data_Y7S # _chem_comp.id Y7S _chem_comp.name "(1~{R},3~{S},4~{R})-3-methyl-4-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]cyclopentane-1-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H21 N2 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-09 _chem_comp.pdbx_modified_date 2021-08-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 372.310 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LNM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y7S C11 C1 C 0 1 Y N N -4.610 3.640 -6.328 2.965 -1.852 -0.014 C11 Y7S 1 Y7S C12 C2 C 0 1 Y N N -4.773 2.636 -5.357 1.868 -1.043 0.216 C12 Y7S 2 Y7S C13 C3 C 0 1 Y N N -5.732 1.634 -5.546 0.627 -1.626 0.416 C13 Y7S 3 Y7S C14 C4 C 0 1 N N N -3.882 2.618 -4.089 2.019 0.456 0.248 C14 Y7S 4 Y7S C16 C5 C 0 1 N N N -7.153 2.843 -8.944 1.597 -5.263 0.093 C16 Y7S 5 Y7S C17 C6 C 0 1 N N N -4.434 -2.666 -4.088 -3.270 -0.475 -2.820 C17 Y7S 6 Y7S C18 C7 C 0 1 N N N -7.404 -2.982 -0.358 -5.351 1.267 0.975 C18 Y7S 7 Y7S C01 C8 C 0 1 N N S -5.908 -2.862 -3.637 -3.126 0.726 -1.882 C01 Y7S 8 Y7S C02 C9 C 0 1 N N N -6.280 -3.651 -2.448 -4.514 1.192 -1.388 C02 Y7S 9 Y7S C03 C10 C 0 1 N N N -6.766 -1.776 -3.760 -2.384 0.327 -0.628 C03 Y7S 10 Y7S C05 C11 C 0 1 N N N -7.461 -1.580 -2.465 -2.973 0.815 0.442 C05 Y7S 11 Y7S C06 C12 C 0 1 N N N -5.907 0.473 -4.420 -0.593 -0.779 0.669 C06 Y7S 12 Y7S C07 C13 C 0 1 N N R -7.560 -3.001 -1.743 -4.199 1.614 0.066 C07 Y7S 13 Y7S C08 C14 C 0 1 Y N N -6.506 1.718 -6.721 0.535 -3.014 0.379 C08 Y7S 14 Y7S C09 C15 C 0 1 Y N N -6.301 2.762 -7.652 1.682 -3.759 0.142 C09 Y7S 15 Y7S N04 N1 N 0 1 N N N -6.621 -0.755 -4.863 -1.233 -0.451 -0.607 N04 Y7S 16 Y7S N10 N2 N 0 1 Y N N -5.373 3.677 -7.428 2.842 -3.164 -0.049 N10 Y7S 17 Y7S O15 O1 O 0 1 N N N -7.487 0.771 -6.972 -0.661 -3.631 0.570 O15 Y7S 18 Y7S O19 O2 O 0 1 N N N -6.308 -3.305 0.157 -6.337 0.734 0.523 O19 Y7S 19 Y7S O20 O3 O 0 1 N N N -8.355 -2.663 0.389 -5.281 1.550 2.285 O20 Y7S 20 Y7S O39 O4 O 0 1 N N N -2.952 1.543 -4.261 3.386 0.802 0.015 O39 Y7S 21 Y7S O41 O5 O 0 1 N N N -3.120 0.044 -2.115 3.736 2.985 1.437 O41 Y7S 22 Y7S O42 O6 O 0 1 N N N -1.703 2.077 -2.055 5.468 2.343 -0.433 O42 Y7S 23 Y7S O43 O7 O 0 1 N N N -0.990 0.098 -3.426 3.128 3.094 -1.010 O43 Y7S 24 Y7S P40 P1 P 0 1 N N N -2.166 0.921 -2.922 3.912 2.323 -0.020 P40 Y7S 25 Y7S H1 H1 H 0 1 N N N -3.854 4.397 -6.184 3.934 -1.403 -0.171 H1 Y7S 26 Y7S H2 H2 H 0 1 N N N -3.345 3.573 -3.988 1.395 0.901 -0.527 H2 Y7S 27 Y7S H3 H3 H 0 1 N N N -4.498 2.448 -3.194 1.710 0.832 1.223 H3 Y7S 28 Y7S H4 H4 H 0 1 N N N -6.841 3.716 -9.536 1.765 -5.669 1.090 H4 Y7S 29 Y7S H5 H5 H 0 1 N N N -7.008 1.928 -9.537 0.608 -5.559 -0.259 H5 Y7S 30 Y7S H6 H6 H 0 1 N N N -8.215 2.942 -8.677 2.355 -5.647 -0.590 H6 Y7S 31 Y7S H7 H7 H 0 1 N N N -3.876 -3.601 -3.935 -3.878 -0.193 -3.680 H7 Y7S 32 Y7S H8 H8 H 0 1 N N N -4.410 -2.395 -5.154 -2.284 -0.791 -3.159 H8 Y7S 33 Y7S H9 H9 H 0 1 N N N -3.973 -1.862 -3.495 -3.752 -1.295 -2.288 H9 Y7S 34 Y7S H10 H10 H 0 1 N N N -6.272 -3.519 -4.441 -2.609 1.541 -2.388 H10 Y7S 35 Y7S H11 H11 H 0 1 N N N -6.515 -4.681 -2.753 -4.872 2.040 -1.971 H11 Y7S 36 Y7S H12 