data_Y7K # _chem_comp.id Y7K _chem_comp.name "(2R,4R,4aS,5aR,6S,7S,8R,9S,9aR,10aS)-2-methyl-6,8-bis(methylamino)-4-({[2-(oxan-4-yl)ethyl]amino}methyl)octahydro-2H-pyrano[2,3-b][1,4]benzodioxine-4,4a,7,9(10aH)-tetrol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H41 N3 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-26 _chem_comp.pdbx_modified_date 2024-08-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 475.576 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y7K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8UVS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y7K CAB C1 C 0 1 N N N N N N 111.637 50.496 11.066 -4.830 3.416 0.980 CAB Y7K 1 Y7K CAC C2 C 0 1 N N S N N N 114.046 50.225 10.952 -4.172 1.197 0.267 CAC Y7K 2 Y7K CAE C3 C 0 1 N N S N N N 115.128 50.512 9.924 -5.475 0.593 -0.264 CAE Y7K 3 Y7K CAF C4 C 0 1 N N R N N N 115.774 49.406 12.537 -3.029 -0.996 -0.048 CAF Y7K 4 Y7K CAI C5 C 0 1 N N R N N N 116.274 49.551 10.131 -5.517 -0.903 0.051 CAI Y7K 5 Y7K CAK C6 C 0 1 N N S N N N 116.831 49.707 11.516 -4.319 -1.604 -0.596 CAK Y7K 6 Y7K CAL C7 C 0 1 N N S N N N 114.031 49.980 14.649 -0.604 0.402 -0.485 CAL Y7K 7 Y7K NAM N1 N 0 1 N N N N N N 117.343 49.784 9.157 -6.762 -1.478 -0.477 NAM Y7K 8 Y7K CAN C8 C 0 1 N N S N N N 115.351 49.241 14.840 -0.647 -1.092 -0.157 CAN Y7K 9 Y7K CAD C9 C 0 1 N N R N N N 114.596 50.317 12.364 -2.987 0.495 -0.396 CAD Y7K 10 Y7K CAQ C10 C 0 1 N N R N N N 112.969 49.362 15.560 0.662 1.023 0.107 CAQ Y7K 11 Y7K CAR C11 C 0 1 N N N N N N 116.824 49.544 7.805 -7.860 -1.333 0.489 CAR Y7K 12 Y7K CAU C12 C 0 1 N N N N N N 112.913 47.878 15.289 0.700 0.751 1.614 CAU Y7K 13 Y7K CAV C13 C 0 1 N N R N N N 114.297 47.287 15.510 0.627 -0.760 1.850 CAV Y7K 14 Y7K CAW C14 C 0 1 N N N N N N 114.291 45.786 15.225 0.615 -1.042 3.354 CAW Y7K 15 Y7K CAX C15 C 0 1 N N N N N N 113.334 49.585 17.013 1.893 0.401 -0.555 CAX Y7K 16 Y7K CAZ C16 C 0 1 N N N N N N 111.723 50.359 18.594 4.313 0.333 -0.515 CAZ Y7K 17 Y7K CBA C17 C 0 1 N N N N N N 112.587 50.658 19.820 5.555 0.884 0.189 CBA Y7K 18 Y7K CBB C18 C 0 1 N N N N N N 111.679 50.789 21.046 6.810 0.284 -0.448 CBB Y7K 19 Y7K CBC C19 C 0 1 N N N N N N 111.417 49.400 21.631 8.056 0.927 0.170 CBC Y7K 20 Y7K CBD C20 C 0 1 N N N N N N 111.059 49.550 23.101 9.306 0.265 -0.416 CBD Y7K 21 Y7K CBF C21 C 0 1 N N N N N N 113.130 50.839 23.061 8.142 -1.804 -0.758 CBF Y7K 22 Y7K CBG C22 C 0 1 N N N N N N 112.312 51.690 22.106 6.846 -1.225 -0.187 CBG Y7K 23 Y7K NAA N2 N 0 1 N N N N N N 112.923 51.159 