data_Y9C # _chem_comp.id Y9C _chem_comp.name "(2E)-1-[(3aR,3bS,6aR,6bS)-5-(1H-benzotriazole-5-carbonyl)octahydrocyclobuta[1,2-c:3,4-c']dipyrrol-2(1H)-yl]-3-[4-(trifluoromethoxy)phenyl]prop-2-en-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H22 F3 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-12 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 497.469 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y9C _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G4D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y9C C10 C1 C 0 1 N N N N N N -10.661 11.163 51.360 3.663 -0.178 -0.020 C10 Y9C 1 Y9C C15 C2 C 0 1 N N N N N N -14.822 7.837 47.838 -1.732 -2.789 -0.752 C15 Y9C 2 Y9C C17 C3 C 0 1 N N N N N N -13.895 7.032 47.035 -2.851 -1.870 -0.550 C17 Y9C 3 Y9C C18 C4 C 0 1 N N N N N N -14.214 5.821 46.519 -4.102 -2.353 -0.390 C18 Y9C 4 Y9C C19 C5 C 0 1 Y N N N N N -13.264 5.046 45.744 -5.227 -1.429 -0.187 C19 Y9C 5 Y9C C21 C6 C 0 1 Y N N N N N -12.443 2.922 44.907 -7.574 -1.058 0.168 C21 Y9C 6 Y9C C26 C7 C 0 1 N N N N N N -10.736 2.317 42.456 -8.085 2.563 0.394 C26 Y9C 7 Y9C C30 C8 C 0 1 N N N N N N -10.206 13.363 52.618 5.611 -1.037 1.293 C30 Y9C 8 Y9C N01 N1 N 0 1 N N N N N N -14.304 9.012 48.252 -0.484 -2.307 -0.911 N01 Y9C 9 Y9C C02 C9 C 0 1 N N N N N N -14.908 10.240 49.171 0.720 -3.120 -1.120 C02 Y9C 10 Y9C C03 C10 C 0 1 N N S N N N -13.583 10.782 49.918 1.925 -2.220 -0.792 C03 Y9C 11 Y9C C04 C11 C 0 1 N N R N N N -12.310 10.018 49.292 1.408 -0.791 -1.086 C04 Y9C 12 Y9C C05 C12 C 0 1 N N N N N N -12.809 9.426 47.873 -0.116 -0.887 -0.902 C05 Y9C 13 Y9C C06 C13 C 0 1 N N S N N N -12.523 12.089 50.168 2.006 -1.807 0.683 C06 Y9C 14 Y9C C07 C14 C 0 1 N N R N N N -11.263 11.112 50.071 2.146 -0.347 0.188 C07 Y9C 15 Y9C C08 C15 C 0 1 N N N N N N -12.292 12.947 51.203 3.358 -2.121 1.345 C08 Y9C 16 Y9C N09 N2 N 0 1 N N N N N N -10.997 12.522 51.773 4.322 -1.107 0.906 N09 Y9C 17 Y9C O16 O1 O 0 1 N N N N N N -15.985 7.577 48.175 -1.928 -3.991 -0.776 O16 Y9C 18 Y9C C20 C16 C 0 1 Y N N N N N -13.380 3.648 45.637 -6.524 -1.928 -0.022 C20 Y9C 19 Y9C C22 C17 C 0 1 Y N N N N N -11.388 3.609 44.279 -7.348 0.313 0.195 C22 Y9C 20 Y9C C23 C18 C 0 1 Y N N N N N -11.265 4.992 44.385 -6.060 0.813 0.037 C23 Y9C 21 Y9C C24 C19 C 0 1 Y N N N N N -12.200 5.699 45.124 -5.003 -0.048 -0.153 C24 Y9C 22 Y9C O25 O2 O 0 1 N N N N N N -10.410 2.953 43.553 -8.387 1.167 0.377 O25 Y9C 23 Y9C F27 F1 F 0 1 N N N N N N -11.894 1.722 42.611 -7.505 2.930 -0.825 F27 Y9C 24 Y9C F28 F2 F 0 1 N N N N N N -10.805 3.223 41.544 -9.262 3.293 0.589 F28 Y9C 25 Y9C F29 F3 F 0 1 N N N N N N -9.775 1.480 42.168 -7.190 2.834 1.435 F29 Y9C 26 Y9C C31 C20 C 0 1 Y N N N N N -8.877 12.858 53.221 6.456 0.090 0.849 C31 Y9C 27 Y9C O32 O3 O 0 1 N N N N