data_Y8O # _chem_comp.id Y8O _chem_comp.name "(1R,2S,5S)-3-[N-(difluoroacetyl)-3-methyl-L-valyl]-N-{(1Z,2S)-1-imino-3-[(3S)-2-oxopiperidin-3-yl]propan-2-yl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H37 F2 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-12 _chem_comp.pdbx_modified_date 2023-12-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 497.578 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y8O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FTC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y8O C10 C1 C 0 1 N N N N N N 21.438 18.474 23.726 -1.782 0.038 -2.774 C10 Y8O 1 Y8O C02 C2 C 0 1 N N N N N N 19.175 17.779 27.403 1.546 -1.212 -0.414 C02 Y8O 2 Y8O C05 C3 C 0 1 N N N N N N 19.283 16.683 24.444 -1.566 0.124 0.087 C05 Y8O 3 Y8O C06 C4 C 0 1 N N S N N N 20.112 16.445 23.177 -2.912 0.316 -0.563 C06 Y8O 4 Y8O C07 C5 C 0 1 N N N N N N 20.641 17.774 22.599 -2.724 0.923 -1.955 C07 Y8O 5 Y8O C08 C6 C 0 1 N N N N N N 21.633 17.422 21.447 -2.122 2.323 -1.823 C08 Y8O 6 Y8O C09 C7 C 0 1 N N N N N N 19.531 18.681 22.032 -4.079 1.014 -2.659 C09 Y8O 7 Y8O N04 N1 N 0 1 N N N N N N 19.815 16.119 25.658 -0.881 -1.021 -0.106 N04 Y8O 8 Y8O N11 N2 N 0 1 N N N N N N 19.225 15.705 22.336 -3.726 1.216 0.257 N11 Y8O 9 Y8O C03 C8 C 0 1 N N S N N N 19.049 16.328 27.058 0.391 -1.437 0.528 C03 Y8O 10 Y8O C12 C9 C 0 1 N N N N N N 19.714 14.450 21.758 -5.071 1.157 0.190 C12 Y8O 11 Y8O C13 C10 C 0 1 N N N N N N 18.790 13.661 20.843 -5.908 2.084 1.033 C13 Y8O 12 Y8O C18 C11 C 0 1 N N N N N N 20.980 15.429 25.805 -1.233 -2.151 -0.997 C18 Y8O 13 Y8O C19 C12 C 0 1 N N S N N N 20.895 14.809 27.266 -0.855 -3.414 -0.193 C19 Y8O 14 Y8O C20 C13 C 0 1 N N R N N N 19.624 15.393 27.898 0.212 -2.944 0.809 C20 Y8O 15 Y8O C21 C14 C 0 1 N N N N N N 19.883 13.864 27.925 -1.145 -3.425 1.309 C21 Y8O 16 Y8O C22 C15 C 0 1 N N N N N N 19.062 13.087 26.860 -2.113 -2.370 1.849 C22 Y8O 17 Y8O C23 C16 C 0 1 N N N N N N 20.215 13.269 29.294 -1.198 -4.785 2.007 C23 Y8O 18 Y8O C25 C17 C 0 1 N N S N N N 17.954 19.812 28.347 3.928 -0.943 -0.851 C25 Y8O 19 Y8O C26 C18 C 0 1 N N N N N N 16.965 20.647 27.516 5.100 -0.329 -0.083 C26 Y8O 20 Y8O C27 C19 C 0 1 N N S N N N 17.456 20.884 26.042 4.713 1.067 0.407 C27 Y8O 21 Y8O C28 C20 C 0 1 N N N N N N 18.679 21.448 25.913 4.481 1.983 -0.797 C28 Y8O 22 Y8O C29 C21 C 0 1 N N N N N N 19.040 21.856 24.534 4.367 3.427 -0.293 C29 Y8O 23 Y8O C30 C22 C 0 1 N N N N N N 18.138 22.814 23.974 5.728 3.865 0.249 C30 