data_Y91 # _chem_comp.id Y91 _chem_comp.name "(1S,2S)-2-((S)-2-(((((1R,3r,5S)-bicyclo[3.3.1]nonan-3-yl)methoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H41 N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-10 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 531.663 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y91 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LKR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y91 C17 C1 C 0 1 N N N N N N -24.085 -8.464 4.695 -2.054 2.058 3.214 C17 Y91 1 Y91 C13 C2 C 0 1 N N S N N N -21.156 -5.951 3.700 -0.197 0.132 0.449 C13 Y91 2 Y91 C14 C3 C 0 1 N N N N N N -21.862 -7.319 4.028 -0.434 1.204 1.515 C14 Y91 3 Y91 C15 C4 C 0 1 N N N N N N -23.409 -7.215 4.096 -1.740 0.909 2.254 C15 Y91 4 Y91 C21 C5 C 0 1 N N N N N N -20.694 -2.953 -0.207 4.526 -0.795 0.673 C21 Y91 5 Y91 C23 C6 C 0 1 N N N N N N -21.296 -3.406 -2.712 6.969 -1.250 0.651 C23 Y91 6 Y91 C24 C7 C 0 1 N N S N N N -22.145 -3.065 -3.959 8.361 -0.763 0.276 C24 Y91 7 Y91 C26 C8 C 0 1 N N R N N N -22.525 -0.808 -3.031 7.501 1.520 -0.140 C26 Y91 8 Y91 C12 C9 C 0 1 N N N N N N -19.604 -6.128 3.761 -1.223 0.277 -0.646 C12 Y91 9 Y91 C16 C10 C 0 1 N N N N N N -23.880 -5.949 4.831 -1.595 -0.392 3.046 C16 Y91 10 Y91 C09 C11 C 0 1 N N S N N N -17.079 -6.600 6.260 -4.044 1.354 -1.668 C09 Y91 11 Y91 C08 C12 C 0 1 N N S N N N -17.408 -5.792 4.976 -3.473 -0.057 -1.518 C08 Y91 12 Y91 C06 C13 C 0 1 N N S N N N -16.821 -3.546 3.708 -4.056 -2.464 -1.189 C06 Y91 13 Y91 C02 C14 C 0 1 N N N N N N -16.125 -2.182 3.712 -3.108 -2.644 -0.024 C02 Y91 14 Y91 C04 C15 C 0 1 N N N N N N -15.113 -3.222 1.863 -5.106 -3.638 0.620 C04 Y91 15 Y91 C07 C16 C 0 1 N N N N N N -16.632 -4.421 5.007 -4.608 -1.037 -1.215 C07 Y91 16 Y91 C05 C17 C 0 1 N N N N N N -16.158 -4.215 2.501 -5.191 -3.478 -0.914 C05 Y91 17 Y91 C19 C18 C 0 1 N N N N N N -20.998 -4.309 1.811 2.196 -0.324 0.461 C19 Y91 18 Y91 C22 C19 C 0 1 N N R N N N -21.624 -2.610 -1.413 5.867 -0.412 0.016 C22 Y91 19 Y91 C25 C20 C 0 1 N N N N N N -22.113 -1.585 -4.259 8.522 0.709 0.658 C25 Y91 20 Y91 C27 C21 C 0 1 N N N N N N -21.625 -1.104 -1.813 6.088 1.082 0.215 C27 Y91 21 Y91 C28 C22 C 0 1 N N N N N N -23.990 -1.149 -2.706 7.779 1.389 -1.630 C28 Y91 22 Y91 C29 C23 C 0 1 N N N N N N -24.348 -2.654 -2.747 7.836 -0.052 -2.105 C29 Y91 23 Y91 C30 C24 C 0 1 N N N N N N -23.589 -3.512 -3.754 8.656 -0.958 -1.203 C30 Y91 24 Y91 N03 N1 N 0 1 N N N N N N -15.199 -2.007 2.678 -3.720 -3.309 0.971 N03 Y91 25 Y91 N11 N2 N 0 1 N N N N N N -18.848 -5.666 4.827 -2.503 -0.078 -0.421 N11 Y91 26 Y91 N18 N3 N 0 1 N N N N N N -21.601 -5.439 2.386 1.145 0.293 -0.115 N18 Y91 27 Y91 O01 O1 O 0 1 N N N N N N -16.345 -1.280 4.516 -1.962 -2.247 0.007 O01 Y91 28 Y91 O10 O2 O 0 1 N N N N N N -15.695 -6.704 6.424 -5.073 1.349 -2.660 O10 Y91 29 Y91 O20 O3 O 0 1 N N N N N N -21.036 -4.141 0.442 3.443 -0.097 0.005 O20 Y91 30 Y91 O31 O4 O 0 1 N N N N N N -20.427 -3.481 2.503 2.019 -1.085 1.391 O31 Y91 31 Y91 O32 O5 O 0 1 N N N N N N -19.047 -6.694 2.817 -0.896 0.713 -1.729 O32 Y91 32 Y91 H1 H1 H 0 1 N N N N N N -25.175 -8.319 4.711 -2.157 2.985 2.650 H1 Y91 33 Y91 H2 H2 H 0 1 N N N N N N -23.841 -9.343 4.080 -2.985 1.847 3.741 H2 Y91 34 Y91 H3 H3 H 0 1 N N N N N N -23.721 -8.622 5.721 -1.243 2.160 3.936 H3 Y91 35 Y91 H4 H4 H 0 1 N N N N N N -21.444 -5.230 4.479 -0.285 -0.855 0.901 H4 Y91 36 Y91 H5 H5 H 0 1 N N N N N N -21.596 -8.045 3.246 0.394 1.201 2.224 H5 Y91 37 Y91 H6 H6 H 0 1 N N N N N N -21.494 -7.677 5.001 -0.499 2.182 1.038 H6 Y91 38 Y91 H7 H7 H 0 1 N N N N N N -23.764 -7.130 3.058 -2.551 0.807 1.533 H7 Y91 39 Y91 H8 H8 H 0 1 N N N N N N -19.662 -3.044 -0.578 4.374 -1.871 0.585 H8 Y91 40 Y91 H9 H9 H 0 1 N N N N N N -20.751 -2.130 0.521 4.544 -0.516 1.726 H9 Y91 41 Y91 H10 H10 H 0 1 N N N N N N -21.436 -4.475 -2.494 6.854 -2.293 0.332 H10 Y91 42 Y91 H11 H11 H 0 1 N N N N N N -20.242 -3.218 -2.963 6.858 -1.220 1.741 H11 Y91 43 Y91 H12 H12 H 0 1 N N N N N N -21.729 -3.609 -4.820 9.097 -1.344 0.856 H12 Y91 44 Y91 H13 H13 H 0 1 N N N N N N -22.461 0.267 -3.255 7.616 2.579 0.142 H13 Y91 45 Y91 H14 H14 H 0 1 N N N N N N -24.980 -5.924 4.851 -2.547 -0.639 3.517 H14 Y91 46 Y91 H15 H15 H 0 1 N N N N N N -23.495 -5.959 5.861 -1.305 -1.198 2.371 H15 Y91 47 Y91 H16 H16 H 0 1 N N N N N N -23.502 -5.059 4.307 -0.831 -0.268 3.813 H16 Y91 48 Y91 H17 H17 H 0 1 N N N N N N -17.486 -7.610 6.106 -3.250 2.037 -1.971 H17 Y91 49 Y91 S1 S1 S 0 1 N Y N N N N -17.488 -6.085 7.104 -4.736 1.898 -0.082 S1 Y91 50 Y91 H19 H19 H 0 1 N N N N N N -17.017 -6.364 4.121 -2.979 -0.349 -2.445 H19 Y91 51 Y91 H20 H20 H 0 1 N N N N N N -17.896 -3.414 3.516 -3.555 -2.695 -2.129 H20 Y91 52 Y91 H21 H21 H 0 1 N N N N N N -14.099 -3.646 1.907 -5.793 -2.949 1.110 H21 Y91 53 Y91 H22 H22 H 0 1 N N N N N N -15.559 -4.633 5.128 -5.044 -0.799 -0.245 H22 Y91 54 Y91 H23 H23 H 0 1 N N N N N N -16.990 -3.840 5.870 -5.373 -0.957 -1.987 H23 Y91 55 Y91 