N N -10.669 14.461 52.847 6.078 -1.903 2.007 O32 Y9C 28 Y9C C33 C21 C 0 1 Y N N N N N -8.734 11.510 53.630 7.539 0.503 1.638 C33 Y9C 29 Y9C C34 C22 C 0 1 Y N N N N N -7.526 11.065 54.194 8.327 1.542 1.240 C34 Y9C 30 Y9C C35 C23 C 0 1 Y N N N N N -7.801 13.732 53.399 6.177 0.734 -0.350 C35 Y9C 31 Y9C C36 C24 C 0 1 Y N N N N N -6.582 13.288 53.983 6.981 1.799 -0.764 C36 Y9C 32 Y9C C37 C25 C 0 1 Y N N N N N -6.427 11.964 54.377 8.060 2.204 0.043 C37 Y9C 33 Y9C N38 N3 N 0 1 Y N N N N N -5.147 11.816 54.902 8.652 3.255 -0.612 N38 Y9C 34 Y9C N39 N4 N 0 1 Y N N N N N -4.538 13.028 54.833 7.916 3.462 -1.787 N39 Y9C 35 Y9C N40 N5 N 0 1 Y N N N N N -5.421 13.949 54.261 6.961 2.603 -1.854 N40 Y9C 36 Y9C H1 H1 H 0 1 N N N N N N -11.097 10.415 52.039 3.928 -0.426 -1.048 H1 Y9C 37 Y9C H2 H2 H 0 1 N N N N N N -9.572 11.016 51.303 3.959 0.846 0.205 H2 Y9C 38 Y9C H3 H3 H 0 1 N N N N N N -12.907 7.425 46.845 -2.678 -0.804 -0.528 H3 Y9C 39 Y9C H4 H4 H 0 1 N N N N N N -15.203 5.422 46.689 -4.275 -3.419 -0.412 H4 Y9C 40 Y9C H5 H5 H 0 1 N N N N N N -12.525 1.848 44.824 -8.576 -1.442 0.291 H5 Y9C 41 Y9C H6 H6 H 0 1 N N N N N N -15.362 11.022 48.545 0.707 -3.983 -0.455 H6 Y9C 42 Y9C H7 H7 H 0 1 N N N N N N -15.651 9.871 49.893 0.772 -3.448 -2.158 H7 Y9C 43 Y9C H8 H8 H 0 1 N N N N N N -13.667 10.347 50.925 2.860 -2.510 -1.273 H8 Y9C 44 Y9C H9 H9 H 0 1 N N N N N N -12.224 9.119 49.921 1.730 -0.338 -2.024 H9 Y9C 45 Y9C H10 H10 H 0 1 N N N N N N -12.212 8.556 47.561 -0.620 -0.371 -1.719 H10 Y9C 46 Y9C H11 H11 H 0 1 N N N N N N -12.786 10.190 47.082 -0.401 -0.439 0.050 H11 Y9C 47 Y9C H12 H12 H 0 1 N N N N N N -12.542 12.659 49.227 1.126 -2.031 1.287 H12 Y9C 48 Y9C H13 H13 H 0 1 N N N N N N -10.577 11.506 49.306 1.666 0.435 0.777 H13 Y9C 49 Y9C H14 H14 H 0 1 N N N N N N -12.232 13.984 50.840 3.255 -2.087 2.429 H14 Y9C 50 Y9C H15 H15 H 0 1 N N N N N N -13.090 12.868 51.956 3.698 -3.110 1.037 H15 Y9C 51 Y9C H16 H16 H 0 1 N N N N N N -14.198 3.137 46.122 -6.701 -2.993 -0.043 H16 Y9C 52 Y9C H17 H17 H 0 1 N N N N N N -10.451 5.507 43.897 -5.890 1.880 0.058 H17 Y9C 53 Y9C H18 H18 H 0 1 N N N N N N -12.103 6.770 45.221 -4.003 0.342 -0.276 H18 Y9C 54 Y9C H19 H19 H 0 1 N N N N N N -9.557 10.821 53.508 7.751 -0.005 2.567 H19 Y9C 55 Y9C H20 H20 H 0 1 N N N N N N -7.426 10.032 54.493 9.159 1.853 1.853 H20 Y9C 56 Y9C H21 H21 H 0 1 N N N N N N -7.896 14.762 53.088 5.345 0.412 -0.959 H21 Y9C 57 Y9C H22 H22 H 0 1 N N N N N N -4.749 10.973 55.263 9.428 3.757 -0.318 H22 Y9C 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y9C N01 C02 SING N N 1 Y9C N01 C05 SING N N 2 Y9C N01 C15 SING N N 3 Y9C C02 C03 SING N N 4 Y9C C03 C04 SING N N 5 Y9C C03 C06 SING N N 6 Y9C C04 C05 SING N N 7 Y9C C04 C07 SING N N 8 Y9C C06 C07 SING N N 9 Y9C C06 C08 SING N N 10 Y9C