data_Y7M # _chem_comp.id Y7M _chem_comp.name "(1S,2S)-2-((S)-2-(((adamantan-1-ylmethoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H41 N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-09 _chem_comp.pdbx_modified_date 2021-02-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 543.673 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y7M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LKT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y7M C02 C1 C 0 1 N N N 10.748 23.868 26.828 -2.274 0.559 0.754 C02 Y7M 1 Y7M C04 C2 C 0 1 N N S 11.687 21.964 28.005 0.116 0.311 1.159 C04 Y7M 2 Y7M C05 C3 C 0 1 N N N 12.828 21.645 29.037 0.213 -0.242 2.582 C05 Y7M 3 Y7M C06 C4 C 0 1 N N N 14.223 21.915 28.390 -0.897 0.366 3.442 C06 Y7M 4 Y7M C07 C5 C 0 1 N N N 14.562 20.889 27.285 -0.879 -0.279 4.829 C07 Y7M 5 Y7M C08 C6 C 0 1 N N N 15.318 21.904 29.472 -0.670 1.873 3.577 C08 Y7M 6 Y7M C09 C7 C 0 1 N N N 10.357 21.393 28.460 1.280 -0.192 0.345 C09 Y7M 7 Y7M C11 C8 C 0 1 N N S 8.620 19.628 28.379 3.673 -0.391 -0.070 C11 Y7M 8 Y7M C12 C9 C 0 1 N N N 7.713 19.608 27.080 4.815 0.625 -0.009 C12 Y7M 9 Y7M C13 C10 C 0 1 N N S 7.336 21.027 26.624 4.346 1.956 -0.601 C13 Y7M 10 Y7M C14 C11 C 0 1 N N N 6.412 20.994 25.430 5.451 2.987 -0.528 C14 Y7M 11 Y7M C16 C12 C 0 1 N N N 5.429 22.442 26.917 4.549 3.168 -2.660 C16 Y7M 12 Y7M C17 C13 C 0 1 N N N 6.477 21.757 27.698 4.067 1.806 -2.115 C17 Y7M 13 Y7M C19 C14 C 0 1 N N S 8.910 18.201 28.933 4.151 -1.730 0.496 C19 Y7M 14 Y7M C23 C15 C 0 1 N N N 9.633 25.649 25.764 -4.609 0.948 0.454 C23 Y7M 15 Y7M C24 C16 C 0 1 N N N 9.761 27.224 25.752 -5.810 0.336 -0.271 C24 Y7M 16 Y7M C25 C17 C 0 1 N N N 9.384 27.777 27.120 -7.058 1.174 0.011 C25 Y7M 17 Y7M C26 C18 C 0 1 N N N 9.396 29.314 27.141 -8.258 0.562 -0.713 C26 Y7M 18 Y7M C27 C19 C 0 1 N N N 8.517 29.839 26.007 -8.481 -0.867 -0.214 C27 Y7M 19 Y7M C28 C20 C 0 1 N N N 8.950 29.308 24.624 -7.232 -1.706 -0.497 C28 Y7M 20 Y7M C29 C21 C 0 1 N N N 8.921 27.778 24.606 -6.032 -1.093 0.228 C29 Y7M 21 Y7M C30 C22 C 0 1 N N N 10.418 29.730 24.365 -6.962 -1.727 -2.003 C30 Y7M 22 Y7M C31 C23 C 0 1 N N N 11.348 29.238 25.514 -6.740 -0.298 -2.501 C31 Y7M 23 Y7M C32 C24 C 0 1 N N N 11.250 27.680 25.539 -5.540 0.314 -1.777 C32 Y7M 24 Y7M C33 C25 C 0 1 N N N 10.840 29.794 26.874 -7.988 0.540 -2.219 C33 