Y8O 24 Y8O C32 C23 C 0 1 N N N N N N 16.262 21.441 25.159 5.817 1.620 1.263 C32 Y8O 25 Y8O C34 C24 C 0 1 N N N N N N 17.480 19.826 29.820 4.354 -2.260 -1.448 C34 Y8O 26 Y8O F14 F1 F 0 1 N N N N N N 17.598 14.328 20.801 -7.261 1.759 0.880 F14 Y8O 27 Y8O F15 F2 F 0 1 N N N N N N 19.317 13.667 19.569 -5.546 1.947 2.378 F15 Y8O 28 Y8O N24 N3 N 0 1 N N N N N N 17.970 18.404 27.930 2.806 -1.162 0.064 N24 Y8O 29 Y8O N31 N4 N 0 1 N N N N N N 16.634 22.413 24.099 6.242 2.880 1.193 N31 Y8O 30 Y8O N35 N5 N 0 1 N N N N N N 17.648 20.896 30.477 3.744 -3.337 -1.122 N35 Y8O 31 Y8O O01 O1 O 0 1 N N N N N N 20.180 18.388 27.220 1.343 -1.076 -1.602 O01 Y8O 32 Y8O O16 O2 O 0 1 N N N N N N 20.816 14.076 22.000 -5.607 0.358 -0.548 O16 Y8O 33 Y8O O17 O3 O 0 1 N N N N N N 18.257 17.287 24.482 -1.099 0.999 0.785 O17 Y8O 34 Y8O O33 O4 O 0 1 N N N N N N 15.136 21.061 25.316 6.349 0.879 2.062 O33 Y8O 35 Y8O H103 H1 H 0 0 N N N N N N 20.758 18.732 24.551 -2.158 -0.985 -2.781 H103 Y8O 36 Y8O H101 H2 H 0 0 N N N N N N 22.222 17.797 24.096 -1.729 0.412 -3.796 H101 Y8O 37 Y8O H102 H3 H 0 0 N N N N N N 21.901 19.391 23.332 -0.787 0.056 -2.329 H102 Y8O 38 Y8O H061 H4 H 0 0 N N N N N N 20.977 15.819 23.443 -3.413 -0.648 -0.651 H061 Y8O 39 Y8O H082 H5 H 0 0 N N N N N N 22.432 16.774 21.836 -1.156 2.258 -1.322 H082 Y8O 40 Y8O H081 H6 H 0 0 N N N N N N 21.093 16.897 20.646 -1.988 2.755 -2.815 H081 Y8O 41 Y8O H083 H7 H 0 0 N N N N N N 22.073 18.347 21.047 -2.793 2.953 -1.240 H083 Y8O 42 Y8O H092 H8 H 0 0 N N N N N N 18.822 18.939 22.833 -4.750 1.644 -2.075 H092 Y8O 43 Y8O H091 H9 H 0 0 N N N N N N 19.980 19.601 21.630 -3.945 1.446 -3.650 H091 Y8O 44 Y8O H093 H10 H 0 0 N N N N N N 18.999 18.151 21.228 -4.508 0.016 -2.752 H093 Y8O 45 Y8O H111 H11 H 0 0 N N N N N N 18.299 16.033 22.148 -3.297 1.856 0.847 H111 Y8O 46 Y8O H031 H12 H 0 0 N N N N N N 17.987 16.094 26.892 0.549 -0.891 1.458 H031 Y8O 47 Y8O H131 H13 H 0 0 N N N N N N 18.674 12.638 21.230 -5.743 3.113 0.715 H131 Y8O 48 Y8O H181 H14 H 0 0 N N N N N N 21.059 14.634 25.049 -2.301 -2.145 -1.215 H181 Y8O 49 Y8O H182 H15 H 0 0 N N N N N N 21.845 16.103 25.719 -0.655 -2.102 -1.920 H182 Y8O 50 Y8O H191 H16 H 0 0 N N N N N N 21.806 14.974 27.859 -0.757 -4.351 -0.740 H191 Y8O 51 Y8O H201 H17 H 0 0 N N N N N N 19.865 15.821 28.882 1.108 -3.531 1.011 H201 Y8O 52 Y8O H223 H18 H 0 0 N N N N N N 18.347 12.419 27.363 -3.032 -2.855 2.178 H223 Y8O 53 Y8O H222 H19 H 0 0 N N N N N N 18.514 13.801 26.227 -1.654 -1.852 2.691 