data_Y8F # _chem_comp.id Y8F _chem_comp.name "[(2~{S})-1-dodecanoyloxy-3-phosphonooxy-propan-2-yl] tridecanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H55 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-27 _chem_comp.pdbx_modified_date 2024-11-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 550.705 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y8F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8X6X _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y8F C1 C1 C 0 1 N N S N N N 168.957 166.895 182.908 0.329 2.613 -1.577 C1 Y8F 1 Y8F C2 C2 C 0 1 N N N N N N 169.751 165.731 182.354 0.070 3.538 -0.386 C2 Y8F 2 Y8F C3 C3 C 0 1 N N N N N N 168.570 167.744 185.139 2.405 1.519 -1.159 C3 Y8F 3 Y8F C4 C4 C 0 1 N N N N N N 169.167 167.792 186.513 3.235 0.344 -0.711 C4 Y8F 4 Y8F C5 C5 C 0 1 N N N N N N 168.334 167.149 187.604 4.720 0.689 -0.842 C5 Y8F 5 Y8F C6 C6 C 0 1 N N N N N N 167.057 167.913 187.888 5.563 -0.504 -0.387 C6 Y8F 6 Y8F P1 P1 P 0 1 N N N N N N 169.755 163.107 182.199 -1.275 3.565 1.923 P1 Y8F 7 Y8F O1 O1 O 0 1 N N N N N N 169.265 164.487 182.889 -0.791 2.882 0.547 O1 Y8F 8 Y8F O2 O2 O 0 1 N N N N N N 171.271 163.104 182.302 -2.122 2.499 2.782 O2 Y8F 9 Y8F O3 O3 O 0 1 N N N N N N 169.260 163.182 180.763 -0.092 3.996 2.701 O3 Y8F 10 Y8F O4 O4 O 0 1 N N N N N N 169.101 161.989 182.995 -2.196 4.843 1.594 O4 Y8F 11 Y8F O5 O5 O 0 1 N N N N N N 169.329 167.011 184.312 1.065 1.443 -1.131 O5 Y8F 12 Y8F O6 O6 O 0 1 N N N N N N 167.547 168.279 184.797 2.945 2.529 -1.544 O6 Y8F 13 Y8F O7 O7 O 0 1 N N N N N N 169.568 167.863 180.800 -1.831 1.573 -1.151 O7 Y8F 14 Y8F O8 O8 O 0 1 N N N N N N 167.378 167.798 180.317 -3.405 1.247 -2.668 O8 Y8F 15 Y8F C10 C7 C 0 1 N N N N N N 167.192 167.404 192.518 10.218 -2.200 0.261 C10 Y8F 16 Y8F C11 C8 C 0 1 N N N N N N 166.717 167.695 193.936 11.703 -1.855 0.131 C11 Y8F 17 Y8F C12 C9 C 0 1 N N N N N N 167.768 168.282 194.868 12.546 -3.047 0.586 C12 Y8F 18 Y8F C13 C10 C 0 1 N N N N N N 167.233 168.682 196.237 14.031 -2.702 0.455 C13 Y8F 19 Y8F C14 C11 C 0 1 N N N N N N 168.257 169.306 197.171 14.874 -3.895 0.910 C14 Y8F 20 Y8F C15 C12 C 0 1 N N N N N N 167.693 169.748 198.504 16.359 -3.550 0.779 C15 Y8F 21 Y8F C16 C13 C 0 1 N N N N N N 169.275 168.186 182.177 -1.006 2.176 -2.183 C16 Y8F 22 Y8F C17 C14 C 0 1 N N N N N N 168.524 167.614 179.998 -3.044 1.133 -1.521 C17 Y8F 23 Y8F C18 C15 C 0 1 N N N N N N 168.998 167.093 178.675 -3.957 0.497 -0.504 C18 Y8F 24 Y8F C19 C16 C 0 1 N N N N N N 168.683 167.967 177.480 -5.267 0.087 -1.181 C19 Y8F 25 Y8F C20 C17 C 0 1 N N N N N N 169.491 167.456 176.299 -6.193 -0.559 -0.149 C20 Y8F 26 Y8F C21 C18 C 0 1 N N N N N N 169.408 168.204 174.977 -7.503 -0.969 -0.826 C21 Y8F 27 Y8F C22 C19 C 0 1 N N N N N N 170.450 167.701 173.989 -8.429 -1.616 0.206 C22 Y8F 28 Y8F C23 C20 C 0 1 N N N N N N 170.507 