60 Y7A H61 H23 H 0 1 N N N N N N -10.020 1.847 40.984 5.151 -6.652 -0.399 H61 Y7A 61 Y7A H63 H24 H 0 1 N N N N N N -10.969 1.182 44.515 1.725 -5.446 -0.462 H63 Y7A 62 Y7A H62 H25 H 0 1 N N N N N N -9.292 1.555 45.041 1.547 -5.587 1.304 H62 Y7A 63 Y7A H65 H26 H 0 1 N N N N N N -9.579 3.893 44.639 3.152 -3.744 1.634 H65 Y7A 64 Y7A H64 H27 H 0 1 N N N N N N -11.038 3.343 45.530 1.818 -3.213 0.579 H64 Y7A 65 Y7A H68 H28 H 0 1 N N N N N N -11.604 12.013 42.735 6.533 3.697 1.850 H68 Y7A 66 Y7A H66 H29 H 0 1 N N N N N N -13.148 11.138 43.012 7.689 3.677 0.497 H66 Y7A 67 Y7A H67 H30 H 0 1 N N N N N N -12.281 11.890 44.394 6.000 4.163 0.217 H67 Y7A 68 Y7A H71 H31 H 0 1 N N N N N N -10.357 10.395 41.837 7.788 0.954 -0.419 H71 Y7A 69 Y7A H70 H32 H 0 1 N N N N N N -9.997 8.851 42.681 8.085 1.342 1.292 H70 Y7A 70 Y7A H69 H33 H 0 1 N N N N N N -11.558 9.059 41.817 6.868 0.119 0.856 H69 Y7A 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y7A C1 C2 DOUB Y N 1 Y7A C1 C4 SING Y N 2 Y7A C1 C10 SING N N 3 Y7A C2 C3 SING Y N 4 Y7A C3 C6 DOUB Y N 5 Y7A C4 C5 DOUB Y N 6 Y7A C5 C6 SING Y N 7 Y7A C5 N9 SING Y N 8 Y7A C6 N7 SING Y N 9 Y7A N7 N8 SING Y N 10 Y7A N8 N9 DOUB Y N 11 Y7A C10 O11 DOUB N N 12 Y7A C10 N12 SING N N 13 Y7A N12 C13 SING N N 14 Y7A N12 C14 SING N N 15 Y7A C13 C16 SING N N 16 Y7A C14 C15 SING N N 17 Y7A C15 C16 SING N N 18 Y7A C15 C19 SING N N 19 Y7A C16 C17 SING N N 20 Y7A C17 N18 SING N N 21 Y7A N18 C19 SING N N 22 Y7A N18 C22 SING N N 23 Y7A C22 C23 SING N N 24 Y7A C22 O24 DOUB N N 25 Y7A C23 C25 DOUB Y N 26 Y7A C23 C29 SING Y N 27 Y7A C25 C26 SING Y N 28 Y7A C26 N27 DOUB Y N 29 Y7A C26 N38 SING N N 30 Y7A N27 C28 SING Y N 31 Y7A C28 C29 DOUB Y N 32 Y7A C28 O30 SING N N 33 Y7A O30 C31 SING N N 34 Y7A C31 C32 SING N N 35 Y7A C32 C33 SING N N 36 Y7A C32 C37 SING N N 37 Y7A C33 C34 SING N N 38 Y7A C34 O35 SING N N 39 Y7A O35 C36 SING N N 40 Y7A C36 C37 SING N N 41 Y7A N38 C39 SING N N 42 Y7A N38 C40 SING N N 43 Y7A C13 H46 SING N N 44 Y7A C13 H45 SING N N 45 Y7A C15 H20 SING N N 46 Y7A C16 H21 SING N N 47 Y7A C17 H50 SING N N 48 Y7A C17 H49 SING N N 49 Y7A C19 H51 SING N N 50 Y7A C19 H52 SING N N 51 Y7A C25 H53 SING N N 52 Y7A C2 H41 SING N N 53 Y7A C3 H42 SING N N 54 Y7A C4 H43 SING N N 55 Y7A N7 H44 SING N N 56 Y7A C14 H47 SING N N 57 Y7A C14 H48 SING N N 58 Y7A C29 H54 SING N N 59 Y7A C31 H56 SING N N 60 Y7A C31 H55 SING N N 61 Y7A C32 H57 SING N N 62 Y7A C33 H59 SING N N 63 Y7A C33 H58 SING N N 64 Y7A C34 H60 SING N N 65 Y7A C34 H61 SING N N 66 Y7A C36 H63 SING N N 67 Y7A C36 H62 SING N N 68 Y7A C37 H65 SING N N 69 Y7A C37 H64 SING N N 70 Y7A C39 H68 SING N N 71 Y7A C39 H66 SING N N 72 Y7A C39 H67 SING N N 73 Y7A C40 H71 SING N N 74 Y7A C40 H70 SING N N 75 Y7A C40 H69 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y7A SMILES ACDLabs 12.01 "O=C(c1ccc2[NH]nnc2c1)N1CC2CN(CC2C1)C(=O)c1cc(OCC2CCOCC2)nc(c1)N(C)C" Y7A InChI InChI 1.06 "InChI=1S/C27H33N7O4/c1-32(2)24-10-19(11-25(28-24)38-16-17-5-7-37-8-6-17)27(36)34-14-20-12-33(13-21(20)15-34)26(35)18-3-4-22-23(9-18)30-31-29-22/h3-4,9-11,17,20-21H,5-8,12-16H2,1-2H3,(H,29,30,31)" Y7A InChIKey InChI 1.06 XTVNPWUYIUFOIQ-UHFFFAOYSA-N Y7A SMILES_CANONICAL CACTVS 3.385 "CN(C)c1cc(cc(OCC2CCOCC2)n1)C(=O)N3C[C@@H]4CN(C[C@H]4C3)C(=O)c5ccc6[nH]nnc6c5" Y7A SMILES CACTVS 3.385 "CN(C)c1cc(cc(OCC2CCOCC2)n1)C(=O)N3C[CH]4CN(C[CH]4C3)C(=O)c5ccc6[nH]nnc6c5" Y7A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)c1cc(cc(n1)OCC2CCOCC2)C(=O)N3C[C@@H]4CN(C[C@H]4C3)C(=O)c5ccc6c(c5)nn[nH]6" Y7A SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)c1cc(cc(n1)OCC2CCOCC2)C(=O)N3CC4CN(CC4C3)C(=O)c5ccc6c(c5)nn[nH]6" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y7A "SYSTEMATIC NAME" ACDLabs 12.01 "[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl]{2-(dimethylamino)-6-[(oxan-4-yl)methoxy]pyridin-4-yl}methanone" Y7A "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{a}~{S},6~{a}~{S})-5-[2-(dimethylamino)-6-(oxan-4-ylmethoxy)pyridin-4-yl]carbonyl-1,3,3~{a},4,6,6~{a}-hexahydropyrrolo[3,4-c]pyrrol-2-yl]-(1~{H}-benzotriazol-5-yl)methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y7A "Create component" 2023-06-12 RCSB Y7A "Initial release" 2024-12-18 RCSB #