H222 Y8O 54 Y8O H221 H20 H 0 0 N N N N N N 19.743 12.491 26.235 -2.343 -1.651 1.062 H221 Y8O 55 Y8O H231 H21 H 0 0 N N N N N N 20.801 13.995 29.877 -0.861 -5.560 1.319 H231 Y8O 56 Y8O H233 H22 H 0 0 N N N N N N 19.282 13.037 29.829 -0.548 -4.770 2.883 H233 Y8O 57 Y8O H232 H23 H 0 0 N N N N N N 20.801 12.347 29.161 -2.221 -4.995 2.318 H232 Y8O 58 Y8O H251 H24 H 0 0 N N N N N N 18.961 20.250 28.278 3.621 -0.266 -1.648 H251 Y8O 59 Y8O H261 H25 H 0 0 N N N N N N 16.833 21.624 28.004 5.345 -0.960 0.771 H261 Y8O 60 Y8O H262 H26 H 0 0 N N N N N N 16.000 20.120 27.484 5.967 -0.256 -0.741 H262 Y8O 61 Y8O H271 H27 H 0 0 N N N N N N 17.578 19.860 25.660 3.797 1.003 0.995 H271 Y8O 62 Y8O H281 H28 H 0 0 N N N N N N 19.428 20.721 26.261 5.320 1.901 -1.487 H281 Y8O 63 Y8O H282 H29 H 0 0 N N N N N N 18.711 22.342 26.553 3.559 1.697 -1.303 H282 Y8O 64 Y8O H292 H30 H 0 0 N N N N N N 19.041 20.961 23.894 4.074 4.079 -1.115 H292 Y8O 65 Y8O H291 H31 H 0 0 N N N N N N 20.049 22.295 24.552 3.621 3.480 0.500 H291 Y8O 66 Y8O H301 H32 H 0 0 N N N N N N 18.377 22.933 22.907 6.430 3.971 -0.578 H301 Y8O 67 Y8O H302 H33 H 0 0 N N N N N N 18.285 23.773 24.492 5.622 4.826 0.753 H302 Y8O 68 Y8O H1 H34 H 0 1 N N N N N N 17.024 18.957 30.271 5.173 -2.295 -2.151 H1 Y8O 69 Y8O H241 H35 H 0 0 N N N N N N 17.134 17.862 28.010 2.969 -1.271 1.014 H241 Y8O 70 Y8O H311 H36 H 0 0 N N N N N N 15.944 22.798 23.486 6.939 3.160 1.808 H311 Y8O 71 Y8O H351 H37 H 0 0 N N N N N N 17.314 20.815 31.416 4.018 -4.185 -1.506 H351 Y8O 72 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y8O F15 C13 SING N N 1 Y8O F14 C13 SING N N 2 Y8O C13 C12 SING N N 3 Y8O C08 C07 SING N N 4 Y8O C12 O16 DOUB N N 5 Y8O C12 N11 SING N N 6 Y8O C09 C07 SING N N 7 Y8O N11 C06 SING N N 8 Y8O C07 C06 SING N N 9 Y8O C07 C10 SING N N 10 Y8O C06 C05 SING N N 11 Y8O C30 N31 SING N N 12 Y8O C30 C29 SING N N 13 Y8O N31 C32 SING N N 14 Y8O C05 O17 DOUB N N 15 Y8O C05 N04 SING N N 16 Y8O C29 C28 SING N N 17 Y8O C32 O33 DOUB N N 18 Y8O C32 C27 SING N N 19 Y8O N04 C18 SING N N 20 Y8O N04 C03 SING N N 21 Y8O C18 C19 SING N N 22 Y8O C28 C27 SING N N 23 Y8O C27 C26 SING N N 24 Y8O C22 C21 SING N N 25 Y8O C03 C02 SING N N 26 Y8O C03 C20 SING N N 27 Y8O O01 C02 DOUB N N 28 Y8O C19 C20 SING N N 29 Y8O C19 C21 SING N N 30 Y8O C02 N24 SING N N 31 Y8O C26 C25 SING N N 32 Y8O C20 C21 SING N N 33 Y8O C21 C23 SING N N 34 Y8O N24 C25 SING N N 35 Y8O C25 C34 SING N N 36 Y8O C34 N35 DOUB N N 37 Y8O C10 H103 SING N N 38 Y8O C10 H101 SING N N 39 Y8O C10 H102 SING N N 40 Y8O C06 H061 SING N N 41 Y8O C08 H082 SING N N 42 Y8O C08 H081 SING N N 43 Y8O C08 H083 SING N N 44 Y8O C09 H092 SING N N 45 Y8O C09 H091 SING N N 46 Y8O C09 H093 SING N N 47 Y8O N11 H111 SING N N 48 Y8O C03 H031 SING N N 49 Y8O C13 H131 SING N N 50 Y8O C18 H181 SING N N 51 Y8O C18 H182 SING N N 52 Y8O C19 H191 SING N N 53 Y8O C20 H201 SING N N 54 Y8O C22 H223 SING N N 55 Y8O C22 H222 SING N N 56 Y8O C22 H221 SING N N 57 Y8O C23 H231 SING N N 58 Y8O C23 H233 SING N N 59 Y8O C23 H232 SING N N 60 Y8O C25 H251 SING N N 61 Y8O C26 H261 SING N N 62 Y8O C26 H262 SING N N 63 Y8O C27 H271 SING N N 64 Y8O C28 H281 SING N N 65 Y8O C28 H282 SING N N 66 Y8O C29 H292 SING N N 67 Y8O C29 H291 SING N N 68 Y8O C30 H301 SING N N 69 Y8O C30 H302 SING N N 70 Y8O C34 H1 SING N N 71 Y8O N24 H241 SING N N 72 Y8O N31 H311 SING N N 73 Y8O N35 H351 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y8O SMILES ACDLabs 12.01 "CC1(C)C2C(C(=O)NC(C=N)CC3CCCNC3=O)N(CC21)C(=O)C(NC(=O)C(F)F)C(C)(C)C" Y8O InChI InChI 1.06 "InChI=1S/C24H37F2N5O4/c1-23(2,3)17(30-21(34)18(25)26)22(35)31-11-14-15(24(14,4)5)16(31)20(33)29-13(10-27)9-12-7-6-8-28-19(12)32/h10,12-18,27H,6-9,11H2,1-5H3,(H,28,32)(H,29,33)(H,30,34)/b27-10-/t12-,13-,14-,15-,16-,17+/m0/s1" Y8O InChIKey InChI 1.06 MSAKMAGHNICQTP-NJLGGNEPSA-N Y8O SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)[C@H](NC(=O)C(F)F)C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](C[C@@H]3CCCNC3=O)C=N)C2(C)C" Y8O SMILES CACTVS 3.385 "CC(C)(C)[CH](NC(=O)C(F)F)C(=O)N1C[CH]2[CH]([CH]1C(=O)N[CH](C[CH]3CCCNC3=O)C=N)C2(C)C" Y8O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C\[C@H](C[C@@H]1CCCNC1=O)NC(=O)[C@@H]2[C@@H]3[C@@H](C3(C)C)CN2C(=O)[C@H](C(C)(C)C)NC(=O)C(F)F" Y8O SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)C(C(C)(C)C)NC(=O)C(F)F)C(=O)NC(CC3CCCNC3=O)C=N)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y8O "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S,5S)-3-[N-(difluoroacetyl)-3-methyl-L-valyl]-N-{(1Z,2S)-1-imino-3-[(3S)-2-oxopiperidin-3-yl]propan-2-yl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" Y8O "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-~{N}-[(2~{S})-1-azanylidene-3-[(3~{S})-2-oxidanylidenepiperidin-3-yl]propan-2-yl]-3-[(2~{S})-2-[2,2-bis(fluoranyl)ethanoylamino]-3,3-dimethyl-butanoyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y8O "Create component" 2023-01-12 RCSB Y8O "Initial release" 2023-12-06 RCSB #