data_Y8C # _chem_comp.id Y8C _chem_comp.name "N~2~-(3-chlorophenyl)-N-[(3R)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-yl]glycinamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H21 Cl N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-11 _chem_comp.pdbx_modified_date 2023-02-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 384.863 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y8C _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FLG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y8C N1 N1 N 0 1 Y N N 18.114 -4.688 0.090 6.635 -2.145 0.383 N1 Y8C 1 Y8C N3 N2 N 0 1 Y N N 17.359 -4.912 -2.195 8.009 -0.105 0.763 N3 Y8C 2 Y8C C4 C1 C 0 1 Y N N 19.137 -5.026 0.871 5.417 -2.575 0.136 C4 Y8C 3 Y8C C5 C2 C 0 1 Y N N 19.094 -6.050 -3.059 6.385 1.396 0.570 C5 Y8C 4 Y8C C6 C3 C 0 1 Y N N 17.886 -5.480 -3.331 7.698 1.229 0.794 C6 Y8C 5 Y8C C7 C4 C 0 1 N N N 21.672 -7.669 -2.226 2.221 -0.349 -0.292 C7 Y8C 6 Y8C C8 C5 C 0 1 N N R 22.914 -7.226 -3.015 1.025 0.606 -0.294 C8 Y8C 7 Y8C C10 C6 C 0 1 N N N 23.898 -6.393 -0.842 2.547 2.416 -1.090 C10 Y8C 8 Y8C C13 C7 C 0 1 N N N 22.925 -8.929 -6.423 -2.651 -0.449 -0.462 C13 Y8C 9 Y8C C15 C8 C 0 1 Y N N 23.304 -6.716 -8.231 -6.183 0.407 0.477 C15 Y8C 10 Y8C C17 C9 C 0 1 Y N N 22.778 -5.653 -10.338 -7.634 -1.311 -0.349 C17 Y8C 11 Y8C C1 C10 C 0 1 Y N N 20.390 -6.112 -0.743 4.534 -0.443 0.117 C1 Y8C 12 Y8C C11 C11 C 0 1 N N N 22.666 -6.888 -0.132 3.699 1.409 -1.065 C11 Y8C 13 Y8C C12 C12 C 0 1 N N N 22.428 -8.038 -5.301 -1.392 0.322 -0.163 C12 Y8C 14 Y8C C14 C13 C 0 1 Y N N 22.375 -7.711 -8.512 -5.089 -0.265 -0.053 C14 Y8C 15 Y8C C16 C14 C 0 1 Y N N 23.482 -5.703 -9.154 -7.452 -0.118 0.330 C16 Y8C 16 Y8C C18 C15 C 0 1 Y N N 21.861 -6.640 -10.602 -6.548 -1.979 -0.883 C18 Y8C 17 Y8C C19 C16 C 0 1 Y N N 21.657 -7.670 -9.703 -5.276 -1.461 -0.734 C19 Y8C 18 Y8C C2 C17 C 0 1 Y N N 19.349 -5.824 -1.676 5.816 0.063 0.381 C2 Y8C 19 Y8C C3 C18 C 0 1 Y N N 18.244 -5.110 -1.173 6.884 -0.843 0.513 C3 Y8C 20 Y8C C9 C19 C 0 1 N N N 24.148 -7.200 -2.117 1.235 1.677 -1.368 C9 Y8C 21 Y8C N2 N3 N 0 1 Y N N 20.238 -5.709 0.523 4.386 -1.760 0.004 N2 Y8C 22 Y8C N4 N4 N 0 1 N N N 21.511 -6.834 -1.034 3.451 0.407 -0.021 N4 Y8C 23 Y8C N5 N5 N 0 1 N N N 23.139 -8.082 -4.175 -0.200 -0.144 -0.584 N5 Y8C 24 Y8C N6 N6 N 0 1 N N N 22.166 -8.731 -7.633 -3.804 0.261 0.098 N6 Y8C 25 Y8C O1 O1 O 0 1 N N N 21.429 -7.340 -5.436 -1.451 1.363 0.456 O1 Y8C 26 Y8C CL1 CL1 CL 0 0 N N N 24.641 -4.453 -8.805 -8.820 0.717 0.997 CL1 Y8C 27 Y8C H1 H1 H 0 1 N N N 16.481 -4.437 -2.128 8.897 -0.473 0.897 H1 Y8C 28 Y8C H2 H2 H 0 1 N N N 19.074 -4.715 1.903 5.253 -3.637 0.037 H2 Y8C 29 Y8C H3 H3 H 0 1 N N N 19.733 -6.571 -3.756 5.851 2.334 0.536 H3 Y8C 30 Y8C H4 H4 H 0 1 N N N 17.411 -5.475 -4.301 8.404 2.027 0.973 H4 Y8C 31 Y8C H5 H5 H 0 1 N N N 20.781 -7.569 -2.863 2.081 -1.104 0.482 H5 Y8C 32 Y8C H6 H6 H 0 1 N N N 21.790 -8.719 -1.922 2.299 -0.835 -1.264 H6 Y8C 33 Y8C H7 H7 H 0 1 N N N 22.735 -6.199 -3.367 0.937 1.082 0.683 H7 Y8C 34 Y8C H8 H8 H 0 1 N N N 24.766 -6.496 -0.174 2.483 2.921 -0.126 H8 Y8C 35 Y8C H9 H9 H 0 1 N N N 23.762 -5.334 -1.106 2.724 3.152 -1.875 H9 Y8C 36 Y8C H10 H10 H 0 1 N N N 22.833 -9.980 -6.112 -2.772 -0.544 -1.541 H10 Y8C 37 Y8C H11 