H24 H24 H 0 1 N N N N N N -16.925 -4.470 1.755 -6.158 -3.071 -1.211 H24 Y91 56 Y91 H25 H25 H 0 1 N N N N N N -15.643 -5.131 2.826 -4.997 -4.426 -1.417 H25 Y91 57 Y91 H26 H26 H 0 1 N N N N N N -22.651 -2.872 -1.119 5.780 -0.643 -1.045 H26 Y91 58 Y91 H27 H27 H 0 1 N N N N N N -21.094 -1.293 -4.552 8.338 0.834 1.724 H27 Y91 59 Y91 H28 H28 H 0 1 N N N N N N -22.808 -1.364 -5.082 9.529 1.044 0.415 H28 Y91 60 Y91 H29 H29 H 0 1 N N N N N N -20.595 -0.805 -2.056 5.885 1.337 1.262 H29 Y91 61 Y91 H30 H30 H 0 1 N N N N N N -21.986 -0.514 -0.958 5.373 1.636 -0.405 H30 Y91 62 Y91 H31 H31 H 0 1 N N N N N N -24.209 -0.776 -1.695 6.995 1.920 -2.187 H31 Y91 63 Y91 H32 H32 H 0 1 N N N N N N -24.629 -0.629 -3.435 8.732 1.883 -1.861 H32 Y91 64 Y91 H33 H33 H 0 1 N N N N N N -25.420 -2.735 -2.981 6.838 -0.454 -2.261 H33 Y91 65 Y91 H34 H34 H 0 1 N N N N N N -24.159 -3.069 -1.746 8.315 -0.056 -3.106 H34 Y91 66 Y91 H35 H35 H 0 1 N N N N N N -24.111 -3.460 -4.721 9.724 -0.772 -1.382 H35 Y91 67 Y91 H36 H36 H 0 1 N N N N N N -23.585 -4.552 -3.394 8.461 -2.005 -1.471 H36 Y91 68 Y91 H37 H37 H 0 1 N N N N N N -19.340 -5.202 5.563 -2.783 -0.347 0.468 H37 Y91 69 Y91 H38 H38 H 0 1 N N N N N N -22.341 -5.904 1.900 1.278 0.843 -0.903 H38 Y91 70 Y91 H39 H39 H 0 1 N N N N N N -15.505 -7.200 7.212 -5.813 0.762 -2.455 H39 Y91 71 Y91 O1 O6 O 0 1 N Y N N N N ? ? ? -5.825 1.068 0.298 O1 Y91 72 Y91 O2 O7 O 0 1 N Y N N N N ? ? ? -3.696 2.207 0.836 O2 Y91 73 Y91 O3 O8 O 0 1 N Y N N N N ? ? ? -5.378 3.243 -0.388 O3 Y91 74 Y91 H18 H18 H 0 1 N N N N N N -15.374 -3.005 0.817 -5.333 -4.665 0.905 H18 Y91 75 Y91 H40 H40 H 0 1 N N N N N N -14.672 -1.173 2.518 -3.299 -3.540 1.814 H40 Y91 76 Y91 H41 H41 H 0 1 N Y N N N N ? ? ? -5.796 3.663 0.376 H41 Y91 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y91 C25 C24 SING N N 1 Y91 C25 C26 SING N N 2 Y91 C24 C30 SING N N 3 Y91 C24 C23 SING N N 4 Y91 C30 C29 SING N N 5 Y91 C26 C28 SING N N 6 Y91 C26 C27 SING N N 7 Y91 C29 C28 SING N N 8 Y91 C23 C22 SING N N 9 Y91 C27 C22 SING N N 10 Y91 C22 C21 SING N N 11 Y91 C21 O20 SING N N 12 Y91 O20 C19 SING N N 13 Y91 C19 N18 SING N N 14 Y91 C19 O31 DOUB N N 15 Y91 C04 C05 SING N N 16 Y91 C04 N03 SING N N 17 Y91 N18 C13 SING N N 18 Y91 C05 C06 SING N N 19 Y91 N03 C02 SING N N 20 Y91 O32 C12 DOUB N N 21 Y91 C13 C12 SING N N 22 Y91 C13 C14 SING N N 23 Y91 C06 C02 SING N N 24 Y91 C06 C07 SING N N 25 Y91 C02 O01 DOUB N N 26 Y91 C12 N11 SING N N 27 Y91 C14 C15 SING N N 28 Y91 C15 