data_Y8S # _chem_comp.id Y8S _chem_comp.name "(1R,2S)-2-((S)-2-(((((1R,3S,5S)-bicyclo[3.3.1]non-6-en-3-yl)methoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H39 N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-10 _chem_comp.pdbx_modified_date 2021-02-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 529.647 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y8S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LKW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y8S N11 N1 N 0 1 N N N 10.291 20.257 27.254 2.540 -0.337 -0.141 N11 Y8S 1 Y8S C12 C1 C 0 1 N N N 10.777 21.511 27.694 1.269 0.105 -0.057 C12 Y8S 2 Y8S C14 C2 C 0 1 N N N 13.258 21.789 28.161 0.341 -1.010 -2.068 C14 Y8S 3 Y8S N18 N2 N 0 1 N N N 12.070 23.456 26.814 -1.132 -0.050 -0.368 N18 Y8S 4 Y8S C19 C3 C 0 1 N N N 11.158 23.912 25.950 -2.278 -0.753 -0.267 C19 Y8S 5 Y8S C21 C4 C 0 1 N N N 9.965 25.795 25.020 -4.640 -0.933 0.021 C21 Y8S 6 Y8S C22 C5 C 0 1 N N S 10.402 27.027 24.204 -5.861 -0.035 0.234 C22 Y8S 7 Y8S C23 C6 C 0 1 N N N 9.300 27.631 23.300 -7.129 -0.886 0.214 C23 Y8S 8 Y8S C24 C7 C 0 1 N N R 8.429 28.704 23.963 -8.360 -0.039 0.498 C24 Y8S 9 Y8S C25 C8 C 0 1 N N N 8.385 28.524 25.479 -8.216 0.711 1.823 C25 Y8S 10 Y8S C26 C9 C 0 1 N N S 9.787 28.786 25.978 -6.966 1.595 1.746 C26 Y8S 11 Y8S C27 C10 C 0 1 N N N 10.868 28.148 25.104 -5.743 0.676 1.586 C27 Y8S 12 Y8S C02 C11 C 0 1 N N N 6.698 20.953 24.720 3.512 -2.155 1.599 C02 Y8S 13 Y8S C04 C12 C 0 1 N N N 5.665 22.580 26.161 5.517 -3.327 1.541 C04 Y8S 14 Y8S C05 C13 C 0 1 N N N 6.846 21.955 26.929 5.835 -1.982 2.231 C05 Y8S 15 Y8S C06 C14 C 0 1 N N S 7.608 21.037 25.948 4.598 -1.134 1.855 C06 Y8S 16 Y8S C07 C15 C 0 1 N N N 7.928 19.665 26.560 4.873 -0.316 0.591 C07 Y8S 17 Y8S C08 C16 C 0 1 N N S 8.990 19.720 27.723 3.647 0.536 0.258 C08 Y8S 18 Y8S C09 C17 C 0 1 N N R 9.172 18.286 28.233 3.985 1.489 -0.890 C09 Y8S 19 Y8S C13 C18 C 0 1 N N S 12.149 22.026 27.148 0.139 -0.748 -0.574 C13 Y8S 20 Y8S C15 C19 C 0 1 N N N 14.602 22.318 27.709 -0.736 -1.976 -2.566 C15 Y8S 21 Y8S C16 C20 C 0 1 N N N 15.677 22.137 28.801 -0.611 -2.142 -4.082 C16 Y8S 22 Y8S C17 C21 C 0 1 N N N 15.066 21.641 26.425 -0.554 -3.336 -1.887 C17 Y8S 23 Y8S C28 C22 C 0 1 N N N 9.898 30.250 25.893 -7.056 2.472 0.525 C28 Y8S 24 Y8S C29 C23 C 0 1 N N N 9.569 30.847 24.756 -7.785 2.184 -0.504 C29 Y8S 25 Y8S C30 C24 C 0 1 N N N 8.929 30.130 23.597 -8.639 0.949 -0.626 C30 Y8S 26 Y8S N03 N3 N 0 1 N N N 5.631 21.840 24.909 4.054 -3.374 1.433 N03 Y8S 27 Y8S O01 O1 O 0 1 N N N 6.839 20.268 23.749 2.325 -1.911 1.556 O01 Y8S 28 Y8S O10 O2 O 0 1 N N N 9.914 18.412 29.397 4.506 0.743 -1.991 O10 Y8S 29 Y8S O20 O3 O 0 1 N N N 10.941 25.264 25.919 -3.447 -0.112 -0.078 O20 Y8S 30 Y8S O31 O4 O 0 1 N N N 10.541 23.174 25.221 -2.256 -1.965 -0.347 O31 Y8S 31 Y8S O32 O5 O 0 1 N N N 10.139 22.202 28.447 1.035 1.188 0.435 O32 Y8S 32 Y8S H1 H1 H 0 1 N N N 10.838 19.720 26.612 2.721 -1.234 -0.463 H1 Y8S 33 Y8S H2 H2 H 0 1 N N N 12.984 22.288 29.102 0.267 -0.071 -2.615 H2 Y8S 34 Y8S H3 H3 H 0 1 N N N 13.348 20.706 28.333 1.326 -1.449 -2.230 H3 Y8S 35 Y8S H4 H4 H 0 1 N N N 12.708 24.097 27.240 -1.150 0.918 -0.304 H4 Y8S 36 Y8S H5 H5 H 0 1 N N N 9.081 26.078 25.611 -4.542 -1.617 0.864 H5 Y8S 37 Y8S H6 H6 H 0 1 N N N 9.692 25.000 24.310 -4.765 -1.505 -0.898 H6 Y8S 38 Y8S H7 H7 H 0 1 N N N 11.242 26.728 23.560 -5.909 0.707 -0.563 H7 Y8S 39 Y8S H8 H8 H 0 1 N N N 8.642 26.813 22.972 -7.233 -1.350 -0.767 H8 Y8S 40 Y8S H9 H9 H 0 1 N N N 9.788 28.082 22.424 -7.049 -1.666 0.971 H9 Y8S 41 Y8S H10 H10 H 0 1 N N N 7.405 28.598 23.576 -9.220 -0.704 0.575 H10 Y8S 42 Y8S H11 H11 H 0 1 N N N 7.681 29.241 25.927 -9.096 1.332 1.990 H11 Y8S 43 Y8S H12 H12 H 0 1 N N N 8.076 27.499 25.732 -8.110 -0.004 2.639 H12 Y8S 44 Y8S H13 H13 H 0 1 N N N 9.892 28.444 27.018 -6.872 2.203 2.646 H13 Y8S 45 Y8S H14 H14 H 0 1 N N N 11.647 27.747 25.768 -5.729 -0.061 2.389 H14 Y8S 46 Y8S H15 H15 H 0 1 N N N 11.298 28.936 24.468 -4.829 1.269 1.613 H15 Y8S 47 Y8S H16 H16 H 0 1 N N N 5.840 23.651 25.978 5.970 -3.359 0.550 H16 Y8S 48 Y8S H17 H17 H 0 1 N N N 6.471 21.366 27.779 5.910 -2.105 3.312 H17 Y8S 49 Y8S H18 H18 H 0 1 N N N 7.515 22.747 27.298 6.747 -1.543 1.827 H18 Y8S 50 Y8S H19 H19 H 0 1 N N N 8.550 21.528 25.662 4.318 -0.478 2.679 H19 Y8S 51 Y8S H20 H20 H 0 1 N N N 6.997 19.238 26.961 5.732 0.333 0.759 H20 Y8S 52 Y8S H21 H21 H 0 1 N N N 8.318 19.013 25.765 5.083 -0.991 -0.239 H21 Y8S 53 Y8S H22 H22 H 0 1 N N N 8.594 20.348 28.535 3.356 1.113 1.136 H22 Y8S 54 Y8S S1 S1 S 0 1 N Y N 9.685 17.684 27.513 5.224 2.691 -0.332 S1 Y8S 55 Y8S H24 H24 H 0 1 N N N 8.170 17.917 28.497 3.083 2.016 -1.202 H24 Y8S 56 Y8S H25 H25 H 0 1 N N N 12.384 21.457 26.236 0.124 -1.696 -0.037 H25 Y8S 57 Y8S H26 H26 H 0 1 N N N 14.500 23.395 27.510 -1.721 -1.578 -2.323 H26 Y8S 58 Y8S H27 H27 H 0 1 N N N 15.344 22.625 29.729 0.374 -2.540 -4.324 H27 Y8S 59 Y8S H28 H28 H 0 1 N N N 15.833 21.064 28.987 -1.378 -2.830 -4.436 H28 Y8S 60 Y8S H29 H29 H 0 1 N N N 16.620 22.592 28.466 -0.741 -1.173 -4.565 H29 Y8S 61 Y8S H30 H30 H 0 1 N N N 16.043 22.049 26.127 -0.643 -3.218 -0.808 H30 Y8S 62 Y8S H31 H31 H 0 1 N N N 15.157 20.558 26.594 -1.321 -4.024 -2.242 H31 Y8S 63 Y8S H32 H32 H 0 1 N N N 14.332 21.827 25.627 0.431 -3.734 -2.130 H32 Y8S 64 Y8S H33 H33 H 0 1 N N N 10.240 30.827 26.739 -6.483 3.388 0.507 H33 Y8S 65 Y8S H34 H34 H 0 1 N N N 9.771 31.903 24.656 -7.766 2.869 -1.339 H34 Y8S 66 Y8S H35 H35 H 0 1 N N N 9.668 30.045 22.787 -8.450 0.464 -1.583 H35 Y8S 67 Y8S H36 H36 H 0 1 N N N 8.071 30.723 23.249 -9.686 1.252 -0.582 H36 Y8S 68 Y8S H37 H37 H 0 1 N N N 10.066 17.552 29.771 3.895 0.080 -2.341 H37 Y8S 69 Y8S O1 O6 O 0 1 N Y N ? ? ? 6.394 2.025 0.124 O1 Y8S 70 Y8S O2 O7 O 0 1 N Y N ? ? ? 5.308 3.779 -1.243 O2 Y8S 71 Y8S O3 O8 O 0 1 N Y N ? ? ? 4.624 3.300 0.926 O3 Y8S 72 Y8S H23 H23 H 0 1 N N N 4.725 22.452 26.717 5.878 -4.157 2.148 H23 Y8S 73 Y8S H38 H38 H 0 1 N N N 4.901 21.956 24.235 3.544 -4.181 1.263 H38 Y8S 74 Y8S H39 H39 H 0 1 N Y N ? ? ? 