data_Y97 # _chem_comp.id Y97 _chem_comp.name "5-(azetidin-3-ylamino)-2-methyl-~{N}-[(1~{R})-1-[3-[5-[[[(3~{R})-oxolan-3-yl]amino]methyl]thiophen-2-yl]phenyl]ethyl]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H34 N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-11 _chem_comp.pdbx_modified_date 2021-02-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 490.660 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y97 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LOS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y97 C01 C1 C 0 1 N N N 1.832 12.044 32.128 -1.153 1.385 -2.719 C01 Y97 1 Y97 C02 C2 C 0 1 N N R 1.792 11.758 33.677 -1.146 1.021 -1.233 C02 Y97 2 Y97 C04 C3 C 0 1 N N N 2.005 9.713 35.267 -3.273 1.854 -0.385 C04 Y97 3 Y97 C06 C4 C 0 1 Y N N 1.467 7.180 35.505 -5.397 2.698 0.605 C06 Y97 4 Y97 C07 C5 C 0 1 N N N 0.014 7.482 35.006 -4.779 4.069 0.703 C07 Y97 5 Y97 C08 C6 C 0 1 Y N N 1.888 5.854 35.845 -6.693 2.493 1.034 C08 Y97 6 Y97 C09 C7 C 0 1 Y N N 3.205 5.545 36.293 -7.267 1.239 0.941 C09 Y97 7 Y97 C10 C8 C 0 1 Y N N 4.182 6.559 36.440 -6.542 0.175 0.415 C10 Y97 8 Y97 C12 C9 C 0 1 N N N 6.725 6.078 36.000 -8.502 -1.297 0.783 C12 Y97 9 Y97 C13 C10 C 0 1 N N N 7.372 7.398 35.340 -9.504 -1.584 -0.344 C13 Y97 10 Y97 C15 C11 C 0 1 N N N 8.168 5.855 36.644 -8.816 -2.742 1.196 C15 Y97 11 Y97 C16 C12 C 0 1 Y N N 3.736 7.886 36.088 -5.240 0.371 -0.019 C16 Y97 12 Y97 O17 O1 O 0 1 N N N 1.453 10.400 36.154 -2.809 2.977 -0.409 O17 Y97 13 Y97 C18 C13 C 0 1 Y N N 2.771 12.719 34.474 -0.346 -0.240 -1.029 C18 Y97 14 Y97 C19 C14 C 0 1 Y N N 4.150 12.626 34.256 -0.917 -1.470 -1.299 C19 Y97 15 Y97 C20 C15 C 0 1 Y N N 5.035 13.448 34.977 -0.190 -2.633 -1.113 C20 Y97 16 Y97 C21 C16 C 0 1 Y N N 4.529 14.350 35.946 1.111 -2.571 -0.657 C21 Y97 17 Y97 C22 C17 C 0 1 Y N N 3.126 14.466 36.228 1.693 -1.332 -0.383 C22 Y97 18 Y97 C23 C18 C 0 1 Y N N 2.525 15.443 37.315 3.086 -1.258 0.105 C23 Y97 19 Y97 C24 C19 C 0 1 Y N N 3.004 16.143 38.416 3.892 -2.316 0.324 C24 Y97 20 Y97 C25 C20 C 0 1 Y N N 1.980 16.964 39.180 5.153 -1.996 0.781 C25 Y97 21 Y97 C26 C21 C 0 1 Y N N 0.701 16.865 38.662 5.384 -0.689 0.937 C26 Y97 22 Y97 C27 C22 C 0 1 N N N -0.705 17.466 38.982 6.679 -0.090 1.421 C27 Y97 23 Y97 C29 C23 C 0 1 N N R -1.089 18.620 36.524 8.828 0.768 0.708 C29 Y97 24 Y97 C33 C24 C 0 1 N N N -2.104 18.712 35.291 9.869 -0.340 0.980 C33 Y97 25 Y97 N03 N1 N 0 1 N N N 2.159 10.340 34.001 -2.522 0.806 -0.778 N03 Y97 26 Y97 C05 C25 C 0 1 Y N N 2.411 8.207 35.634 -4.662 1.637 0.075 C05 Y97 27 Y97 N11 N2 N 0 1 N N N 5.577 6.257 36.897 -7.126 -1.090 0.324 N11 Y97 28 Y97 N14 N3 N 0 1 N N N 8.778 6.990 35.798 -9.163 -3.013 -0.211 N14 Y97 29 Y97 N28 N4 N 0 1 N N N -1.574 17.681 37.690 7.554 0.181 0.272 N28 Y97 30 Y97 C30 C26 C 0 1 N N N -0.974 20.118 36.960 9.457 1.602 -0.431 C30 Y97 31 Y97 C31 C27 C 0 1 N