data_Y8U # _chem_comp.id Y8U _chem_comp.name "tert-butyl (5S,8M,12aR)-8-(4-chloro-2-fluorophenyl)-6,12-dioxo-3,4,6,11,12,12a-hexahydropyrazino[2,1-c][1,4]benzodiazepine-2(1H)-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H23 Cl F N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-12 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 459.898 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y8U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G54 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y8U C01 C1 C 0 1 Y N N N N N -9.802 2.466 45.701 -5.676 -0.754 0.016 C01 Y8U 1 Y8U C02 C2 C 0 1 Y N N N N N -9.160 1.269 45.414 -6.838 -0.011 -0.029 C02 Y8U 2 Y8U C04 C3 C 0 1 Y N N N N N -9.646 1.533 43.055 -5.574 2.008 0.273 C04 Y8U 3 Y8U C05 C4 C 0 1 Y N N N N N -10.278 2.729 43.367 -4.404 1.273 0.320 C05 Y8U 4 Y8U C06 C5 C 0 1 Y N N N N N -10.378 3.236 44.681 -4.450 -0.116 0.191 C06 Y8U 5 Y8U C07 C6 C 0 1 Y N N N N N -11.049 4.492 45.047 -3.198 -0.910 0.241 C07 Y8U 6 Y8U C10 C7 C 0 1 Y N N N N N -11.517 6.842 44.692 -0.927 -1.296 -0.512 C10 Y8U 7 Y8U C11 C8 C 0 1 Y N N N N N -12.365 6.839 45.840 -0.862 -2.418 0.314 C11 Y8U 8 Y8U C13 C9 C 0 1 Y N N N N N -11.886 4.513 46.173 -3.110 -2.022 1.081 C13 Y8U 9 Y8U C15 C10 C 0 1 N N N N N N -11.229 7.982 43.826 0.186 -0.826 -1.330 C15 Y8U 10 Y8U C17 C11 C 0 1 N N R N N N -13.554 8.735 44.054 1.890 -1.353 0.295 C17 Y8U 11 Y8U C18 C12 C 0 1 N N N N N N -13.616 9.019 45.534 1.509 -2.812 0.317 C18 Y8U 12 Y8U C22 C13 C 0 1 N N N N N N -11.837 10.159 42.819 2.355 -0.019 -1.868 C22 Y8U 13 Y8U C23 C14 C 0 1 N N N N N N -12.685 11.372 43.213 3.832 -0.231 -1.615 C23 Y8U 14 Y8U C25 C15 C 0 1 N N N N N N -14.512 9.585 43.194 3.355 -1.237 0.652 C25 Y8U 15 Y8U C26 C16 C 0 1 N N N N N N -15.081 11.975 43.528 5.022 0.494 0.372 C26 Y8U 16 Y8U C03 C17 C 0 1 Y N N N N N -9.079 0.807 44.094 -6.789 1.367 0.099 C03 Y8U 17 Y8U CL08 CL1 CL 0 0 N N N N N N -8.274 -0.702 43.759 -8.255 2.294 0.041 CL08 Y8U 18 Y8U C09 C18 C 0 1 Y N N N N N -10.878 5.663 44.325 -2.119 -0.551 -0.550 C09 Y8U 19 Y8U C12 C19 C 0 1 Y N N N N N -12.534 5.662 46.574 -1.952 -2.764 1.113 C12 Y8U 20 Y8U F14 F1 F 0 1 N N N N N N -10.797 3.399 42.347 -3.219 1.899 0.491 F14 Y8U 21 Y8U N16 N1 N 0 1 N N N N N N -12.188 8.940 43.592 1.483 -0.760 -0.963 N16 Y8U 22 Y8U N19 N2 N 0 1 N N N N N N -13.093 7.990 46.353 0.255 -3.237 0.354 N19 Y8U 23 Y8U O20 O1 O 0 1 N N N N N N -10.122 8.110 43.254 -0.083 -0.457 -2.457 O20 Y8U 24 Y8U O21 O2 O 0 1 N N N N N N -14.084 10.045 46.060 2.396 -3.638 0.300 O21 Y8U 25 Y8U N24 N3 N 0 1 N N N N N N -14.119 