data_Y7W # _chem_comp.id Y7W _chem_comp.name pirtobrutinib _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H21 F4 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "5-amino-3-{4-[(5-fluoro-2-methoxybenzamido)methyl]phenyl}-1-[(2S)-1,1,1-trifluoropropan-2-yl]-1H-pyrazole-4-carboxamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-11 _chem_comp.pdbx_modified_date 2023-02-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 479.427 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y7W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FLL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y7W N3 N1 N 0 1 N N N -21.311 1.705 1.087 -3.086 -3.269 2.252 N3 Y7W 1 Y7W C4 C1 C 0 1 Y N N -22.945 3.479 1.193 -3.794 -1.524 0.705 C4 Y7W 2 Y7W C5 C2 C 0 1 Y N N -23.945 3.056 0.270 -2.842 -0.557 0.144 C5 Y7W 3 Y7W C6 C3 C 0 1 Y N N -24.187 1.739 -0.344 -1.427 -0.820 -0.211 C6 Y7W 4 Y7W C7 C4 C 0 1 Y N N -24.288 0.588 0.433 -0.852 -0.187 -1.312 C7 Y7W 5 Y7W C8 C5 C 0 1 Y N N -24.553 -0.641 -0.154 0.465 -0.435 -1.637 C8 Y7W 6 Y7W C10 C6 C 0 1 N N N -25.023 -2.095 -2.147 2.655 -1.578 -1.235 C10 Y7W 7 Y7W C13 C7 C 0 1 Y N N -23.874 -3.077 -5.618 5.723 0.300 -0.016 C13 Y7W 8 Y7W C15 C8 C 0 1 Y N N -23.727 -3.902 -7.844 5.986 2.160 1.483 C15 Y7W 9 Y7W C17 C9 C 0 1 Y N N -22.369 -3.816 -7.859 7.360 2.109 1.305 C17 Y7W 10 Y7W C21 C10 C 0 1 N N N -20.500 -2.246 -4.476 9.087 -0.669 -1.139 C21 Y7W 11 Y7W C24 C11 C 0 1 Y N N -24.325 1.621 -1.723 -0.664 -1.698 0.558 C24 Y7W 12 Y7W C28 C12 C 0 1 N N N -25.398 6.830 -0.583 -5.333 2.645 1.349 C28 Y7W 13 Y7W O1 O1 O 0 1 N N N -21.115 3.311 2.646 -3.723 -3.792 0.189 O1 Y7W 14 Y7W C2 C13 C 0 1 N N N -21.751 2.800 1.713 -3.534 -2.930 1.027 C2 Y7W 15 Y7W C9 C14 C 0 1 Y N N -24.712 -0.755 -1.523 1.216 -1.311 -0.874 C9 Y7W 16 Y7W N11 N2 N 0 1 N N N -24.238 -2.343 -3.349 3.518 -0.618 -0.541 N11 Y7W 17 Y7W C12 C15 C 0 1 N N N -24.800 -2.767 -4.485 4.854 -0.667 -0.714 C12 Y7W 18 Y7W C14 C16 C 0 1 Y N N -24.505 -3.559 -6.769 5.166 1.262 0.829 C14 Y7W 19 Y7W F16 F1 F 0 1 N N N -24.352 -4.374 -8.949 5.447 3.091 2.301 F16 Y7W 20 Y7W C18 C17 C 0 1 Y N N -21.733 -3.343 -6.726 7.921 1.166 0.467 C18 Y7W 21 Y7W C19 C18 C 0 1 Y N N -22.478 -2.976 -5.616 7.113 0.253 -0.193 C19 Y7W 22 Y7W O20 O2 O 0 1 N N N -21.909 -2.475 -4.477 7.665 -0.682 -1.007 O20 Y7W 23 Y7W O22 O3 O 0 1 N N N -26.026 -2.917 -4.609 5.342 -1.506 -1.445 O22 Y7W 24 Y7W C23 C19 C 0 1 Y N N -24.582 0.390 -2.301 0.653 -1.939 0.223 C23 Y7W 25 Y7W N25 N3 N 0 1 Y N N -24.836 4.021 0.066 -3.479 0.583 0.016 N25 Y7W 26 Y7W N26 N4 N 0 1 