C07 C10 SING N N 11 Y9C C08 N09 SING N N 12 Y9C N09 C10 SING N N 13 Y9C N09 C30 SING N N 14 Y9C C15 O16 DOUB N N 15 Y9C C15 C17 SING N N 16 Y9C C17 C18 DOUB N E 17 Y9C C18 C19 SING N N 18 Y9C C19 C20 DOUB Y N 19 Y9C C19 C24 SING Y N 20 Y9C C20 C21 SING Y N 21 Y9C C21 C22 DOUB Y N 22 Y9C C22 C23 SING Y N 23 Y9C C22 O25 SING N N 24 Y9C C23 C24 DOUB Y N 25 Y9C O25 C26 SING N N 26 Y9C C26 F27 SING N N 27 Y9C C26 F28 SING N N 28 Y9C C26 F29 SING N N 29 Y9C C30 C31 SING N N 30 Y9C C30 O32 DOUB N N 31 Y9C C31 C33 DOUB Y N 32 Y9C C31 C35 SING Y N 33 Y9C C33 C34 SING Y N 34 Y9C C34 C37 DOUB Y N 35 Y9C C35 C36 DOUB Y N 36 Y9C C36 C37 SING Y N 37 Y9C C36 N40 SING Y N 38 Y9C C37 N38 SING Y N 39 Y9C N38 N39 SING Y N 40 Y9C N39 N40 DOUB Y N 41 Y9C C10 H1 SING N N 42 Y9C C10 H2 SING N N 43 Y9C C17 H3 SING N N 44 Y9C C18 H4 SING N N 45 Y9C C21 H5 SING N N 46 Y9C C02 H6 SING N N 47 Y9C C02 H7 SING N N 48 Y9C C03 H8 SING N N 49 Y9C C04 H9 SING N N 50 Y9C C05 H10 SING N N 51 Y9C C05 H11 SING N N 52 Y9C C06 H12 SING N N 53 Y9C C07 H13 SING N N 54 Y9C C08 H14 SING N N 55 Y9C C08 H15 SING N N 56 Y9C C20 H16 SING N N 57 Y9C C23 H17 SING N N 58 Y9C C24 H18 SING N N 59 Y9C C33 H19 SING N N 60 Y9C C34 H20 SING N N 61 Y9C C35 H21 SING N N 62 Y9C N38 H22 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y9C SMILES ACDLabs 12.01 "FC(F)(F)Oc1ccc(cc1)/C=C/C(=O)N1CC2C3CN(CC3C2C1)C(=O)c1cc2nn[NH]c2cc1" Y9C InChI InChI 1.06 "InChI=1S/C25H22F3N5O3/c26-25(27,28)36-16-5-1-14(2-6-16)3-8-23(34)32-10-17-18(11-32)20-13-33(12-19(17)20)24(35)15-4-7-21-22(9-15)30-31-29-21/h1-9,17-20H,10-13H2,(H,29,30,31)/b8-3+/t17-,18+,19+,20-" Y9C InChIKey InChI 1.06 RNTVVANWEGFYEA-FQNXGMEXSA-N Y9C SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)Oc1ccc(/C=C/C(=O)N2C[C@H]3[C@@H](C2)[C@@H]4CN(C[C@H]34)C(=O)c5ccc6[nH]nnc6c5)cc1" Y9C SMILES CACTVS 3.385 "FC(F)(F)Oc1ccc(C=CC(=O)N2C[CH]3[CH](C2)[CH]4CN(C[CH]34)C(=O)c5ccc6[nH]nnc6c5)cc1" Y9C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1/C=C/C(=O)N2C[C@@H]3[C@H](C2)[C@@H]4[C@H]3CN(C4)C(=O)c5ccc6c(c5)nn[nH]6)OC(F)(F)F" Y9C SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C=CC(=O)N2CC3C(C2)C4C3CN(C4)C(=O)c5ccc6c(c5)nn[nH]6)OC(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y9C "SYSTEMATIC NAME" ACDLabs 12.01 "(2E)-1-[(3aR,3bS,6aR,6bS)-5-(1H-benzotriazole-5-carbonyl)octahydrocyclobuta[1,2-c:3,4-c']dipyrrol-2(1H)-yl]-3-[4-(trifluoromethoxy)phenyl]prop-2-en-1-one" Y9C "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(~{E})-1-[(1~{R},2~{S},6~{R},7~{S})-9-(1~{H}-benzotriazol-5-ylcarbonyl)-4,9-diazatricyclo[5.3.0.0^{2,6}]decan-4-yl]-3-[4-(trifluoromethyloxy)phenyl]prop-2-en-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y9C "Create component" 2023-06-12 RCSB Y9C "Initial release" 2024-12-18 RCSB #