168.435 172.657 -9.739 -2.025 -0.470 C23 Y8F 29 Y8F C24 C21 C 0 1 N N N N N N 170.718 169.936 172.790 -10.666 -2.672 0.562 C24 Y8F 30 Y8F C25 C22 C 0 1 N N N N N N 170.996 170.641 171.470 -11.975 -3.081 -0.115 C25 Y8F 31 Y8F C26 C23 C 0 1 N N N N N N 170.004 170.328 170.359 -12.902 -3.728 0.917 C26 Y8F 32 Y8F C27 C24 C 0 1 N N N N N N 170.266 171.111 169.086 -14.212 -4.137 0.241 C27 Y8F 33 Y8F C28 C25 C 0 1 N N N N N N 171.697 171.000 168.614 -15.138 -4.784 1.273 C28 Y8F 34 Y8F C7 C26 C 0 1 N N N N N N 166.726 168.036 189.369 7.048 -0.159 -0.518 C7 Y8F 35 Y8F C8 C27 C 0 1 N N N N N N 166.453 166.745 190.126 7.891 -1.352 -0.063 C8 Y8F 36 Y8F C9 C28 C 0 1 N N N N N N 166.073 166.960 191.586 9.375 -1.007 -0.194 C9 Y8F 37 Y8F H1 H1 H 0 1 N N N N N N 167.882 166.680 182.817 0.913 3.144 -2.329 H1 Y8F 38 Y8F H2 H2 H 0 1 N N N N N N 170.810 165.853 182.627 1.016 3.778 0.100 H2 Y8F 39 Y8F H3 H3 H 0 1 N N N N N N 169.654 165.716 181.258 -0.403 4.456 -0.734 H3 Y8F 40 Y8F H4 H4 H 0 1 N N N N N N 170.139 167.277 186.480 3.006 0.113 0.329 H4 Y8F 41 Y8F H5 H5 H 0 1 N N N N N N 169.320 168.848 186.780 3.007 -0.521 -1.334 H5 Y8F 42 Y8F H6 H6 H 0 1 N N N N N N 168.071 166.128 187.291 4.949 0.920 -1.882 H6 Y8F 43 Y8F H7 H7 H 0 1 N N N N N N 168.932 167.108 188.526 4.948 1.554 -0.219 H7 Y8F 44 Y8F H8 H8 H 0 1 N N N N N N 167.160 168.926 187.471 5.334 -0.735 0.654 H8 Y8F 45 Y8F H9 H9 H 0 1 N N N N N N 166.225 167.394 187.389 5.334 -1.369 -1.010 H9 Y8F 46 Y8F H10 H10 H 0 1 N N N N N N 171.648 163.151 181.431 -2.446 2.842 3.626 H10 Y8F 47 Y8F H11 H11 H 0 1 N N N N N N 168.484 161.524 182.441 -2.991 4.634 1.084 H11 Y8F 48 Y8F H12 H12 H 0 1 N N N N N N 167.948 166.606 192.560 9.990 -3.065 -0.362 H12 Y8F 49 Y8F H13 H13 H 0 1 N N N N N N 167.646 168.318 192.108 9.989 -2.431 1.302 H13 Y8F 50 Y8F H14 H14 H 0 1 N N N N N N 165.881 168.408 193.875 11.932 -1.623 -0.910 H14 Y8F 51 Y8F H15 H15 H 0 1 N N N N N N 166.362 166.751 194.376 11.931 -0.990 0.753 H15 Y8F 52 Y8F H16 H16 H 0 1 N N N N N N 168.559 167.532 195.012 12.317 -3.279 1.626 H16 Y8F 53 Y8F H17 H17 H 0 1 N N N N N N 168.194 169.176 194.389 12.318 -3.912 -0.038 H17 Y8F 54 Y8F H18 H18 H 0 1 N N N N N N 166.421 169.409 196.087 14.260 -2.471 -0.586 H18 Y8F 55 Y8F H19 H19 H 0 1 N N N N N N 166.833 167.780 196.723 14.259 -1.837 1.077 H19 Y8F 56 Y8F H20 H20 H 0 1 N N N N N N 169.048 168.565 197.360 14.645 -4.126 1.950 H20 Y8F 57 Y8F H21 H21 H 0 1 N N N N N N 168.689 170.185 196.671 14.646 -4.760 0.287 H21 Y8F 58 Y8F H22 H22 H 0 1 N N N N N N 168.496 170.186 199.115 16.588 -3.319 -0.262 H22 Y8F 59 Y8F H23 H23 H 0 1 N N N N N N 166.907 170.500 198.338 16.587 -2.685 1.402 H23 Y8F 60 Y8F H24 H24 H 0 1 N N N N N N 167.266 168.880 199.027 16.959 -4.400 1.103 H24 Y8F 61 Y8F H25 H25 H 0 1 N N N N N N 170.147 168.671 182.640 -1.519 3.044 -2.598 H25 Y8F 62 Y8F H26 H26 H 0 1 N N N N N N 168.410 168.864 182.225 -0.825 1.448 -2.974 H26 Y8F 63 Y8F H27 H27 H 0 1 N N N N N N 168.530 166.111 178.510 -3.474 -0.385 -0.084 H27 Y8F 64 Y8F H28 H28 H 0 1 N N N N N N 170.090 166.974 178.729 -4.167 1.210 0.292 H28 Y8F 65 Y8F H29 H29 H 0 1 N N N N N N 168.958 169.010 177.697 -5.750 0.969 -1.601 H29 Y8F 66 Y8F H30 H30 H 0 1 N N N N N N 167.609 167.911 177.250 -5.056 -0.627 -1.978 H30 Y8F 67 Y8F H31 H31 H 0 1 N N N N N N 169.166 166.423 176.107 -5.710 -1.441 0.271 H31 Y8F 68 Y8F H32 H32 H 0 1 N N N N N N 170.547 167.457 176.605 -6.403 0.154 0.648 H32 Y8F 69 Y8F H33 H33 H 0 1 N N N N N N 169.577 169.275 175.161 -7.986 -0.087 -1.246 H33 Y8F 70 Y8F H34 H34 H 0 1 N N N N N N 168.406 168.059 174.546 -7.293 -1.683 -1.622 H34 Y8F 71 Y8F H35 H35 H 0 1 N N N N N N 170.236 166.642 173.782 -7.946 -2.498 0.627 H35 Y8F 72 Y8F H36 H36 H 0 1 N N N N N N 171.437 167.789 174.466 -8.640 -0.902 1.003 H36 Y8F 73 Y8F H37 H37 H 0 1 N N N N N N 169.559 168.264 172.126 -10.222 -1.143 -0.890 H37 Y8F 74 Y8F H38 H38 H 0 1 N N N N N N 171.337 168.019 172.067 -9.529 -2.739 -1.267 H38 Y8F 75 Y8F H39 H39 H 0 1 N N N N N N 171.573 170.107 173.460 -10.182 -3.554 0.982 H39 Y8F 76 Y8F H40 H40 H 0 1 N N N N N N 169.812 170.375 173.232 -10.876 -1.958 1.359 H40 Y8F 77 Y8F H41 H41 H 0 1 N N N N N N 171.998 170.344 171.128 -12.459 -2.199 -0.535 H41 Y8F 78 Y8F H42 H42 H 0 1 N N N N N N 170.977 171.726 171.651 -11.765 -3.795 -0.911 H42 Y8F 79 Y8F H43 H43 H 0 1 N N N N N N 168.992 170.569 170.716 -12.419 -4.610 1.337 H43 Y8F 80 Y8F H44 H44 H 0 1 N N N N N N 170.065 169.254 170.128 -13.112 -3.014 1.714 H44 Y8F 81 Y8F H45 H45 H 0 1 N N N N N N 170.039 172.171 169.272 -14.695 -3.256 -0.179 H45 Y8F 82 Y8F H46 H46 H 0 1 N N N N N N 169.604 170.728 168.295 -14.001 -4.851 -0.556 H46 Y8F 83 Y8F H47 H47 H 0 1 N N N N N N 171.826 171.586 167.692 -16.071 -5.076 0.791 H47 Y8F 84 Y8F H48 H48 H 0 1 N N N N N N 172.371 171.388 169.392 -14.655 -5.666 1.693 H48 Y8F 85 Y8F H49 H49 H 0 1 N N N N N N 171.936 169.945 168.415 -15.348 -4.070 2.069 H49 Y8F 86 Y8F H50 H50 H 0 1 N N N N N N 167.576 168.534 189.859 7.277 0.072 -1.558 H50 Y8F 87 Y8F H51 H51 H 0 1 N N N N N N 165.830 168.668 189.457 7.276 0.706 0.105 H51 Y8F 88 Y8F H52 H52 H 0 1 N N N N N N 165.627 166.217 189.626 7.661 -1.583 0.978 H52 Y8F 89 Y8F H53 H53 H 0 1 N N N N N N 167.360 166.123 190.091 7.662 -2.217 -0.686 H53 Y8F 90 Y8F H54 H54 H 0 1 N N N N N N 165.286 167.728 191.618 9.604 -0.142 0.429 H54 Y8F 91 Y8F H55 H55 H 0 1 N N N N N N 165.673 166.010 191.971 9.604 -0.776 -1.234 H55 Y8F 92 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y8F C28 C27 SING N N 1 Y8F C27 C26 SING N N 2 Y8F C26 C25 SING N N 3 Y8F C25 C24 SING N N 4 Y8F C23 C24 SING N N 5 Y8F C23 C22 SING N N 6 Y8F C22 C21 SING N N 7 Y8F C21 C20 SING N N 8 Y8F C20 C19 SING N N 9 Y8F C19 C18 SING N N 10 Y8F C18 C17 SING N N 11 Y8F C17 O8 DOUB N N 12 Y8F C17 O7 SING N N 13 Y8F O3 P1 DOUB N N 14 Y8F O7 C16 SING N N 15 Y8F C16 C1 SING N N 16 Y8F P1 O2 SING N N 17 Y8F P1 O1 SING N N 18 Y8F P1 O4 SING N N 19 Y8F C2 O1 SING N N 20 Y8F C2 C1 SING N N 21 Y8F C1 O5 SING N N 22 Y8F O5 C3 SING N N 23 Y8F O6 C3 DOUB N N 24 Y8F C3 C4 SING N N 25 Y8F C4 C5 SING N N 26 Y8F C5 C6 SING N N 27 Y8F C6 C7 SING N N 28 Y8F C7 C8 SING N N 29 Y8F C8 C9 SING N N 30 Y8F C9 C10 SING N N 31 Y8F C10 C11 SING N N 32 Y8F C11 C12 SING N N 33 Y8F C12 C13 SING N N 34 Y8F C13 C14 SING N N 35 Y8F C14 C15 SING N N 36 Y8F C1 H1 SING N N 37 Y8F C2 H2 SING N N 38 Y8F C2 H3 SING N N 39 Y8F C4 H4 SING N N 40 Y8F C4 H5 SING N N 41 Y8F C5 H6 SING N N 42 Y8F C5 H7 SING N N 43 Y8F C6 H8 SING N N 44 Y8F C6 H9 SING N N 45 Y8F O2 H10 SING N N 46 Y8F O4 H11 SING N N 47 Y8F C10 H12 SING N N 48 Y8F C10 H13 SING N N 49 Y8F C11 H14 SING N N 50 Y8F C11 H15 SING N N 51 Y8F C12 H16 SING N N 52 Y8F C12 H17 SING N N 53 Y8F C13 H18 SING N N 54 Y8F C13 H19 SING N N 55 Y8F C14 H20 SING N N 56 Y8F C14 H21 SING N N 57 Y8F C15 H22 SING N N 58 Y8F C15 H23 SING N N 59 Y8F C15 H24 SING N N 60 Y8F C16 H25 SING N N 61 Y8F C16 H26 SING N N 62 Y8F C18 H27 SING N N 63 Y8F C18 H28 SING N N 64 Y8F C19 H29 SING N N 65 Y8F C19 H30 SING N N 66 Y8F C20 H31 SING N N 67 Y8F C20 H32 SING N N 68 Y8F C21 H33 SING N N 69 Y8F C21 H34 SING N N 70 Y8F C22 H35 SING N N 71 Y8F C22 H36 SING N N 72 Y8F C23 H37 SING N N 73 Y8F C23 H38 SING N N 74 Y8F C24 H39 SING N N 75 Y8F C24 H40 SING N N 76 Y8F C25 H41 SING N N 77 Y8F C25 H42 SING N N 78 Y8F C26 H43 SING N N 79 Y8F C26 H44 SING N N 80 Y8F C27 H45 SING N N 81 Y8F C27 H46 SING N N 82 Y8F C28 H47 SING N N 83 Y8F C28 H48 SING N N 84 Y8F C28 H49 SING N N 85 Y8F C7 H50 SING N N 86 Y8F C7 H51 SING N N 87 Y8F C8 H52 SING N N 88 Y8F C8 H53 SING N N 89 Y8F C9 H54 SING N N 90 Y8F C9 H55 SING N N 91 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y8F InChI InChI 1.06 "InChI=1S/C28H55O8P/c1-3-5-7-9-11-13-15-17-19-21-23-28(30)36-26(25-35-37(31,32)33)24-34-27(29)22-20-18-16-14-12-10-8-6-4-2/h26H,3-25H2,1-2H3,(H2,31,32,33)/t26-/m0/s1" Y8F InChIKey InChI 1.06 HSXSRFZJKUWGTG-SANMLTNESA-N Y8F SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCC(=O)O[C@@H](COC(=O)CCCCCCCCCCC)CO[P](O)(O)=O" Y8F SMILES CACTVS 3.385 "CCCCCCCCCCCCC(=O)O[CH](COC(=O)CCCCCCCCCCC)CO[P](O)(O)=O" Y8F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCC(=O)O[C@@H](COC(=O)CCCCCCCCCCC)COP(=O)(O)O" Y8F SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCC(=O)OC(COC(=O)CCCCCCCCCCC)COP(=O)(O)O" # _pdbx_chem_comp_identifier.comp_id Y8F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{S})-1-dodecanoyloxy-3-phosphonooxy-propan-2-yl] tridecanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y8F "Create component" 2023-11-27 PDBJ Y8F "Initial release" 2024-11-27 RCSB #