11.010 43.298 4.090 -0.307 -0.182 N24 Y8U 26 Y8U O27 O3 O 0 1 N N N N N N -14.638 13.257 43.599 5.709 1.360 -0.398 O27 Y8U 27 Y8U O28 O4 O 0 1 N N N N N N -16.278 11.702 43.699 5.242 0.435 1.565 O28 Y8U 28 Y8U C29 C20 C 0 1 N N N N N N -15.330 14.232 44.386 6.696 2.191 0.266 C29 Y8U 29 Y8U C30 C21 C 0 1 N N N N N N -15.966 15.345 43.547 7.752 1.302 0.927 C30 Y8U 30 Y8U C31 C22 C 0 1 N N N N N N -16.418 13.559 45.229 7.369 3.103 -0.762 C31 Y8U 31 Y8U C32 C23 C 0 1 N N N N N N -14.273 14.853 45.312 6.009 3.046 1.333 C32 Y8U 32 Y8U H1 H1 H 0 1 N N N N N N -9.858 2.809 46.724 -5.718 -1.829 -0.080 H1 Y8U 33 Y8U H2 H2 H 0 1 N N N N N N -8.720 0.691 46.213 -7.789 -0.505 -0.165 H2 Y8U 34 Y8U H3 H3 H 0 1 N N N N N N -9.597 1.178 42.036 -5.541 3.082 0.373 H3 Y8U 35 Y8U H4 H4 H 0 1 N N N N N N -12.026 3.605 46.741 -3.948 -2.298 1.704 H4 Y8U 36 Y8U H5 H5 H 0 1 N N N N N N -13.821 7.679 43.901 1.319 -0.855 1.078 H5 Y8U 37 Y8U H6 H6 H 0 1 N N N N N N -10.778 10.397 42.998 2.136 1.044 -1.768 H6 Y8U 38 Y8U H7 H7 H 0 1 N N N N N N -11.991 9.954 41.749 2.131 -0.321 -2.891 H7 Y8U 39 Y8U H8 H8 H 0 1 N N N N N N -12.349 11.744 44.192 4.150 -1.160 -2.090 H8 Y8U 40 Y8U H9 H9 H 0 1 N N N N N N -12.557 12.161 42.458 4.395 0.600 -2.040 H9 Y8U 41 Y8U H10 H10 H 0 1 N N N N N N -14.451 9.261 42.144 3.436 -0.911 1.689 H10 Y8U 42 Y8U H11 H11 H 0 1 N N N N N N -15.543 9.459 43.557 3.815 -2.221 0.562 H11 Y8U 43 Y8U H12 H12 H 0 1 N N N N N N -10.234 5.659 43.458 -2.193 0.307 -1.201 H12 Y8U 44 Y8U H13 H13 H 0 1 N N N N N N -13.167 5.652 47.449 -1.885 -3.622 1.767 H13 Y8U 45 Y8U H14 H14 H 0 1 N N N N N N -13.232 8.058 47.341 0.107 -4.194 0.414 H14 Y8U 46 Y8U H15 H15 H 0 1 N N N N N N -16.479 16.057 44.210 8.241 0.693 0.166 H15 Y8U 47 Y8U H16 H16 H 0 1 N N N N N N -15.183 15.870 42.981 8.493 1.926 1.425 H16 Y8U 48 Y8U H17 H17 H 0 1 N N N N N N -16.693 14.907 42.847 7.272 0.652 1.659 H17 Y8U 49 Y8U H18 H18 H 0 1 N N N N N N -16.941 14.319 45.828 6.617 3.737 -1.232 H18 Y8U 50 Y8U H19 H19 H 0 1 N N N N N N -17.137 13.056 44.566 8.111 3.728 -0.263 H19 Y8U 51 Y8U H20 H20 H 0 1 N N N N N N -15.957 12.818 45.899 7.859 2.495 -1.522 H20 Y8U 52 Y8U H21 H21 H 0 1 N N N N N N -14.745 15.616 45.948 5.530 2.396 2.066 H21 Y8U 53 Y8U H22 H22 H 0 1 N N N N N N -13.834 14.068 45.946 6.751 3.670 1.832 H22 Y8U 54 Y8U H23 H23 H 0 1 N N N N N N -13.483 15.319 44.705 5.258 3.679 0.863 H23 Y8U 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y8U C01 C02 DOUB Y N 1 Y8U C01 C06 SING Y N 2 Y8U C02 C03 SING Y N 3 Y8U C03 C04 DOUB Y N 4 Y8U C03 CL08 SING N N 5 Y8U C04 C05 SING Y N 6 Y8U C05 C06 DOUB Y N 7 Y8U C05 F14 SING N N 8 Y8U C06 C07 SING N N 9 Y8U C07 C09 DOUB Y N 10 Y8U C07 C13 SING Y N 11 Y8U C09 C10 SING Y N 12 Y8U C10 C11 DOUB Y N 13 Y8U C10 C15 SING N N 14 Y8U C11 C12 SING Y N 15 Y8U C11 N19 SING N N 16 Y8U C12 C13 DOUB Y N 17 Y8U C15 N16 SING N N 18 Y8U C15 O20 DOUB N N 19 Y8U N16 C17 SING N N 20 Y8U N16 C22 SING N N 21 Y8U C17 C18 SING N N 22 Y8U C17 C25 SING N N 23 Y8U C18 N19 SING N N 24 Y8U C18 O21 DOUB N N 25 Y8U C22 C23 SING N N 26 Y8U C23 N24 SING N N 27 Y8U N24 C25 SING N N 28 Y8U N24 C26 SING N N 29 Y8U C26 O27 SING N N 30 Y8U C26 O28 DOUB N N 31 Y8U O27 C29 SING N N 32 Y8U C29 C30 SING N N 33 Y8U C29 C31 SING N N 34 Y8U C29 C32 SING N N 35 Y8U C01 H1 SING N N 36 Y8U C02 H2 SING N N 37 Y8U C04 H3 SING N N 38 Y8U C13 H4 SING N N 39 Y8U C17 H5 SING N N 40 Y8U C22 H6 SING N N 41 Y8U C22 H7 SING N N 42 Y8U C23 H8 SING N N 43 Y8U C23 H9 SING N N 44 Y8U C25 H10 SING N N 45 Y8U C25 H11 SING N N 46 Y8U C09 H12 SING N N 47 Y8U C12 H13 SING N N 48 Y8U N19 H14 SING N N 49 Y8U C30 H15 SING N N 50 Y8U C30 H16 SING N N 51 Y8U C30 H17 SING N N 52 Y8U C31 H18 SING N N 53 Y8U C31 H19 SING N N 54 Y8U C31 H20 SING N N 55 Y8U C32 H21 SING N N 56 Y8U C32 H22 SING N N 57 Y8U C32 H23 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y8U SMILES ACDLabs 12.01 "Clc1ccc(c(F)c1)c1ccc2NC(=O)C3CN(CCN3C(=O)c2c1)C(=O)OC(C)(C)C" Y8U InChI InChI 1.06 "InChI=1S/C23H23ClFN3O4/c1-23(2,3)32-22(31)27-8-9-28-19(12-27)20(29)26-18-7-4-13(10-16(18)21(28)30)15-6-5-14(24)11-17(15)25/h4-7,10-11,19H,8-9,12H2,1-3H3,(H,26,29)/t19-/m1/s1" Y8U InChIKey InChI 1.06 BUYGMXFBMPEQNR-LJQANCHMSA-N Y8U SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)OC(=O)N1CCN2[C@H](C1)C(=O)Nc3ccc(cc3C2=O)c4ccc(Cl)cc4F" Y8U SMILES CACTVS 3.385 "CC(C)(C)OC(=O)N1CCN2[CH](C1)C(=O)Nc3ccc(cc3C2=O)c4ccc(Cl)cc4F" Y8U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)N1CCN2[C@H](C1)C(=O)Nc3ccc(cc3C2=O)c4ccc(cc4F)Cl" Y8U SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)N1CCN2C(C1)C(=O)Nc3ccc(cc3C2=O)c4ccc(cc4F)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y8U "SYSTEMATIC NAME" ACDLabs 12.01 "tert-butyl (5S,8M,12aR)-8-(4-chloro-2-fluorophenyl)-6,12-dioxo-3,4,6,11,12,12a-hexahydropyrazino[2,1-c][1,4]benzodiazepine-2(1H)-carboxylate" Y8U "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{tert}-butyl (4~{a}~{R})-9-(4-chloranyl-2-fluoranyl-phenyl)-5,11-bis(oxidanylidene)-2,4,4~{a},6-tetrahydro-1~{H}-pyrazino[2,1-c][1,4]benzodiazepine-3-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y8U "Create component" 2023-06-12 RCSB Y8U "Initial release" 2024-12-18 RCSB #