Y N N -24.437 5.071 0.854 -4.796 0.432 0.458 N26 Y7W 27 Y7W C27 C20 C 0 1 N N S -25.177 6.296 0.825 -5.809 1.489 0.467 C27 Y7W 28 Y7W C29 C21 C 0 1 N N N -26.481 6.145 1.574 -6.031 1.995 -0.960 C29 Y7W 29 Y7W F30 F2 F 0 1 N N N -26.276 5.594 2.774 -6.999 3.005 -0.951 F30 Y7W 30 Y7W F31 F3 F 0 1 N N N -27.069 7.324 1.784 -4.831 2.504 -1.467 F31 Y7W 31 Y7W F32 F4 F 0 1 N N N -27.360 5.367 0.926 -6.467 0.938 -1.766 F32 Y7W 32 Y7W C33 C22 C 0 1 Y N N -23.321 4.783 1.553 -4.992 -0.835 0.874 C33 Y7W 33 Y7W N34 N5 N 0 1 N N N -22.667 5.673 2.363 -6.166 -1.354 1.381 N34 Y7W 34 Y7W H1 H1 H 0 1 N N N -20.451 1.280 1.369 -2.935 -2.582 2.920 H1 Y7W 35 Y7W H2 H2 H 0 1 N N N -21.842 1.311 0.337 -2.917 -4.200 2.467 H2 Y7W 36 Y7W H3 H3 H 0 1 N N N -24.159 0.652 1.503 -1.438 0.497 -1.908 H3 Y7W 37 Y7W H4 H4 H 0 1 N N N -24.636 -1.521 0.467 0.911 0.055 -2.490 H4 Y7W 38 Y7W H5 H5 H 0 1 N N N -26.091 -2.123 -2.410 2.923 -2.591 -0.934 H5 Y7W 39 Y7W H6 H6 H 0 1 N N N -24.805 -2.885 -1.414 2.785 -1.472 -2.312 H6 Y7W 40 Y7W H7 H7 H 0 1 N N N -21.804 -4.109 -8.731 7.995 2.815 1.820 H7 Y7W 41 Y7W H8 H8 H 0 1 N N N -20.194 -1.846 -3.498 9.406 0.293 -1.539 H8 Y7W 42 Y7W H9 H9 H 0 1 N N N -19.974 -3.194 -4.665 9.544 -0.825 -0.162 H9 Y7W 43 Y7W H10 H10 H 0 1 N N N -20.246 -1.522 -5.264 9.397 -1.465 -1.816 H10 Y7W 44 Y7W H11 H11 H 0 1 N N N -24.231 2.497 -2.348 -1.102 -2.188 1.415 H11 Y7W 45 Y7W H12 H12 H 0 1 N N N -25.970 7.768 -0.534 -4.397 3.042 0.954 H12 Y7W 46 Y7W H13 H13 H 0 1 N N N -24.425 7.018 -1.061 -6.087 3.432 1.356 H13 Y7W 47 Y7W H14 H14 H 0 1 N N N -25.958 6.089 -1.172 -5.174 2.285 2.366 H14 Y7W 48 Y7W H15 H15 H 0 1 N N N -23.250 -2.192 -3.323 3.128 0.052 0.042 H15 Y7W 49 Y7W H16 H16 H 0 1 N N N -25.580 -3.659 -6.810 4.096 1.305 0.970 H16 Y7W 50 Y7W H17 H17 H 0 1 N N N -20.656 -3.260 -6.706 8.992 1.132 0.333 H17 Y7W 51 Y7W H18 H18 H 0 1 N N N -24.683 0.318 -3.374 1.245 -2.618 0.818 H18 Y7W 52 Y7W H19 H19 H 0 1 N N N -24.589 7.055 1.361 -6.745 1.093 0.862 H19 Y7W 53 Y7W H20 H20 H 0 1 N N N -21.870 5.229 2.772 -6.206 -2.282 1.658 H20 Y7W 54 Y7W H21 H21 H 0 1 N N N -22.369 6.459 1.822 -6.952 -0.790 1.459 H21 Y7W 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y7W F16 C15 SING N N 1 Y7W C17 C15 DOUB Y N 2 Y7W C17 C18 SING Y N 3 Y7W C15 C14 SING Y N 4 Y7W C14 C13 DOUB Y N 5 Y7W C18 C19 DOUB Y N 6 Y7W C13 C19 SING Y N 7 Y7W C13 C12 SING N N 8 Y7W C19 O20 SING N N 9 Y7W O22 C12 DOUB N N 10 Y7W C12 N11 SING N N 11 Y7W O20 C21 SING N N 12 Y7W N11 C10 SING N N 13 Y7W C23 C24 DOUB Y N 14 Y7W C23 C9 SING Y N 15 Y7W C10 C9 SING N N 16 