5.182 3.971 1.343 H39 Y8S 75 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y8S C23 C24 SING N N 1 Y8S C23 C22 SING N N 2 Y8S C30 C24 SING N N 3 Y8S C30 C29 SING N N 4 Y8S O01 C02 DOUB N N 5 Y8S C24 C25 SING N N 6 Y8S C22 C21 SING N N 7 Y8S C22 C27 SING N N 8 Y8S C02 N03 SING N N 9 Y8S C02 C06 SING N N 10 Y8S C29 C28 DOUB N N 11 Y8S N03 C04 SING N N 12 Y8S C21 O20 SING N N 13 Y8S C27 C26 SING N N 14 Y8S O31 C19 DOUB N N 15 Y8S C25 C26 SING N N 16 Y8S C28 C26 SING N N 17 Y8S O20 C19 SING N N 18 Y8S C06 C07 SING N N 19 Y8S C06 C05 SING N N 20 Y8S C19 N18 SING N N 21 Y8S C04 C05 SING N N 22 Y8S C17 C15 SING N N 23 Y8S C07 C08 SING N N 24 Y8S N18 C13 SING N N 25 Y8S C13 C12 SING N N 26 Y8S C13 C14 SING N N 27 Y8S N11 C12 SING N N 28 Y8S N11 C08 SING N N 29 Y8S C12 O32 DOUB N N 30 Y8S C15 C14 SING N N 31 Y8S C15 C16 SING N N 32 Y8S C08 C09 SING N N 33 Y8S C09 O10 SING N N 34 Y8S N11 H1 SING N N 35 Y8S C14 H2 SING N N 36 Y8S C14 H3 SING N N 37 Y8S N18 H4 SING N N 38 Y8S C21 H5 SING N N 39 Y8S C21 H6 SING N N 40 Y8S C22 H7 SING N N 41 Y8S C23 H8 SING N N 42 Y8S C23 H9 SING N N 43 Y8S C24 H10 SING N N 44 Y8S C25 H11 SING N N 45 Y8S C25 H12 SING N N 46 Y8S C26 H13 SING N N 47 Y8S C27 H14 SING N N 48 Y8S C27 H15 SING N N 49 Y8S C04 H16 SING N N 50 Y8S C05 H17 SING N N 51 Y8S C05 H18 SING N N 52 Y8S C06 H19 SING N N 53 Y8S C07 H20 SING N N 54 Y8S C07 H21 SING N N 55 Y8S C08 H22 SING N N 56 Y8S C09 S1 SING N N 57 Y8S C09 H24 SING N N 58 Y8S C13 H25 SING N N 59 Y8S C15 H26 SING N N 60 Y8S C16 H27 SING N N 61 Y8S C16 H28 SING N N 62 Y8S C16 H29 SING N N 63 Y8S C17 H30 SING N N 64 Y8S C17 H31 SING N N 65 Y8S C17 H32 SING N N 66 Y8S C28 H33 SING N N 67 Y8S C29 H34 SING N N 68 Y8S C30 H35 SING N N 69 Y8S C30 H36 SING N N 70 Y8S O10 H37 SING N N 71 Y8S S1 O1 DOUB N N 72 Y8S S1 O2 DOUB N N 73 Y8S S1 O3 SING N N 74 Y8S C04 H23 SING N N 75 Y8S N03 H38 SING N N 76 Y8S O3 H39 SING N N 77 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y8S InChI InChI 1.03 "InChI=1S/C24H39N3O8S/c1-14(2)8-19(27-24(31)35-13-17-10-15-4-3-5-16(9-15)11-17)22(29)26-20(23(30)36(32,33)34)12-18-6-7-25-21(18)28/h3-4,14-20,23,30H,5-13H2,1-2H3,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t15-,16+,17+,18-,19-,20-,23+/m0/s1" Y8S InChIKey InChI 1.03 ZIWRGXZFSGDQST-REFFYEJJSA-N Y8S SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@H]1C[C@@H]2CC=C[C@H](C1)C2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)[S](O)(=O)=O" Y8S SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1C[CH]2CC=C[CH](C1)C2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O" Y8S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@H]2C[C@@H]3CC=C[C@@H](C3)C2" Y8S SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CC3CC=CC(C3)C2" # _pdbx_chem_comp_identifier.comp_id Y8S _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[(2~{S})-2-[[(1~{R},3~{S},5~{S})-3-bicyclo[3.3.1]non-6-enyl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y8S "Create component" 2021-02-10 RCSB Y8S "Initial release" 2021-02-17 RCSB ##