N N -1.327 20.888 35.683 10.804 0.899 -0.712 C31 Y97 32 Y97 O32 O2 O 0 1 N N N -2.044 20.080 34.815 10.615 -0.457 -0.251 O32 Y97 33 Y97 S34 S1 S 0 1 Y N N 0.765 15.771 37.251 3.952 0.226 0.484 S34 Y97 34 Y97 C35 C28 C 0 1 Y N N 2.290 13.616 35.463 0.955 -0.163 -0.577 C35 Y97 35 Y97 H1 H1 H 0 1 N N N 1.557 13.092 31.941 -0.129 1.545 -3.059 H1 Y97 36 Y97 H2 H2 H 0 1 N N N 2.847 11.858 31.747 -1.602 0.573 -3.291 H2 Y97 37 Y97 H3 H3 H 0 1 N N N 1.120 11.381 31.614 -1.731 2.297 -2.868 H3 Y97 38 Y97 H4 H4 H 0 1 N N N 0.769 11.951 34.031 -0.697 1.834 -0.662 H4 Y97 39 Y97 H5 H5 H 0 1 N N N -0.023 7.397 33.910 -4.879 4.582 -0.253 H5 Y97 40 Y97 H6 H6 H 0 1 N N N -0.685 6.759 35.453 -5.288 4.642 1.478 H6 Y97 41 Y97 H7 H7 H 0 1 N N N -0.272 8.501 35.305 -3.723 3.974 0.956 H7 Y97 42 Y97 H8 H8 H 0 1 N N N 1.173 5.049 35.758 -7.261 3.315 1.445 H8 Y97 43 Y97 H9 H9 H 0 1 N N N 3.462 4.522 36.524 -8.281 1.085 1.279 H9 Y97 44 Y97 H10 H10 H 0 1 N N N 6.532 5.323 35.224 -8.834 -0.546 1.500 H10 Y97 45 Y97 H11 H11 H 0 1 N N N 7.016 8.337 35.788 -10.536 -1.358 -0.075 H11 Y97 46 Y97 H12 H12 H 0 1 N N N 7.259 7.447 34.247 -9.213 -1.155 -1.303 H12 Y97 47 Y97 H13 H13 H 0 1 N N N 8.598 4.865 36.431 -7.943 -3.295 1.543 H13 Y97 48 Y97 H14 H14 H 0 1 N N N 8.202 6.044 37.727 -9.664 -2.825 1.877 H14 Y97 49 Y97 H15 H15 H 0 1 N N N 4.448 8.694 36.172 -4.675 -0.454 -0.428 H15 Y97 50 Y97 H16 H16 H 0 1 N N N 4.535 11.922 33.533 -1.935 -1.524 -1.656 H16 Y97 51 Y97 H17 H17 H 0 1 N N N 6.098 13.392 34.793 -0.641 -3.591 -1.325 H17 Y97 52 Y97 H18 H18 H 0 1 N N N 5.223 14.972 36.491 1.677 -3.479 -0.512 H18 Y97 53 Y97 H19 H19 H 0 1 N N N 4.042 16.105 38.711 3.574 -3.335 0.155 H19 Y97 54 Y97 H20 H20 H 0 1 N N N 2.226 17.566 40.042 5.899 -2.747 0.997 H20 Y97 55 Y97 H21 H21 H 0 1 N N N -0.569 18.437 39.481 6.473 0.842 1.948 H21 Y97 56 Y97 H22 H22 H 0 1 N N N -1.238 16.779 39.656 7.173 -0.788 2.097 H22 Y97 57 Y97 H23 H23 H 0 1 N N N -0.113 18.270 36.158 8.681 1.383 1.595 H23 Y97 58 Y97 H24 H24 H 0 1 N N N -3.125 18.468 35.619 10.529 -0.049 1.797 H24 Y97 59 Y97 H25 H25 H 0 1 N N N -1.799 18.018 34.494 9.370 -1.281 1.214 H25 Y97 60 Y97 H26 H26 H 0 1 N N N 2.546 9.788 33.262 -2.892 -0.090 -0.758 H26 Y97 61 Y97 H27 H27 H 0 1 N N N 5.510 5.408 37.421 -6.621 -1.833 -0.043 H27 Y97 62 Y97 H28 H28 H 0 1 N N N 9.373 6.675 35.059 -9.988 -3.589 -0.276 H28 Y97 63 Y97 H30 H30 H 0 1 N N N -2.454 18.044 37.998 7.093 0.775 -0.401 H30 Y97 64 Y97 H32 H32 H 0 1 N N N 0.048 20.354 37.292 8.822 1.579 -1.317 H32 Y97 65 Y97 H33 H33 H 0 1 N N N -1.684 20.348 37.768 9.621 2.629 -0.106 H33 Y97 66 Y97 H34 H34 H 0 1 N N N -0.400 21.217 35.190 11.022 0.910 -1.779 H34 Y97 67 Y97 H35 H35 H 0 1 N N N -1.934 21.767 35.946 11.607 1.382 -0.155 H35 Y97 68 Y97 H36 H36 H 0 1 N N N 1.226 13.653 35.643 1.401 0.799 -0.371 H36 Y97 69 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y97 