C17 SING N N 29 Y91 C15 C16 SING N N 30 Y91 N11 C08 SING N N 31 Y91 C08 C07 SING N N 32 Y91 C08 C09 SING N N 33 Y91 C09 O10 SING N N 34 Y91 C17 H1 SING N N 35 Y91 C17 H2 SING N N 36 Y91 C17 H3 SING N N 37 Y91 C13 H4 SING N N 38 Y91 C14 H5 SING N N 39 Y91 C14 H6 SING N N 40 Y91 C15 H7 SING N N 41 Y91 C21 H8 SING N N 42 Y91 C21 H9 SING N N 43 Y91 C23 H10 SING N N 44 Y91 C23 H11 SING N N 45 Y91 C24 H12 SING N N 46 Y91 C26 H13 SING N N 47 Y91 C16 H14 SING N N 48 Y91 C16 H15 SING N N 49 Y91 C16 H16 SING N N 50 Y91 C09 H17 SING N N 51 Y91 C09 S1 SING N N 52 Y91 C08 H19 SING N N 53 Y91 C06 H20 SING N N 54 Y91 C04 H21 SING N N 55 Y91 C07 H22 SING N N 56 Y91 C07 H23 SING N N 57 Y91 C05 H24 SING N N 58 Y91 C05 H25 SING N N 59 Y91 C22 H26 SING N N 60 Y91 C25 H27 SING N N 61 Y91 C25 H28 SING N N 62 Y91 C27 H29 SING N N 63 Y91 C27 H30 SING N N 64 Y91 C28 H31 SING N N 65 Y91 C28 H32 SING N N 66 Y91 C29 H33 SING N N 67 Y91 C29 H34 SING N N 68 Y91 C30 H35 SING N N 69 Y91 C30 H36 SING N N 70 Y91 N11 H37 SING N N 71 Y91 N18 H38 SING N N 72 Y91 O10 H39 SING N N 73 Y91 S1 O1 DOUB N N 74 Y91 S1 O2 DOUB N N 75 Y91 S1 O3 SING N N 76 Y91 C04 H18 SING N N 77 Y91 N03 H40 SING N N 78 Y91 O3 H41 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y91 InChI InChI 1.03 "InChI=1S/C24H41N3O8S/c1-14(2)8-19(27-24(31)35-13-17-10-15-4-3-5-16(9-15)11-17)22(29)26-20(23(30)36(32,33)34)12-18-6-7-25-21(18)28/h14-20,23,30H,3-13H2,1-2H3,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t15-,16+,17+,18-,19-,20-,23-/m0/s1" Y91 InChIKey InChI 1.03 PGYROSRJIVXTOE-UIEASHSYSA-N Y91 SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@H]1C[C@@H]2CCC[C@@H](C2)C1)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S](O)(=O)=O" Y91 SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1C[CH]2CCC[CH](C2)C1)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O" Y91 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2C[C@@H]3CCC[C@@H](C3)C2" Y91 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CC3CCCC(C3)C2" # _pdbx_chem_comp_identifier.comp_id Y91 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[(2~{S})-2-[[(1~{R},5~{S})-3-bicyclo[3.3.1]nonanyl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y91 "Create component" 2021-02-10 RCSB Y91 "Initial release" 2021-02-17 RCSB Y91 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id Y91 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C09 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #