data_Y7U # _chem_comp.id Y7U _chem_comp.name "2',2'-Difluorodeoxyuridine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H10 F2 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "1-[(2~{R},4~{R},5~{R})-3,3-bis(fluoranyl)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]pyrimidine-2,4-dione" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-27 _chem_comp.pdbx_modified_date 2024-11-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 264.183 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y7U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8X6U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y7U N1 N1 N 0 1 N N N N N N 27.678 -30.622 -20.120 -1.024 0.037 0.265 N1 Y7U 1 Y7U C2 C1 C 0 1 N N N N N N 26.335 -30.571 -20.411 -1.303 0.940 -0.724 C2 Y7U 2 Y7U O3 O1 O 0 1 N N N N N N 26.487 -33.414 -23.089 3.384 2.771 0.712 O3 Y7U 3 Y7U C4 C2 C 0 1 N N N N N N 25.894 -29.357 -18.386 -3.622 0.643 -0.251 C4 Y7U 4 Y7U C5 C3 C 0 1 N N R N N N 28.607 -31.393 -20.970 0.369 -0.301 0.567 C5 Y7U 5 Y7U C6 C4 C 0 1 N N N N N N 28.490 -32.887 -20.681 1.027 -1.026 -0.636 C6 Y7U 6 Y7U C7 C5 C 0 1 N N R N N N 29.020 -33.530 -21.960 2.529 -0.723 -0.414 C7 Y7U 7 Y7U C9 C6 C 0 1 N N N N N N 27.552 -32.971 -23.921 3.284 1.664 -0.186 C9 Y7U 8 Y7U C1 C7 C 0 1 N N N N N N 25.442 -29.972 -19.605 -2.587 1.257 -0.998 C1 Y7U 9 Y7U C3 C8 C 0 1 N N N N N N 28.186 -30.067 -18.957 -2.017 -0.539 0.967 C3 Y7U 10 Y7U C8 C9 C 0 1 N N R N N N 28.676 -32.491 -23.032 2.533 0.520 0.497 C8 Y7U 11 Y7U F1 F1 F 0 1 N N N N N N 29.080 -33.309 -19.523 0.782 -2.402 -0.584 F1 Y7U 12 Y7U F2 F2 F 0 1 N N N N N N 27.170 -33.205 -20.523 0.582 -0.487 -1.847 F2 Y7U 13 Y7U N2 N2 N 0 1 N N N N N N 27.252 -29.446 -18.168 -3.306 -0.246 0.712 N2 Y7U 14 Y7U O1 O2 O 0 1 N N N N N N 29.367 -30.091 -18.646 -1.746 -1.335 1.845 O1 Y7U 15 Y7U O2 O3 O 0 1 N N N N N N 28.232 -31.298 -22.333 1.163 0.896 0.714 O2 Y7U 16 Y7U O4 O4 O 0 1 N N N N N N 30.407 -33.741 -21.832 3.170 -1.822 0.235 O4 Y7U 17 Y7U O5 O5 O 0 1 N N N N N N 25.196 -28.779 -17.549 -4.787 0.913 -0.480 O5 Y7U 18 Y7U H2 H1 H 0 1 N N N N N N 25.984 -31.030 -21.323 -0.501 1.398 -1.283 H2 Y7U 19 Y7U H10 H2 H 0 1 N N N N N N 25.769 -33.721 -23.630 3.850 3.535 0.344 H10 Y7U 20 Y7U H5 H3 H 0 1 N N N N N N 29.644 -31.061 -20.812 0.428 -0.917 1.464 H5 Y7U 21 Y7U H6 H4 H 0 1 N N N N N N 28.482 -34.468 -22.161 3.017 -0.501 -1.363 H6 Y7U 22 Y7U H9 H5 H 0 1 N N N N N N 27.206 -32.147 -24.562 2.744 1.970 -1.082 H9 Y7U 23 Y7U H8 H6 H 0 1 N N N N N N 27.904 -33.802 -24.550 4.284 1.328 -0.462 H8 Y7U 24 Y7U H1 H7 H 0 1 N N N N N N 24.395 -29.953 -19.870 -2.822 1.968 -1.776 H1 Y7U 25 Y7U H7 H8 H 0 1 N N N N N N 29.568 -32.277 -23.639 3.006 0.279 1.449 H7 Y7U 26 Y7U HN2 H9 H 0 1 N N N N N N 27.596 -29.007 -17.338 -4.009 -0.670 1.227 HN2 Y7U 27 Y7U H11 H10 H 0 1 N N N N N N 30.741 -34.141 -22.626 3.145 -2.646 -0.270 H11 Y7U 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y7U C1 C2 DOUB N N 1 Y7U C1 C4 SING N N 2 Y7U C2 N1 SING N N 3 Y7U N1 C3 SING N N 4 Y7U N1 C5 SING N N 5 Y7U C3 O1 DOUB N N 6 Y7U C3 N2 SING N N 7 Y7U N2 C4 SING N N 8 Y7U C4 O5 DOUB N N 9 Y7U C5 C6 SING N N 10 Y7U C5 O2 SING N N 11 Y7U C6 C7 SING N N 12 Y7U C6 F1 SING N N 13 Y7U C6 F2 SING N N 14 Y7U C7 C8 SING N N 15 Y7U C7 O4 SING N N 16 Y7U C8 O2 SING N N 17 Y7U C8 C9 SING N N 18 Y7U C9 O3 SING N N 19 Y7U C2 H2 SING N N 20 Y7U O3 H10 SING N N 21 Y7U C5 H5 SING N N 22 Y7U C7 H6 SING N N 23 Y7U C9 H9 SING N N 24 Y7U C9 H8 SING N N 25 Y7U C1 H1 SING N N 26 Y7U C8 H7 SING N N 27 Y7U N2 HN2 SING N N 28 Y7U O4 H11 SING N N 29 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y7U InChI InChI 1.06 "InChI=1S/C9H10F2N2O5/c10-9(11)6(16)4(3-14)18-7(9)13-2-1-5(15)12-8(13)17/h1-2,4,6-7,14,16H,3H2,(H,12,15,17)" Y7U InChIKey InChI 1.06 FIRDBEQIJQERSE-UHFFFAOYSA-N Y7U SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](N2C=CC(=O)NC2=O)C(F)(F)[C@@H]1O" Y7U SMILES CACTVS 3.385 "OC[CH]1O[CH](N2C=CC(=O)NC2=O)C(F)(F)[CH]1O" Y7U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)NC1=O)[C@H]2C([C@@H]([C@H](O2)CO)O)(F)F" Y7U SMILES "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)NC1=O)C2C(C(C(O2)CO)O)(F)F" # _pdbx_chem_comp_identifier.comp_id Y7U _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[(2~{R},4~{R},5~{R})-3,3-bis(fluoranyl)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y7U "Create component" 2023-11-27 PDBJ Y7U "Initial release" 2024-11-27 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id Y7U _pdbx_chem_comp_synonyms.name "1-[(2~{R},4~{R},5~{R})-3,3-bis(fluoranyl)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]pyrimidine-2,4-dione" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #