data_Y8V # _chem_comp.id Y8V _chem_comp.name "(1S,2S)-2-((S)-2-(((((1R,3S,5S)-bicyclo[3.3.1]non-6-en-3-yl)methoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H39 N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-10 _chem_comp.pdbx_modified_date 2021-02-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 529.647 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y8V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LKW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y8V C12 C1 C 0 1 N N N 10.915 21.518 27.768 -1.322 -0.105 0.661 C12 Y8V 1 Y8V C14 C2 C 0 1 N N N 13.330 21.857 28.159 -0.638 -0.887 -1.591 C14 Y8V 2 Y8V C15 C3 C 0 1 N N N 14.663 22.341 27.690 0.314 -0.626 -2.759 C15 Y8V 3 Y8V C16 C4 C 0 1 N N N 15.728 22.145 28.786 0.068 -1.660 -3.859 C16 Y8V 4 Y8V C17 C5 C 0 1 N N N 15.099 21.629 26.418 0.066 0.778 -3.315 C17 Y8V 5 Y8V C19 C6 C 0 1 N N N 11.159 23.946 25.988 2.115 0.308 -0.513 C19 Y8V 6 Y8V C21 C7 C 0 1 N N N 9.988 25.789 24.966 4.468 0.650 -0.722 C21 Y8V 7 Y8V C24 C8 C 0 1 N N R 8.264 28.576 24.091 8.270 0.470 -0.168 C24 Y8V 8 Y8V C25 C9 C 0 1 N N N 8.431 28.472 25.608 8.289 0.949 1.284 C25 Y8V 9 Y8V C26 C10 C 0 1 N N S 9.859 28.855 25.922 7.121 0.289 2.027 C26 Y8V 10 Y8V C02 C11 C 0 1 N N N 6.678 20.890 24.736 -3.511 2.609 0.098 C02 Y8V 11 Y8V C04 C12 C 0 1 N N N 5.675 22.564 26.148 -5.594 3.398 -0.562 C04 Y8V 12 Y8V C05 C13 C 0 1 N N N 6.848 21.931 26.924 -5.695 3.168 0.962 C05 Y8V 13 Y8V C06 C14 C 0 1 N N S 7.622 21.025 25.934 -4.460 2.277 1.229 C06 Y8V 14 Y8V C07 C15 C 0 1 N N N 8.031 19.668 26.552 -4.847 0.797 1.187 C07 Y8V 15 Y8V C08 C16 C 0 1 N N S 9.118 19.811 27.697 -3.615 -0.061 1.484 C08 Y8V 16 Y8V C09 C17 C 0 1 N N S 9.411 18.429 28.293 -4.027 -1.532 1.565 C09 Y8V 17 Y8V C13 C18 C 0 1 N N S 12.222 22.084 27.174 -0.309 0.068 -0.441 C13 Y8V 18 Y8V C22 C19 C 0 1 N N S 10.373 27.044 24.154 5.772 0.223 -0.046 C22 Y8V 19 Y8V C23 C20 C 0 1 N N N 9.211 27.637 23.329 6.945 0.802 -0.836 C23 Y8V 20 Y8V C27 C21 C 0 1 N N N 10.888 28.168 25.031 5.812 0.777 1.383 C27 Y8V 21 Y8V C28 C22 C 0 1 N N N 9.902 30.309 25.670 7.203 -1.204 1.849 C28 Y8V 22 Y8V C29 C23 C 0 1 N N N 9.386 30.804 24.552 7.828 -1.769 0.867 C29 Y8V 23 Y8V C30 C24 C 0 1 N N N 8.477 30.037 23.634 8.558 -1.025 -0.221 C30 Y8V 24 Y8V N03 N1 N 0 1 N N N 5.610 21.779 24.924 -4.171 3.240 -0.888 N03 Y8V 25 Y8V N11 N2 N 0 1 N N N 10.356 20.376 27.180 -2.629 0.113 0.414 N11 Y8V 26 Y8V N18 N3 N 0 1 N N N 12.091 23.517 26.851 1.029 -0.232 0.075 N18 Y8V 27 Y8V O01 O1 O 0 1 N N N 6.795 20.169 23.789 -2.327 2.348 0.086 O01 Y8V 28 Y8V O10 O2 O 0 1 N N N 8.182 17.959 28.757 -5.072 -1.683 2.527 O10 Y8V 29 Y8V O20 O3 O 0 1 N N N 10.965 25.300 25.886 3.344 0.033 -0.039 O20 Y8V 30 Y8V O31 O4 O 0 1 N N N 10.505 23.184 25.318 1.984 1.044 -1.472 O31 Y8V 31 Y8V O32 O5 O 0 1 N N N 10.393 22.064 28.707 -0.962 -0.445 1.768 O32 Y8V 32 Y8V H1 H1 H 0 1 N N N 13.078 22.384 29.091 -1.666 -0.724 -1.916 H1 Y8V 33 Y8V H2 H2 H 0 1 N N N 13.403 20.777 28.356 -0.523 -1.917 -1.252 H2 Y8V 34 Y8V H3 H3 H 0 1 N N N 14.590 23.417 27.475 1.345 -0.702 -2.412 H3 Y8V 35 Y8V H4 H4 H 0 1 N N N 15.410 22.661 29.704 -0.962 -1.584 -4.206 H4 Y8V 36 Y8V H5 H5 H 0 1 N N N 15.849 21.071 28.992 0.747 -1.474 -4.692 H5 Y8V 37 Y8V H6 H6 H 0 1 N N N 16.687 22.563 28.444 0.245 -2.660 -3.463 H6 Y8V 38 Y8V H7 H7 H 0 1 N N N 16.082 22.009 26.103 -0.965 0.854 -3.662 H7 Y8V 39 Y8V H8 H8 H 0 1 N N N 15.168 20.548 26.609 0.241 1.515 -2.532 H8 Y8V 40 Y8V H9 H9 H 0 1 N N N 14.362 21.815 25.623 0.744 0.965 -4.148 H9 Y8V 41 Y8V H10 H10 H 0 1 N N N 9.080 26.027 25.539 4.371 1.735 -0.673 H10 Y8V 42 Y8V H11 H11 H 0 1 N N N 9.769 24.982 24.251 4.478 0.332 -1.765 H11 Y8V 43 Y8V H12 H12 H 0 1 N N N 7.231 28.292 23.842 9.063 0.988 -0.707 H12 Y8V 44 Y8V H13 H13 H 0 1 N N N 7.736 29.159 26.113 9.230 0.664 1.753 H13 Y8V 45 Y8V H14 H14 H 0 1 N N N 8.234 27.442 25.940 8.177 2.033 1.314 H14 Y8V 46 Y8V H15 H15 H 0 1 N N N 10.081 28.642 26.978 7.146 0.549 3.086 H15 Y8V 47 Y8V H16 H16 H 0 1 N N N 5.877 23.622 25.926 -6.187 2.656 -1.096 H16 Y8V 48 Y8V H17 H17 H 0 1 N N N 4.738 22.482 26.718 -5.931 4.403 -0.815 H17 Y8V 49 Y8V H18 H18 H 0 1 N N N 6.464 21.331 27.762 -5.622 4.110 1.505 H18 Y8V 50 Y8V H19 H19 H 0 1 N N N 7.512 22.718 27.311 -6.617 2.644 1.217 H19 Y8V 51 Y8V H20 H20 H 0 1 N N N 8.531 21.553 25.612 -4.009 2.525 2.190 H20 Y8V 52 Y8V H21 H21 H 0 1 N N N 7.135 19.192 26.977 -5.615 0.601 1.934 H21 Y8V 53 Y8V H22 H22 H 0 1 N N N 8.442 19.030 25.756 -5.231 0.551 0.197 H22 Y8V 54 Y8V H23 H23 H 0 1 N N N 8.708 20.460 28.484 -3.179 0.247 2.434 H23 Y8V 55 Y8V H24 H24 H 0 1 N N N 10.057 18.603 29.166 -3.168 -2.134 1.863 H24 Y8V 56 Y8V S1 S1 S 0 1 N Y N 9.840 17.768 27.569 -4.616 -2.085 -0.059 S1 Y8V 57 Y8V H26 H26 H 0 1 N N N 12.449 21.528 26.253 -0.337 1.095 -0.803 H26 Y8V 58 Y8V H27 H27 H 0 1 N N N 11.173 26.760 23.454 5.826 -0.865 -0.016 H27 Y8V 59 Y8V H28 H28 H 0 1 N N N 8.614 26.801 22.937 6.836 1.885 -0.896 H28 Y8V 60 Y8V H29 H29 H 0 1 N N N 9.645 28.202 22.491 6.938 0.386 -1.844 H29 Y8V 61 Y8V H30 H30 H 0 1 N N N 11.671 27.753 25.682 4.969 0.388 1.953 H30 Y8V 62 Y8V H31 H31 H 0 1 N N N 11.326 28.933 24.373 5.770 1.866 1.358 H31 Y8V 63 Y8V H32 H32 H 0 1 N N N 10.353 30.970 26.395 6.716 -1.836 2.577 H32 Y8V 64 Y8V H33 H33 H 0 1 N N N 9.635 31.821 24.286 7.812 -2.848 0.817 H33 Y8V 65 Y8V H34 H34 H 0 1 N N N 8.918 30.030 22.627 8.258 -1.411 -1.195 H34 Y8V 66 Y8V H35 H35 H 0 1 N N N 7.500 30.542 23.603 9.627 -1.187 -0.088 H35 Y8V 67 Y8V H36 H36 H 0 1 N N N 4.861 21.867 24.267 -3.760 3.552 -1.709 H36 Y8V 68 Y8V H37 H37 H 0 1 N N N 10.810 19.946 26.400 -2.917 0.385 -0.471 H37 Y8V 69 Y8V H38 H38 H 0 1 N N N 12.706 24.178 27.282 1.134 -0.820 0.840 H38 Y8V 70 Y8V H39 H39 H 0 1 N N N 8.297 17.098 29.142 -5.869 -1.174 2.325 H39 Y8V 71 Y8V O1 O6 O 0 1 N Y N ? ? ? -5.784 -1.368 -0.437 O1 Y8V 72 Y8V O2 O7 O 0 1 N Y N ? ? ? -3.527 -2.238 -0.959 O2 Y8V 73 Y8V O3 O8 O 0 1 N Y N ? ? ? -5.109 -3.505 0.179 O3 Y8V 74 Y8V H25 H25 H 0 1 N Y N ? ? ? -5.459 -3.938 -0.612 H25 Y8V 75 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y8V C23 C24 SING N N 1 Y8V C23 C22 SING N N 2 Y8V C30 C24 SING N N 3 Y8V C30 C29 SING N N 4 Y8V O01 C02 DOUB N N 5 Y8V C24 C25 SING N N 6 Y8V C22 C21 SING N N 7 Y8V C22 C27 SING N N 8 Y8V C29 C28 DOUB N N 9 Y8V C02 N03 SING N N 10 Y8V C02 C06 SING N N 11 Y8V N03 C04 SING N N 12 Y8V C21 O20 SING N N 13 Y8V C27 C26 SING N N 14 Y8V O31 C19 DOUB N N 15 Y8V C25 C26 SING N N 16 Y8V C28 C26 SING N N 17 Y8V O20 C19 SING N N 18 Y8V C06 C07 SING N N 19 Y8V C06 C05 SING N N 20 Y8V C19 N18 SING N N 21 Y8V C04 C05 SING N N 22 Y8V C17 C15 SING N N 23 Y8V C07 C08 SING N N 24 Y8V N18 C13 SING N N 25 Y8V C13 C12 SING N N 26 Y8V C13 C14 SING N N 27 Y8V N11 C08 SING N N 28 Y8V N11 C12 SING N N 29 Y8V C15 C14 SING N N 30 Y8V C15 C16 SING N N 31 Y8V C08 C09 SING N N 32 Y8V C12 O32 DOUB N N 33 Y8V C09 O10 SING N N 34 Y8V C14 H1 SING N N 35 Y8V C14 H2 SING N N 36 Y8V C15 H3 SING N N 37 Y8V C16 H4 SING N N 38 Y8V C16 H5 SING N N 39 Y8V C16 H6 SING N N 40 Y8V C17 H7 SING N N 41 Y8V C17 H8 SING N N 42 Y8V C17 H9 SING N N 43 Y8V C21 H10 SING N N 44 Y8V C21 H11 SING N N 45 Y8V C24 H12 SING N N 46 Y8V C25 H13 SING N N 47 Y8V C25 H14 SING N N 48 Y8V C26 H15 SING N N 49 Y8V C04 H16 SING N N 50 Y8V C04 H17 SING N N 51 Y8V C05 H18 SING N N 52 Y8V C05 H19 SING N N 53 Y8V C06 H20 SING N N 54 Y8V C07 H21 SING N N 55 Y8V C07 H22 SING N N 56 Y8V C08 H23 SING N N 57 Y8V C09 H24 SING N N 58 Y8V C09 S1 SING N N 59 Y8V C13 H26 SING N N 60 Y8V C22 H27 SING N N 61 Y8V C23 H28 SING N N 62 Y8V C23 H29 SING N N 63 Y8V C27 H30 SING N N 64 Y8V C27 H31 SING N N 65 Y8V C28 H32 SING N N 66 Y8V C29 H33 SING N N 67 Y8V C30 H34 SING N N 68 Y8V C30 H35 SING N N 69 Y8V N03 H36 SING N N 70 Y8V N11 H37 SING N N 71 Y8V N18 H38 SING N N 72 Y8V O10 H39 SING N N 73 Y8V S1 O1 DOUB N N 74 Y8V S1 O2 DOUB N N 75 Y8V S1 O3 SING N N 76 Y8V O3 H25 SING N N 77 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y8V InChI InChI 1.03 "InChI=1S/C24H39N3O8S/c1-14(2)8-19(27-24(31)35-13-17-10-15-4-3-5-16(9-15)11-17)22(29)26-20(23(30)36(32,33)34)12-18-6-7-25-21(18)28/h3-4,14-20,23,30H,5-13H2,1-2H3,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t15-,16+,17+,18-,19-,20-,23-/m0/s1" Y8V InChIKey InChI 1.03 ZIWRGXZFSGDQST-UIEASHSYSA-N Y8V SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@H]1C[C@@H]2CC=C[C@H](C1)C2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S](O)(=O)=O" Y8V SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1C[CH]2CC=C[CH](C1)C2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O" Y8V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@@H](O)S(=O)(=O)O)NC(=O)OC[C@H]2C[C@@H]3CC=C[C@@H](C3)C2" Y8V SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CC3CC=CC(C3)C2" # _pdbx_chem_comp_identifier.comp_id Y8V _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{S},2~{S})-2-[[(2~{S})-2-[[(1~{R},3~{S},5~{S})-3-bicyclo[3.3.1]non-6-enyl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y8V "Create component" 2021-02-10 RCSB Y8V "Initial release" 2021-02-17 RCSB ##