Y7W C24 C6 SING Y N 17 Y7W C9 C8 DOUB Y N 18 Y7W C28 C27 SING N N 19 Y7W C6 C5 SING N N 20 Y7W C6 C7 DOUB Y N 21 Y7W C8 C7 SING Y N 22 Y7W N25 C5 DOUB Y N 23 Y7W N25 N26 SING Y N 24 Y7W C5 C4 SING Y N 25 Y7W C27 N26 SING N N 26 Y7W C27 C29 SING N N 27 Y7W N26 C33 SING Y N 28 Y7W F32 C29 SING N N 29 Y7W N3 C2 SING N N 30 Y7W C4 C33 DOUB Y N 31 Y7W C4 C2 SING N N 32 Y7W C33 N34 SING N N 33 Y7W C29 F31 SING N N 34 Y7W C29 F30 SING N N 35 Y7W C2 O1 DOUB N N 36 Y7W N3 H1 SING N N 37 Y7W N3 H2 SING N N 38 Y7W C7 H3 SING N N 39 Y7W C8 H4 SING N N 40 Y7W C10 H5 SING N N 41 Y7W C10 H6 SING N N 42 Y7W C17 H7 SING N N 43 Y7W C21 H8 SING N N 44 Y7W C21 H9 SING N N 45 Y7W C21 H10 SING N N 46 Y7W C24 H11 SING N N 47 Y7W C28 H12 SING N N 48 Y7W C28 H13 SING N N 49 Y7W C28 H14 SING N N 50 Y7W N11 H15 SING N N 51 Y7W C14 H16 SING N N 52 Y7W C18 H17 SING N N 53 Y7W C23 H18 SING N N 54 Y7W C27 H19 SING N N 55 Y7W N34 H20 SING N N 56 Y7W N34 H21 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y7W SMILES ACDLabs 12.01 "FC(F)(F)C(C)n1nc(c2ccc(CNC(=O)c3cc(F)ccc3OC)cc2)c(c1N)C(N)=O" Y7W InChI InChI 1.06 "InChI=1S/C22H21F4N5O3/c1-11(22(24,25)26)31-19(27)17(20(28)32)18(30-31)13-5-3-12(4-6-13)10-29-21(33)15-9-14(23)7-8-16(15)34-2/h3-9,11H,10,27H2,1-2H3,(H2,28,32)(H,29,33)/t11-/m0/s1" Y7W InChIKey InChI 1.06 FWZAWAUZXYCBKZ-NSHDSACASA-N Y7W SMILES_CANONICAL CACTVS 3.385 "COc1ccc(F)cc1C(=O)NCc2ccc(cc2)c3nn([C@@H](C)C(F)(F)F)c(N)c3C(N)=O" Y7W SMILES CACTVS 3.385 "COc1ccc(F)cc1C(=O)NCc2ccc(cc2)c3nn([CH](C)C(F)(F)F)c(N)c3C(N)=O" Y7W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C(F)(F)F)n1c(c(c(n1)c2ccc(cc2)CNC(=O)c3cc(ccc3OC)F)C(=O)N)N" Y7W SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(F)(F)F)n1c(c(c(n1)c2ccc(cc2)CNC(=O)c3cc(ccc3OC)F)C(=O)N)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y7W "SYSTEMATIC NAME" ACDLabs 12.01 "5-amino-3-{4-[(5-fluoro-2-methoxybenzamido)methyl]phenyl}-1-[(2S)-1,1,1-trifluoropropan-2-yl]-1H-pyrazole-4-carboxamide" Y7W "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-azanyl-3-[4-[[(5-fluoranyl-2-methoxy-phenyl)carbonylamino]methyl]phenyl]-1-[(2~{S})-1,1,1-tris(fluoranyl)propan-2-yl]pyrazole-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y7W "Create component" 2023-01-11 RCSB Y7W "Initial release" 2023-03-01 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id Y7W _pdbx_chem_comp_synonyms.name "5-amino-3-{4-[(5-fluoro-2-methoxybenzamido)methyl]phenyl}-1-[(2S)-1,1,1-trifluoropropan-2-yl]-1H-pyrazole-4-carboxamide" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type IUPAC #