10.780 -4.131 2.632 -0.047 NAA Y7K 24 Y7K NAY N3 N 0 1 N N N N N N 112.217 49.177 17.875 3.108 0.909 0.097 NAY Y7K 25 Y7K OAG O1 O 0 1 N N N N N N 113.598 49.860 13.286 -1.755 1.048 0.070 OAG Y7K 26 Y7K OAH O2 O 0 1 N N N N N N 115.593 51.846 10.066 -5.544 0.783 -1.679 OAH Y7K 27 Y7K OAJ O3 O 0 1 N N N N N N 116.310 49.627 13.846 -1.889 -1.640 -0.619 OAJ Y7K 28 Y7K OAO O4 O 0 1 N N N N N N 117.893 48.758 11.673 -4.358 -2.999 -0.290 OAO Y7K 29 Y7K OAP O5 O 0 1 N N N N N N 114.218 51.369 14.965 -0.600 0.577 -1.903 OAP Y7K 30 Y7K OAS O6 O 0 1 N N N N N N 115.202 47.875 14.604 -0.548 -1.275 1.257 OAS Y7K 31 Y7K OAT O7 O 0 1 N N N N N N 111.673 49.941 15.332 0.656 2.433 -0.124 OAT Y7K 32 Y7K OBE O8 O 0 1 N N N N N N 112.238 49.987 23.840 9.261 -1.141 -0.165 OBE Y7K 33 Y7K H1 H1 H 0 1 N N N N N N 110.815 51.215 10.930 -5.872 3.099 1.033 H1 Y7K 34 Y7K H2 H2 H 0 1 N N N N N N 111.500 49.649 10.378 -4.353 3.256 1.947 H2 Y7K 35 Y7K H3 H3 H 0 1 N N N N N N 111.636 50.130 12.103 -4.785 4.474 0.723 H3 Y7K 36 Y7K H4 H4 H 0 1 N N N N N N 113.682 49.199 10.791 -4.120 1.059 1.347 H4 Y7K 37 Y7K H5 H5 H 0 1 N N N N N N 114.711 50.360 8.918 -6.323 1.086 0.210 H5 Y7K 38 Y7K H6 H6 H 0 1 N N N N N N 115.448 48.361 12.428 -3.006 -1.112 1.036 H6 Y7K 39 Y7K H7 H7 H 0 1 N N N N N N 115.897 48.524 10.016 -5.482 -1.048 1.131 H7 Y7K 40 Y7K H8 H8 H 0 1 N N N N N N 117.201 50.733 11.655 -4.357 -1.467 -1.677 H8 Y7K 41 Y7K H9 H9 H 0 1 N N N N N N 118.103 49.160 9.339 -6.633 -2.445 -0.735 H9 Y7K 42 Y7K H11 H11 H 0 1 N N N N N N 115.737 49.434 15.852 0.182 -1.599 -0.651 H11 Y7K 43 Y7K H12 H12 H 0 1 N N N N N N 114.888 51.355 12.582 -3.052 0.617 -1.477 H12 Y7K 44 Y7K H13 H13 H 0 1 N N N N N N 117.623 49.718 7.069 -8.747 -1.841 0.110 H13 Y7K 45 Y7K H14 H14 H 0 1 N N N N N N 116.473 48.505 7.726 -7.567 -1.774 1.441 H14 Y7K 46 Y7K H15 H15 H 0 1 N N N N N N 115.987 50.230 7.606 -8.081 -0.275 0.632 H15 Y7K 47 Y7K H16 H16 H 0 1 N N N N N N 112.598 47.704 14.250 1.624 1.143 2.039 H16 Y7K 48 Y7K H17 H17 H 0 1 N N N N N N 112.195 47.404 15.974 -0.155 1.236 2.087 H17 Y7K 49 Y7K H18 H18 H 0 1 N N N N N N 114.609 47.460 16.551 1.495 -1.240 1.398 H18 Y7K 50 Y7K H19 H19 H 0 1 N N N N N N 113.594 45.284 15.913 -0.253 -0.562 3.806 H19 Y7K 51 Y7K H20 H20 H 0 1 N N N N N N 113.971 45.611 14.187 0.563 -2.118 3.522 H20 Y7K 52 Y7K H21 H21 H 0 1 N N N N N N 115.304 45.381 15.369 1.525 -0.647 3.806 H21 Y7K 53 Y7K H22 H22 H 0 1 N N N N N N 114.224 48.988 17.262 1.852 -0.683 -0.453 H22 Y7K 54 Y7K H23 H23 H 0 1 N N N N N N 113.550 