Y7M 25 Y7M N03 N1 N 0 1 N N N 11.520 23.405 27.859 -1.137 -0.135 0.545 N03 Y7M 26 Y7M N10 N2 N 0 1 N N N 9.915 20.188 27.987 2.541 0.098 0.722 N10 Y7M 27 Y7M N15 N3 N 0 1 N N N 5.289 21.807 25.586 5.545 3.646 -1.695 N15 Y7M 28 Y7M O01 O1 O 0 1 N N N 10.130 23.121 26.041 -2.259 1.555 1.450 O01 Y7M 29 Y7M O18 O2 O 0 1 N N N 6.554 20.346 24.367 6.149 3.188 0.443 O18 Y7M 30 Y7M O20 O3 O 0 1 N N N 7.661 17.679 29.433 3.053 -2.642 0.553 O20 Y7M 31 Y7M O21 O4 O 0 1 N N N 9.609 22.054 29.238 1.082 -0.857 -0.650 O21 Y7M 32 Y7M O22 O5 O 0 1 N N N 10.673 25.208 26.641 -3.425 0.152 0.186 O22 Y7M 33 Y7M H1 H1 H 0 1 N N N 11.959 21.518 27.037 0.138 1.400 1.190 H1 Y7M 34 Y7M H2 H2 H 0 1 N N N 12.707 22.285 29.923 0.101 -1.326 2.559 H2 Y7M 35 Y7M H3 H3 H 0 1 N N N 12.764 20.589 29.336 1.183 0.015 3.007 H3 Y7M 36 Y7M H4 H4 H 0 1 N N N 14.199 22.916 27.934 -1.863 0.185 2.970 H4 Y7M 37 Y7M H5 H5 H 0 1 N N N 15.550 21.119 26.861 0.086 -0.098 5.301 H5 Y7M 38 Y7M H6 H6 H 0 1 N N N 14.575 19.877 27.716 -1.670 0.155 5.442 H6 Y7M 39 Y7M H7 H7 H 0 1 N N N 13.802 20.940 26.492 -1.041 -1.352 4.733 H7 Y7M 40 Y7M H8 H8 H 0 1 N N N 15.069 22.637 30.254 0.296 2.054 4.049 H8 Y7M 41 Y7M H9 H9 H 0 1 N N N 15.383 20.900 29.917 -0.683 2.332 2.588 H9 Y7M 42 Y7M H10 H10 H 0 1 N N N 16.285 22.167 29.018 -1.461 2.306 4.189 H10 Y7M 43 Y7M H11 H11 H 0 1 N N N 8.139 20.241 29.155 3.361 -0.525 -1.106 H11 Y7M 44 Y7M H12 H12 H 0 1 N N N 6.792 19.048 27.298 5.113 0.775 1.029 H12 Y7M 45 Y7M H13 H13 H 0 1 N N N 8.263 19.108 26.269 5.665 0.252 -0.581 H13 Y7M 46 Y7M H14 H14 H 0 1 N N N 8.241 21.611 26.401 3.456 2.310 -0.082 H14 Y7M 47 Y7M H15 H15 H 0 1 N N N 5.704 23.499 26.789 5.004 3.042 -3.642 H15 Y7M 48 Y7M H16 H16 H 0 1 N N N 4.472 22.374 27.455 3.714 3.867 -2.720 H16 Y7M 49 Y7M H17 H17 H 0 1 N N N 6.032 21.035 28.399 4.649 0.988 -2.539 H17 Y7M 50 Y7M H18 H18 H 0 1 N N N 7.085 22.484 28.257 3.003 1.664 -2.303 H18 Y7M 51 Y7M H19 H19 H 0 1 N N N 9.583 18.335 29.793 4.550 -1.579 1.499 H19 Y7M 52 Y7M S1 S1 S 0 1 N Y N 9.303 17.569 28.164 5.448 -2.411 -0.574 S1 Y7M 53 Y7M H21 H21 H 0 1 N N N 8.648 25.343 26.145 -4.451 1.966 0.098 H21 Y7M 54 Y7M H22 H22 H 0 1 N N N 9.778 25.240 24.753 -4.802 0.964 1.526 H22 Y7M 55 Y7M H23 H23 H 0 1 N N N 8.374 27.426 27.379 -7.250 1.190 1.084 H23 Y7M 56 Y7M H24 H24 H 0 1 N N N 10.104 27.406 