C01 C02 SING N N 1 Y97 C02 N03 SING N N 2 Y97 C02 C18 SING N N 3 Y97 N03 C04 SING N N 4 Y97 C19 C18 DOUB Y N 5 Y97 C19 C20 SING Y N 6 Y97 C18 C35 SING Y N 7 Y97 O32 C33 SING N N 8 Y97 O32 C31 SING N N 9 Y97 C20 C21 DOUB Y N 10 Y97 C07 C06 SING N N 11 Y97 C04 C05 SING N N 12 Y97 C04 O17 DOUB N N 13 Y97 C33 C29 SING N N 14 Y97 C13 N14 SING N N 15 Y97 C13 C12 SING N N 16 Y97 C35 C22 DOUB Y N 17 Y97 C06 C05 DOUB Y N 18 Y97 C06 C08 SING Y N 19 Y97 C05 C16 SING Y N 20 Y97 C31 C30 SING N N 21 Y97 N14 C15 SING N N 22 Y97 C08 C09 DOUB Y N 23 Y97 C21 C22 SING Y N 24 Y97 C12 C15 SING N N 25 Y97 C12 N11 SING N N 26 Y97 C16 C10 DOUB Y N 27 Y97 C22 C23 SING N N 28 Y97 C09 C10 SING Y N 29 Y97 C10 N11 SING N N 30 Y97 C29 C30 SING N N 31 Y97 C29 N28 SING N N 32 Y97 S34 C23 SING Y N 33 Y97 S34 C26 SING Y N 34 Y97 C23 C24 DOUB Y N 35 Y97 N28 C27 SING N N 36 Y97 C24 C25 SING Y N 37 Y97 C26 C27 SING N N 38 Y97 C26 C25 DOUB Y N 39 Y97 C01 H1 SING N N 40 Y97 C01 H2 SING N N 41 Y97 C01 H3 SING N N 42 Y97 C02 H4 SING N N 43 Y97 C07 H5 SING N N 44 Y97 C07 H6 SING N N 45 Y97 C07 H7 SING N N 46 Y97 C08 H8 SING N N 47 Y97 C09 H9 SING N N 48 Y97 C12 H10 SING N N 49 Y97 C13 H11 SING N N 50 Y97 C13 H12 SING N N 51 Y97 C15 H13 SING N N 52 Y97 C15 H14 SING N N 53 Y97 C16 H15 SING N N 54 Y97 C19 H16 SING N N 55 Y97 C20 H17 SING N N 56 Y97 C21 H18 SING N N 57 Y97 C24 H19 SING N N 58 Y97 C25 H20 SING N N 59 Y97 C27 H21 SING N N 60 Y97 C27 H22 SING N N 61 Y97 C29 H23 SING N N 62 Y97 C33 H24 SING N N 63 Y97 C33 H25 SING N N 64 Y97 N03 H26 SING N N 65 Y97 N11 H27 SING N N 66 Y97 N14 H28 SING N N 67 Y97 N28 H30 SING N N 68 Y97 C30 H32 SING N N 69 Y97 C30 H33 SING N N 70 Y97 C31 H34 SING N N 71 Y97 C31 H35 SING N N 72 Y97 C35 H36 SING N N 73 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y97 InChI InChI 1.03 "InChI=1S/C28H34N4O2S/c1-18-6-7-22(32-24-14-29-15-24)13-26(18)28(33)31-19(2)20-4-3-5-21(12-20)27-9-8-25(35-27)16-30-23-10-11-34-17-23/h3-9,12-13,19,23-24,29-30,32H,10-11,14-17H2,1-2H3,(H,31,33)/t19-,23-/m1/s1" Y97 InChIKey InChI 1.03 JZRRCGQQCZGHEA-AUSIDOKSSA-N Y97 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](NC(=O)c1cc(NC2CNC2)ccc1C)c3cccc(c3)c4sc(CN[C@@H]5CCOC5)cc4" Y97 SMILES CACTVS 3.385 "C[CH](NC(=O)c1cc(NC2CNC2)ccc1C)c3cccc(c3)c4sc(CN[CH]5CCOC5)cc4" Y97 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1C(=O)N[C@H](C)c2cccc(c2)c3ccc(s3)CN[C@@H]4CCOC4)NC5CNC5" Y97 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1C(=O)NC(C)c2cccc(c2)c3ccc(s3)CNC4CCOC4)NC5CNC5" # _pdbx_chem_comp_identifier.comp_id Y97 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-(azetidin-3-ylamino)-2-methyl-~{N}-[(1~{R})-1-[3-[5-[[[(3~{R})-oxolan-3-yl]amino]methyl]thiophen-2-yl]phenyl]ethyl]benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y97 "Create component" 2021-02-11 RCSB Y97 "Initial release" 2021-02-24 RCSB ##