H11 H 0 1 N N N 23.982 -8.697 -6.622 -2.584 -1.441 -0.015 H11 Y8C 38 Y8C H12 H12 H 0 1 N N N 23.873 -6.734 -7.313 -6.041 1.337 1.007 H12 Y8C 39 Y8C H13 H13 H 0 1 N N N 22.945 -4.853 -11.044 -8.627 -1.720 -0.463 H13 Y8C 40 Y8C H14 H14 H 0 1 N N N 22.472 -6.254 0.746 3.770 0.915 -2.034 H14 Y8C 41 Y8C H15 H15 H 0 1 N N N 22.826 -7.927 0.193 4.632 1.930 -0.853 H15 Y8C 42 Y8C H16 H16 H 0 1 N N N 21.294 -6.611 -11.521 -6.693 -2.909 -1.412 H16 Y8C 43 Y8C H17 H17 H 0 1 N N N 20.938 -8.445 -9.926 -4.428 -1.984 -1.151 H17 Y8C 44 Y8C H18 H18 H 0 1 N N N 24.411 -8.232 -1.841 1.283 1.205 -2.349 H18 Y8C 45 Y8C H19 H19 H 0 1 N N N 24.983 -6.745 -2.670 0.406 2.385 -1.344 H19 Y8C 46 Y8C H20 H20 H 0 1 N N N 23.881 -8.750 -4.121 -0.152 -0.977 -1.080 H20 Y8C 47 Y8C H21 H21 H 0 1 N N N 21.213 -8.646 -7.343 -3.674 1.096 0.573 H21 Y8C 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y8C C18 C17 DOUB Y N 1 Y8C C18 C19 SING Y N 2 Y8C C17 C16 SING Y N 3 Y8C C19 C14 DOUB Y N 4 Y8C C16 CL1 SING N N 5 Y8C C16 C15 DOUB Y N 6 Y8C C14 C15 SING Y N 7 Y8C C14 N6 SING N N 8 Y8C N6 C13 SING N N 9 Y8C C13 C12 SING N N 10 Y8C O1 C12 DOUB N N 11 Y8C C12 N5 SING N N 12 Y8C N5 C8 SING N N 13 Y8C C6 C5 DOUB Y N 14 Y8C C6 N3 SING Y N 15 Y8C C5 C2 SING Y N 16 Y8C C8 C7 SING N N 17 Y8C C8 C9 SING N N 18 Y8C C7 N4 SING N N 19 Y8C N3 C3 SING Y N 20 Y8C C9 C10 SING N N 21 Y8C C2 C3 DOUB Y N 22 Y8C C2 C1 SING Y N 23 Y8C C3 N1 SING Y N 24 Y8C N4 C1 SING N N 25 Y8C N4 C11 SING N N 26 Y8C C10 C11 SING N N 27 Y8C C1 N2 DOUB Y N 28 Y8C N1 C4 DOUB Y N 29 Y8C N2 C4 SING Y N 30 Y8C N3 H1 SING N N 31 Y8C C4 H2 SING N N 32 Y8C C5 H3 SING N N 33 Y8C C6 H4 SING N N 34 Y8C C7 H5 SING N N 35 Y8C C7 H6 SING N N 36 Y8C C8 H7 SING N N 37 Y8C C10 H8 SING N N 38 Y8C C10 H9 SING N N 39 Y8C C13 H10 SING N N 40 Y8C C13 H11 SING N N 41 Y8C C15 H12 SING N N 42 Y8C C17 H13 SING N N 43 Y8C C11 H14 SING N N 44 Y8C C11 H15 SING N N 45 Y8C C18 H16 SING N N 46 Y8C C19 H17 SING N N 47 Y8C C9 H18 SING N N 48 Y8C C9 H19 SING N N 49 Y8C N5 H20 SING N N 50 Y8C N6 H21 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y8C SMILES ACDLabs 12.01 "Clc1cccc(c1)NCC(=O)NC1CCCN(C1)c1ncnc2[NH]ccc12" Y8C InChI InChI 1.06 "InChI=1S/C19H21ClN6O/c20-13-3-1-4-14(9-13)22-10-17(27)25-15-5-2-8-26(11-15)19-16-6-7-21-18(16)23-12-24-19/h1,3-4,6-7,9,12,15,22H,2,5,8,10-11H2,(H,25,27)(H,21,23,24)/t15-/m1/s1" Y8C InChIKey InChI 1.06 SPSNKQVUYDXOGY-OAHLLOKOSA-N Y8C SMILES_CANONICAL CACTVS 3.385 "Clc1cccc(NCC(=O)N[C@@H]2CCCN(C2)c3ncnc4[nH]ccc34)c1" Y8C SMILES CACTVS 3.385 "Clc1cccc(NCC(=O)N[CH]2CCCN(C2)c3ncnc4[nH]ccc34)c1" Y8C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)Cl)NCC(=O)N[C@@H]2CCCN(C2)c3c4cc[nH]c4ncn3" Y8C SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)Cl)NCC(=O)NC2CCCN(C2)c3c4cc[nH]c4ncn3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y8C "SYSTEMATIC NAME" ACDLabs 12.01 "N~2~-(3-chlorophenyl)-N-[(3R)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-yl]glycinamide" Y8C "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(3-chlorophenyl)amino]-~{N}-[(3~{R})-1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-yl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y8C "Create component" 2023-01-11 RCSB Y8C "Initial release" 2023-03-01 RCSB #