data_Y9D # _chem_comp.id Y9D _chem_comp.name "1-[7-[6-ethenyl-8-ethoxy-7-(5-methyl-1~{H}-indazol-4-yl)-2-(1-methylpiperidin-4-yl)oxy-quinazolin-4-yl]-2,7-diazaspiro[3.5]nonan-2-yl]propan-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C36 H45 N7 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-28 _chem_comp.pdbx_modified_date 2024-01-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 623.788 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y9D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8X6R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y9D C10 C1 C 0 1 Y N N N N N 70.807 -11.427 99.070 6.373 -2.243 1.457 C10 Y9D 1 Y9D C9 C2 C 0 1 Y N N N N N 71.906 -11.913 98.390 6.973 -2.729 0.317 C9 Y9D 2 Y9D C21 C3 C 0 1 Y N N N N N 68.378 -7.318 95.682 0.562 -1.812 0.466 C21 Y9D 3 Y9D C6 C4 C 0 1 Y N N N N N 71.511 -10.691 95.073 4.489 -2.474 -2.257 C6 Y9D 4 Y9D C22 C5 C 0 1 Y N N N N N 67.265 -7.808 95.037 0.280 -0.470 0.194 C22 Y9D 5 Y9D C7 C6 C 0 1 Y N N N N N 71.047 -10.798 96.416 4.938 -2.311 -0.927 C7 Y9D 6 Y9D C12 C7 C 0 1 Y N N N N N 69.957 -10.325 97.127 4.333 -1.821 0.251 C12 Y9D 7 Y9D C19 C8 C 0 1 Y N N N N N 69.037 -9.485 96.409 2.934 -1.343 0.227 C19 Y9D 8 Y9D C20 C9 C 0 1 Y N N N N N 69.264 -8.131 96.353 1.876 -2.248 0.485 C20 Y9D 9 Y9D C11 C10 C 0 1 Y N N N N N 69.843 -10.638 98.472 5.062 -1.793 1.431 C11 Y9D 10 Y9D C17 C11 C 0 1 Y N N N N N 67.034 -9.168 95.110 1.334 0.442 -0.061 C17 Y9D 11 Y9D C8 C12 C 0 1 Y N N N N N 71.994 -11.579 97.059 6.267 -2.769 -0.883 C8 Y9D 12 Y9D C18 C13 C 0 1 Y N N N N N 67.925 -9.994 95.785 2.665 -0.008 -0.039 C18 Y9D 13 Y9D C32 C14 C 0 1 Y N N N N N 66.337 -7.005 94.364 -1.051 0.019 0.164 C32 Y9D 14 Y9D C34 C15 C 0 1 Y N N N N N 65.110 -8.862 93.912 -0.224 2.123 -0.334 C34 Y9D 15 Y9D C1 C16 C 0 1 N N N N N N 70.182 -6.547 97.871 1.187 -4.514 1.021 C1 Y9D 16 Y9D C46 C17 C 0 1 N N N N N N 65.180 1.517 92.612 -9.954 -2.885 -1.399 C46 Y9D 17 Y9D C2 C18 C 0 1 N N N N N N 70.411 -7.525 96.993 2.176 -3.663 0.777 C2 Y9D 18 Y9D C45 C19 C 0 1 N N N N N N 66.611 1.333 93.022 -8.686 -3.063 -0.562 C45 Y9D 19 Y9D C43 C20 C 0 1 N N N N N N 66.635 0.716 94.391 -7.968 -1.743 -0.450 C43 Y9D 20 Y9D C40 C21 C 0 1 N N N N N N 61.973 -8.704 94.298 1.110 4.890 0.476 C40 Y9D 21 Y9D C42 C22 C 0 1 N N N N N N 62.220 -9.938 92.051 0.224 5.399 -1.801 C42 Y9D 22 Y9D C24 C23 C 0 1 N N N N N N 65.403 -3.465 94.444 -4.051 -1.992 -0.541 C24 Y9D 23 Y9D C29 C24 C 0 1 N N N N N N 67.922 -3.486 94.877 -3.912 -1.459 1.944 C29 Y9D 24 Y9D C39 C25 C 0 1 N N N N N N 61.118 -9.862 94.771 -0.009 5.753 1.064 C39 Y9D 25 Y9D C37 C26 C 0 1 N N N N N N 61.192 -10.949 92.529 -0.869 6.247 -1.147 C37 Y9D 26 Y9D C23 C27 C 0 1 N N N N N N 65.540 -4.700 93.585 -2.993 -0.907 -0.772 C23 Y9D 27 Y9D C30 C28 C 0 1 N N N N N N 67.726 -4.972 94.708 -2.861 -0.399 1.597 C30 Y9D 28 Y9D C25 C29 C 0 1 N N N N N N 66.765 -1.503 95.581 -5.995 -2.622 1.006 C25 Y9D 29 Y9D C27 C30 C 0 1 N N N N N N 66.862 -1.698 93.434 -5.874 -0.566 0.558 C27 Y9D 30 Y9D C41 C31 C 0 1 N N N N N N 62.856 -9.011 93.080 0.634 4.277 -0.844 C41 Y9D 31 Y9D C28 C32 C 0 1 N N N N N N 66.695 -2.678 94.594 -4.823 -1.669 0.736 C28 Y9D 32 Y9D C3 C33 C 0 1 N N N N N N 68.688 -10.152 99.300 4.424 -1.271 2.693 C3 Y9D 33 Y9D C13 C34 C 0 1 N N N N N N 67.230 -13.263 94.542 5.365 2.463 0.380 C13 Y9D 34 Y9D C36 C35 C 0 1 N N N N N N 59.381 -11.479 94.096 -1.338 7.743 0.698 C36 Y9D 35 Y9D C14 C36 C 0 1 N N N N N N 67.975 -11.953 94.612 4.239 1.538 0.846 C14 Y9D 36 Y9D N5 N1 N 0 1 Y N N N N N 72.660 -11.349 94.890 5.460 -2.976 -2.966 N5 Y9D 37 Y9D N16 N2 N 0 1 Y N N N N N 65.953 -9.687 94.533 1.031 1.724 -0.319 N16 Y9D 38 Y9D N33 N3 N 0 1 Y N N N N N 65.235 -7.526 93.804 -1.243 1.303 -0.101 N33 Y9D 39 Y9D N4 N4 N 0 1 Y N N N N N 72.925 -11.872 96.099 6.582 -3.180 -2.154 N4 Y9D 40 Y9D N31 N5 N 0 1 N N N N N N 66.497 -5.581 94.236 -2.118 -0.821 0.403 N31 Y9D 41 Y9D N26 N6 N 0 1 N N N N N N 66.901 -0.628 94.422 -6.818 -1.659 0.248 N26 Y9D 42 Y9D N38 N7 N 0 1 N N N N N N 60.350 -10.448 93.655 -0.365 6.812 0.112 N38 Y9D 43 Y9D O44 O1 O 0 1 N N N N N N 66.468 1.408 95.395 -8.425 -0.756 -0.986 O44 Y9D 44 Y9D O15 O2 O 0 1 N N N N N N 67.729 -11.360 95.888 3.683 0.859 -0.281 O15 Y9D 45 Y9D O35 O3 O 0 1 N N N N N N 64.093 -9.650 93.410 -0.487 3.425 -0.599 O35 Y9D 46 Y9D H1 H1 H 0 1 N N N N N N 70.696 -11.674 100.115 6.928 -2.216 2.383 H1 Y9D 47 Y9D H2 H2 H 0 1 N N N N N N 72.654 -12.521 98.876 7.994 -3.080 0.353 H2 Y9D 48 Y9D H3 H3 H 0 1 N N N N N N 68.564 -6.254 95.661 -0.242 -2.505 0.664 H3 Y9D 49 Y9D H4 H4 H 0 1 N N N N N N 70.996 -10.144 94.297 3.508 -2.217 -2.626 H4 Y9D 50 Y9D H5 H5 H 0 1 N N N N N N 69.169 -6.236 98.081 1.406 -5.550 1.234 H5 Y9D 51 Y9D H6 H6 H 0 1 N N N N N N 71.009 -6.067 98.372 0.163 -4.171 1.005 H6 Y9D 52 Y9D H7 H7 H 0 1 N N N N N N 65.140 1.969 91.610 -10.473 -3.839 -1.481 H7 Y9D 53 Y9D H8 H8 H 0 1 N N N N N N 64.675 0.540 92.594 -10.607 -2.156 -0.919 H8 Y9D 54 Y9D H9 H9 H 0 1 N N N N N N 64.674 2.177 93.332 -9.685 -2.531 -2.395 H9 Y9D 55 Y9D H10 H10 H 0 1 N N N N N N 71.415 -7.852 96.768 3.200 -4.006 0.793 H10 Y9D 56 Y9D H11 H11 H 0 1 N N N N N N 67.120 0.671 92.307 -8.955 -3.417 0.433 H11 Y9D 57 Y9D H12 H12 H 0 1 N N N N N N 67.119 2.308 93.045 -8.033 -3.792 -1.042 H12 Y9D 58 Y9D H13 H13 H 0 1 N N N N N N 62.628 -8.401 95.128 1.988 5.508 0.294 H13 Y9D 59 Y9D H14 H14 H 0 1 N N N N N N 61.305 -7.871 94.035 1.363 4.095 1.177 H14 Y9D 60 Y9D H15 H15 H 0 