50.651 17.176 1.910 0.667 -1.612 H23 Y7K 55 Y7K H24 H24 H 0 1 N N N N N N 111.746 51.226 17.918 4.347 0.597 -1.571 H24 Y7K 56 Y7K H25 H25 H 0 1 N N N N N N 110.688 50.175 18.920 4.289 -0.752 -0.412 H25 Y7K 57 Y7K H26 H26 H 0 1 N N N N N N 113.303 49.837 19.976 5.579 1.969 0.086 H26 Y7K 58 Y7K H27 H27 H 0 1 N N N N N N 113.136 51.599 19.665 5.522 0.619 1.246 H27 Y7K 59 Y7K H28 H28 H 0 1 N N N N N N 110.721 51.229 20.732 6.799 0.469 -1.522 H28 Y7K 60 Y7K H29 H29 H 0 1 N N N N N N 110.584 48.923 21.094 8.067 1.993 -0.059 H29 Y7K 61 Y7K H30 H30 H 0 1 N N N N N N 112.320 48.780 21.531 8.041 0.785 1.250 H30 Y7K 62 Y7K H31 H31 H 0 1 N N N N N N 110.259 50.297 23.210 9.341 0.442 -1.491 H31 Y7K 63 Y7K H32 H32 H 0 1 N N N N N N 110.715 48.583 23.496 10.194 0.689 0.052 H32 Y7K 64 Y7K H33 H33 H 0 1 N N N N N N 113.828 50.211 22.487 8.193 -2.870 -0.538 H33 Y7K 65 Y7K H34 H34 H 0 1 N N N N N N 113.698 51.492 23.740 8.163 -1.655 -1.838 H34 Y7K 66 Y7K H35 H35 H 0 1 N N N N N N 112.966 52.428 21.619 6.806 -1.410 0.887 H35 Y7K 67 Y7K H36 H36 H 0 1 N N N N N N 111.521 52.213 22.664 5.991 -1.699 -0.670 H36 Y7K 68 Y7K H37 H37 H 0 1 N N N N N N 113.040 51.930 11.406 -3.181 2.950 -0.160 H37 Y7K 69 Y7K H39 H39 H 0 1 N N N N N N 111.483 48.792 17.315 3.137 1.918 0.072 H39 Y7K 70 Y7K H41 H41 H 0 1 N N N N N N 114.871 52.449 9.935 -6.348 0.428 -2.084 H41 Y7K 71 Y7K H42 H42 H 0 1 N N N N N N 118.263 48.837 12.544 -5.107 -3.467 -0.684 H42 Y7K 72 Y7K H43 H43 H 0 1 N N N N N N 114.505 51.453 15.867 -1.376 0.209 -2.347 H43 Y7K 73 Y7K H44 H44 H 0 1 N N N N N N 111.038 49.536 15.912 1.431 2.892 0.226 H44 Y7K 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y7K CAR NAM SING N N 1 Y7K NAM CAI SING N N 2 Y7K CAE OAH SING N N 3 Y7K CAE CAI SING N N 4 Y7K CAE CAC SING N N 5 Y7K CAI CAK SING N N 6 Y7K NAA CAC SING N N 7 Y7K NAA CAB SING N N 8 Y7K CAC CAD SING N N 9 Y7K CAK OAO SING N N 10 Y7K CAK CAF SING N N 11 Y7K CAD CAF SING N N 12 Y7K CAD OAG SING N N 13 Y7K CAF OAJ SING N N 14 Y7K OAG CAL SING N N 15 Y7K OAJ CAN SING N N 16 Y7K OAS CAN SING N N 17 Y7K OAS CAV SING N N 18 Y7K CAL CAN SING N N 19 Y7K CAL OAP SING N N 20 Y7K CAL CAQ SING N N 21 Y7K CAW CAV SING N N 22 Y7K CAU CAV SING N N 23 Y7K CAU CAQ SING N N 24 Y7K OAT CAQ SING N N 25 Y7K CAQ CAX SING N N 26 Y7K CAX NAY SING N N 27 Y7K NAY CAZ SING N N 28 Y7K CAZ CBA SING N N 29 Y7K CBA CBB SING N N 30 Y7K CBB CBC SING N N 31 Y7K CBB CBG SING N N 32 Y7K CBC CBD SING N N 33 Y7K CBG CBF SING N N 34 Y7K CBF OBE SING N N 35 Y7K CBD OBE SING N N 36 Y7K