27.864 -6.899 2.193 -0.344 H24 Y7M 57 Y7M H25 H25 H 0 1 N N N 9.041 29.689 28.112 -9.147 1.160 -0.512 H25 Y7M 58 Y7M H26 H26 H 0 1 N N N 8.575 30.937 25.996 -8.673 -0.851 0.858 H26 Y7M 59 Y7M H27 H27 H 0 1 N N N 7.478 29.528 26.194 -9.336 -1.303 -0.731 H27 Y7M 60 Y7M H28 H28 H 0 1 N N N 8.295 29.713 23.839 -7.391 -2.724 -0.141 H28 Y7M 61 Y7M H29 H29 H 0 1 N N N 7.882 27.433 24.716 -5.143 -1.691 0.027 H29 Y7M 62 Y7M H30 H30 H 0 1 N N N 9.328 27.418 23.650 -6.224 -1.078 1.301 H30 Y7M 63 Y7M H31 H31 H 0 1 N N N 10.757 29.292 23.415 -6.073 -2.325 -2.204 H31 Y7M 64 Y7M H32 H32 H 0 1 N N N 10.472 30.827 24.303 -7.817 -2.164 -2.519 H32 Y7M 65 Y7M H33 H33 H 0 1 N N N 12.386 29.555 25.331 -6.548 -0.314 -3.574 H33 Y7M 66 Y7M H34 H34 H 0 1 N N N 11.618 27.279 24.583 -5.381 1.332 -2.132 H34 Y7M 67 Y7M H35 H35 H 0 1 N N N 11.868 27.292 26.362 -4.650 -0.283 -1.978 H35 Y7M 68 Y7M H36 H36 H 0 1 N N N 11.497 29.436 27.681 -8.843 0.104 -2.735 H36 Y7M 69 Y7M H37 H37 H 0 1 N N N 10.858 30.894 26.847 -7.830 1.559 -2.575 H37 Y7M 70 Y7M H38 H38 H 0 1 N N N 11.958 24.039 28.496 -1.150 -0.930 -0.010 H38 Y7M 71 Y7M H39 H39 H 0 1 N N N 10.494 19.674 27.354 2.700 0.630 1.517 H39 Y7M 72 Y7M H40 H40 H 0 1 N N N 4.542 21.935 24.933 6.190 4.348 -1.876 H40 Y7M 73 Y7M H41 H41 H 0 1 N N N 7.799 16.806 29.781 2.321 -2.342 1.109 H41 Y7M 74 Y7M O1 O6 O 0 1 N Y N ? ? ? 5.945 -3.631 -0.041 O1 Y7M 75 Y7M O2 O7 O 0 1 N Y N ? ? ? 5.071 -2.308 -1.941 O2 Y7M 76 Y7M O3 O8 O 0 1 N Y N ? ? ? 6.609 -1.437 -0.431 O3 Y7M 77 Y7M H20 H20 H 0 1 N Y N ? ? ? 7.387 -1.674 -0.953 H20 Y7M 78 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y7M C30 C28 SING N N 1 Y7M C30 C31 SING N N 2 Y7M O18 C14 DOUB N N 3 Y7M C29 C28 SING N N 4 Y7M C29 C24 SING N N 5 Y7M C28 C27 SING N N 6 Y7M C14 N15 SING N N 7 Y7M C14 C13 SING N N 8 Y7M C31 C32 SING N N 9 Y7M C31 C33 SING N N 10 Y7M C32 C24 SING N N 11 Y7M N15 C16 SING N N 12 Y7M C24 C23 SING N N 13 Y7M C24 C25 SING N N 14 Y7M C23 O22 SING N N 15 Y7M C27 C26 SING N N 16 Y7M O01 C02 DOUB N N 17 Y7M C13 C12 SING N N 18 Y7M C13 C17 SING N N 19 Y7M O22 C02 SING N N 20 Y7M C02 N03 SING N N 21 Y7M C33 C26 SING N N 22 Y7M C16 C17 SING N N 23 Y7M C12 C11 SING N N 24 Y7M C25 C26 SING N N 25 Y7M C07 C06 SING N N 26 Y7M N03 C04 SING N N 27 Y7M N10 C11 SING N N 28 Y7M N10 C09 SING N N 29 Y7M C04 C09 