H12 H 0 1 N N N -5.439 -3.661 -1.739 -5.233 0.373 -1.410 H12 Y7S 37 Y7S H14 H14 H 0 1 N N N -7.834 -0.643 -2.079 -2.628 0.664 1.454 H14 Y7S 38 Y7S H16 H16 H 0 1 N N N -4.903 0.177 -4.082 -1.294 -1.329 1.297 H16 Y7S 39 Y7S H17 H17 H 0 1 N N N -6.466 0.903 -3.576 -0.298 0.141 1.174 H17 Y7S 40 Y7S H18 H18 H 0 1 N N N -8.472 -3.524 -2.066 -3.986 2.682 0.114 H18 Y7S 41 Y7S H19 H19 H 0 1 N N N -7.533 -0.497 -5.182 -0.853 -0.777 -1.438 H19 Y7S 42 Y7S H21 H21 H 0 1 N N N -7.506 0.139 -6.263 -1.164 -3.775 -0.243 H21 Y7S 43 Y7S H22 H22 H 0 1 N N N -8.078 -2.719 1.296 -6.044 1.309 2.827 H22 Y7S 44 Y7S H23 H23 H 0 1 N N N -2.787 -0.845 -2.088 4.224 2.530 2.138 H23 Y7S 45 Y7S H24 H24 H 0 1 N N N -0.755 2.066 -1.992 5.853 3.230 -0.474 H24 Y7S 46 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y7S C16 C09 SING N N 1 Y7S C09 N10 DOUB Y N 2 Y7S C09 C08 SING Y N 3 Y7S N10 C11 SING Y N 4 Y7S O15 C08 SING N N 5 Y7S C08 C13 DOUB Y N 6 Y7S C11 C12 DOUB Y N 7 Y7S C13 C12 SING Y N 8 Y7S C13 C06 SING N N 9 Y7S C12 C14 SING N N 10 Y7S N04 C06 SING N N 11 Y7S N04 C03 SING N N 12 Y7S O39 C14 SING N N 13 Y7S O39 P40 SING N N 14 Y7S C17 C01 SING N N 15 Y7S C03 C01 SING N N 16 Y7S C03 C05 DOUB N N 17 Y7S C01 C02 SING N N 18 Y7S O43 P40 DOUB N N 19 Y7S P40 O41 SING N N 20 Y7S P40 O42 SING N N 21 Y7S C05 C07 SING N N 22 Y7S C02 C07 SING N N 23 Y7S C07 C18 SING N N 24 Y7S C18 O19 DOUB N N 25 Y7S C18 O20 SING N N 26 Y7S C11 H1 SING N N 27 Y7S C14 H2 SING N N 28 Y7S C14 H3 SING N N 29 Y7S C16 H4 SING N N 30 Y7S C16 H5 SING N N 31 Y7S C16 H6 SING N N 32 Y7S C17 H7 SING N N 33 Y7S C17 H8 SING N N 34 Y7S C17 H9 SING N N 35 Y7S C01 H10 SING N N 36 Y7S C02 H11 SING N N 37 Y7S C02 H12 SING N N 38 Y7S C05 H14 SING N N 39 Y7S C06 H16 SING N N 40 Y7S C06 H17 SING N N 41 Y7S C07 H18 SING N N 42 Y7S N04 H19 SING N N 43 Y7S O15 H21 SING N N 44 Y7S O20 H22 SING N N 45 Y7S O41 H23 SING N N 46 Y7S O42 H24 SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y7S SMILES ACDLabs 12.01 "Oc1c(CNC2=CC(CC2C)C(=O)O)c(cnc1C)COP(=O)(O)O" Y7S InChI InChI 1.03 "InChI=1S/C15H21N2O7P/c1-8-3-10(15(19)20)4-13(8)17-6-12-11(7-24-25(21,22)23)5-16-9(2)14(12)18/h4-5,8,10,17-18H,3,6-7H2,1-2H3,(H,19,20)(H2,21,22,23)/t8-,10+/m0/s1" Y7S InChIKey InChI 1.03 LZIGREAGJMTTOE-WCBMZHEXSA-N Y7S SMILES_CANONICAL CACTVS 3.385 "C[C@H]1C[C@H](C=C1NCc2c(O)c(C)ncc2CO[P](O)(O)=O)C(O)=O" Y7S SMILES CACTVS 3.385 "C[CH]1C[CH](C=C1NCc2c(O)c(C)ncc2CO[P](O)(O)=O)C(O)=O" Y7S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC2=C[C@@H](C[C@@H]2C)C(=O)O)O" Y7S SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC2=CC(CC2C)C(=O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y7S "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,4S)-3-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-4-methylcyclopent-2-ene-1-carboxylic acid" Y7S "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},4~{S})-4-methyl-3-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]cyclopent-2-ene-1-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y7S "Create component" 2021-02-09 RCSB Y7S "Modify value order" 2021-08-17 RCSB Y7S "Initial release" 2021-08-25 RCSB ##