CAB H1 SING N N 37 Y7K CAB H2 SING N N 38 Y7K CAB H3 SING N N 39 Y7K CAC H4 SING N N 40 Y7K CAE H5 SING N N 41 Y7K CAF H6 SING N N 42 Y7K CAI H7 SING N N 43 Y7K CAK H8 SING N N 44 Y7K NAM H9 SING N N 45 Y7K CAN H11 SING N N 46 Y7K CAD H12 SING N N 47 Y7K CAR H13 SING N N 48 Y7K CAR H14 SING N N 49 Y7K CAR H15 SING N N 50 Y7K CAU H16 SING N N 51 Y7K CAU H17 SING N N 52 Y7K CAV H18 SING N N 53 Y7K CAW H19 SING N N 54 Y7K CAW H20 SING N N 55 Y7K CAW H21 SING N N 56 Y7K CAX H22 SING N N 57 Y7K CAX H23 SING N N 58 Y7K CAZ H24 SING N N 59 Y7K CAZ H25 SING N N 60 Y7K CBA H26 SING N N 61 Y7K CBA H27 SING N N 62 Y7K CBB H28 SING N N 63 Y7K CBC H29 SING N N 64 Y7K CBC H30 SING N N 65 Y7K CBD H31 SING N N 66 Y7K CBD H32 SING N N 67 Y7K CBF H33 SING N N 68 Y7K CBF H34 SING N N 69 Y7K CBG H35 SING N N 70 Y7K CBG H36 SING N N 71 Y7K NAA H37 SING N N 72 Y7K NAY H39 SING N N 73 Y7K OAH H41 SING N N 74 Y7K OAO H42 SING N N 75 Y7K OAP H43 SING N N 76 Y7K OAT H44 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y7K SMILES ACDLabs 12.01 "CC1OC2OC3C(OC2(O)C(O)(CNCCC2CCOCC2)C1)C(NC)C(O)C(NC)C3O" Y7K InChI InChI 1.06 "InChI=1S/C22H41N3O8/c1-12-10-21(28,11-25-7-4-13-5-8-30-9-6-13)22(29)20(31-12)32-19-17(27)14(23-2)16(26)15(24-3)18(19)33-22/h12-20,23-29H,4-11H2,1-3H3/t12-,14-,15+,16+,17+,18-,19-,20+,21-,22-/m1/s1" Y7K InChIKey InChI 1.06 LKCDGONKFJKONL-WUYRLSBSSA-N Y7K SMILES_CANONICAL CACTVS 3.385 "CN[C@@H]1[C@H](O)[C@H](NC)[C@H]2O[C@]3(O)[C@@H](O[C@H](C)C[C@@]3(O)CNCCC4CCOCC4)O[C@@H]2[C@H]1O" Y7K SMILES CACTVS 3.385 "CN[CH]1[CH](O)[CH](NC)[CH]2O[C]3(O)[CH](O[CH](C)C[C]3(O)CNCCC4CCOCC4)O[CH]2[CH]1O" Y7K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1C[C@]([C@]2([C@@H](O1)O[C@@H]3[C@H]([C@@H]([C@@H]([C@@H]([C@H]3O2)NC)O)NC)O)O)(CNCCC4CCOCC4)O" Y7K SMILES "OpenEye OEToolkits" 2.0.7 "CC1CC(C2(C(O1)OC3C(C(C(C(C3O2)NC)O)NC)O)O)(CNCCC4CCOCC4)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y7K "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,4R,4aS,5aR,6S,7S,8R,9S,9aR,10aS)-2-methyl-6,8-bis(methylamino)-4-({[2-(oxan-4-yl)ethyl]amino}methyl)octahydro-2H-pyrano[2,3-b][1,4]benzodioxine-4,4a,7,9(10aH)-tetrol" Y7K "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},3~{S},5~{R},7~{R},8~{S},10~{R},11~{S},12~{S},13~{R},14~{S})-5-methyl-11,13-bis(methylamino)-7-[[2-(oxan-4-yl)ethylamino]methyl]-2,4,9-trioxatricyclo[8.4.0.0^{3,8}]tetradecane-7,8,12,14-tetrol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y7K "Create component" 2023-11-26 RCSB Y7K "Initial release" 2024-08-07 RCSB #