SING N N 30 Y7M C04 C05 SING N N 31 Y7M C11 C19 SING N N 32 Y7M C06 C05 SING N N 33 Y7M C06 C08 SING N N 34 Y7M C09 O21 DOUB N N 35 Y7M C19 O20 SING N N 36 Y7M C04 H1 SING N N 37 Y7M C05 H2 SING N N 38 Y7M C05 H3 SING N N 39 Y7M C06 H4 SING N N 40 Y7M C07 H5 SING N N 41 Y7M C07 H6 SING N N 42 Y7M C07 H7 SING N N 43 Y7M C08 H8 SING N N 44 Y7M C08 H9 SING N N 45 Y7M C08 H10 SING N N 46 Y7M C11 H11 SING N N 47 Y7M C12 H12 SING N N 48 Y7M C12 H13 SING N N 49 Y7M C13 H14 SING N N 50 Y7M C16 H15 SING N N 51 Y7M C16 H16 SING N N 52 Y7M C17 H17 SING N N 53 Y7M C17 H18 SING N N 54 Y7M C19 H19 SING N N 55 Y7M C19 S1 SING N N 56 Y7M C23 H21 SING N N 57 Y7M C23 H22 SING N N 58 Y7M C25 H23 SING N N 59 Y7M C25 H24 SING N N 60 Y7M C26 H25 SING N N 61 Y7M C27 H26 SING N N 62 Y7M C27 H27 SING N N 63 Y7M C28 H28 SING N N 64 Y7M C29 H29 SING N N 65 Y7M C29 H30 SING N N 66 Y7M C30 H31 SING N N 67 Y7M C30 H32 SING N N 68 Y7M C31 H33 SING N N 69 Y7M C32 H34 SING N N 70 Y7M C32 H35 SING N N 71 Y7M C33 H36 SING N N 72 Y7M C33 H37 SING N N 73 Y7M N03 H38 SING N N 74 Y7M N10 H39 SING N N 75 Y7M N15 H40 SING N N 76 Y7M O20 H41 SING N N 77 Y7M S1 O1 DOUB N N 78 Y7M S1 O2 DOUB N N 79 Y7M S1 O3 SING N N 80 Y7M O3 H20 SING N N 81 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y7M InChI InChI 1.03 "InChI=1S/C25H41N3O8S/c1-14(2)5-19(22(30)27-20(23(31)37(33,34)35)9-18-3-4-26-21(18)29)28-24(32)36-13-25-10-15-6-16(11-25)8-17(7-15)12-25/h14-20,23,31H,3-13H2,1-2H3,(H,26,29)(H,27,30)(H,28,32)(H,33,34,35)/t15-,16+,17-,18-,19-,20-,23-,25-/m0/s1" Y7M InChIKey InChI 1.03 AFONNBAHWVWJGI-WSGOIKEKSA-N Y7M SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OCC12CC3CC(CC(C3)C1)C2)C(=O)N[C@@H](C[C@@H]4CCNC4=O)[C@@H](O)[S](O)(=O)=O" Y7M SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OCC12CC3CC(CC(C3)C1)C2)C(=O)N[CH](C[CH]4CCNC4=O)[CH](O)[S](O)(=O)=O" Y7M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC23CC4CC(C2)CC(C4)C3" Y7M SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC23CC4CC(C2)CC(C4)C3" # _pdbx_chem_comp_identifier.comp_id Y7M _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[(2~{S})-2-(1-adamantylmethoxycarbonylamino)-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y7M "Create component" 2021-02-09 RCSB Y7M "Modify name" 2021-02-09 RCSB Y7M "Initial release" 2021-02-17 RCSB ##