1 N N N N N N 63.035 -10.503 91.574 -0.156 4.968 -2.727 H15 Y9D 61 Y9D H16 H16 H 0 1 N N N N N N 61.727 -9.302 91.301 1.089 6.026 -2.019 H16 Y9D 62 Y9D H17 H17 H 0 1 N N N N N N 64.647 -2.808 93.989 -4.738 -2.017 -1.386 H17 Y9D 63 Y9D H18 H18 H 0 1 N N N N N N 65.066 -3.774 95.445 -3.564 -2.962 -0.438 H18 Y9D 64 Y9D H19 H19 H 0 1 N N N N N N 68.717 -3.161 94.190 -3.416 -2.397 2.194 H19 Y9D 65 Y9D H20 H20 H 0 1 N N N N N N 68.232 -3.293 95.915 -4.504 -1.122 2.795 H20 Y9D 66 Y9D H21 H21 H 0 1 N N N N N N 60.417 -9.501 95.538 -0.883 5.131 1.259 H21 Y9D 67 Y9D H22 H22 H 0 1 N N N N N N 61.769 -10.636 95.204 0.331 6.202 1.997 H22 Y9D 68 Y9D H23 H23 H 0 1 N N N N N N 60.533 -11.202 91.686 -1.153 7.056 -1.820 H23 Y9D 69 Y9D H24 H24 H 0 1 N N N N N N 61.721 -11.853 92.864 -1.739 5.623 -0.942 H24 Y9D 70 Y9D H25 H25 H 0 1 N N N N N N 65.904 -4.423 92.585 -2.399 -1.160 -1.650 H25 Y9D 71 Y9D H26 H26 H 0 1 N N N N N N 64.567 -5.204 93.494 -3.485 0.052 -0.930 H26 Y9D 72 Y9D H27 H27 H 0 1 N N N N N N 67.915 -5.412 95.698 -3.355 0.552 1.401 H27 Y9D 73 Y9D H28 H28 H 0 1 N N N N N N 68.508 -5.298 94.007 -2.171 -0.285 2.434 H28 Y9D 74 Y9D H29 H29 H 0 1 N N N N N N 67.637 -1.517 96.251 -5.893 -3.593 0.519 H29 Y9D 75 Y9D H30 H30 H 0 1 N N N N N N 65.851 -1.344 96.172 -6.265 -2.701 2.059 H30 Y9D 76 Y9D H31 H31 H 0 1 N N N N N N 66.006 -1.654 92.745 -6.110 -0.030 1.478 H31 Y9D 77 Y9D H32 H32 H 0 1 N N N N N N 67.791 -1.824 92.858 -5.677 0.098 -0.284 H32 Y9D 78 Y9D H33 H33 H 0 1 N N N N N N 63.072 -8.056 92.579 1.443 3.696 -1.288 H33 Y9D 79 Y9D H34 H34 H 0 1 N N N N N N 67.869 -10.885 99.254 3.941 -2.093 3.223 H34 Y9D 80 Y9D H35 H35 H 0 1 N N N N N N 69.012 -10.029 100.344 5.189 -0.828 3.330 H35 Y9D 81 Y9D H36 H36 H 0 1 N N N N N N 68.338 -9.186 98.909 3.680 -0.516 2.439 H36 Y9D 82 Y9D H37 H37 H 0 1 N N N N N N 67.408 -13.735 93.564 6.141 1.874 -0.108 H37 Y9D 83 Y9D H38 H38 H 0 1 N N N N N N 67.586 -13.930 95.341 4.966 3.194 -0.324 H38 Y9D 84 Y9D H39 H39 H 0 1 N N N N N N 66.153 -13.079 94.670 5.788 2.981 1.240 H39 Y9D 85 Y9D H40 H40 H 0 1 N N N N N N 58.775 -11.083 94.925 -2.270 7.214 0.901 H40 Y9D 86 Y9D H41 H41 H 0 1 N N N N N N 58.723 -11.746 93.256 -0.939 8.146 1.629 H41 Y9D 87 Y9D H42 H42 H 0 1 N N N N N N 59.925 -12.373 94.434 -1.527 8.558 0.001 H42 Y9D 88 Y9D H43 H43 H 0 1 N N N N N N 69.053 -12.132 94.488 4.637 0.807 1.550 H43 Y9D 89 Y9D H44 H44 H 0 1 N N N N N N 67.621 -11.281 93.816 3.463 2.127 1.335 H44 Y9D 90 Y9D H45 H45 H 0 1 N N N N N N 73.735 -12.429 96.282 7.433 -3.546 -2.440 H45 Y9D 91 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y9D C42 C37 SING N N 1 Y9D C42 C41 SING N N 2 Y9D C37 N38 SING N N 3 Y9D C46 C45 SING N N 4 Y9D C45 C43 SING N N 5 Y9D C41 O35 SING N N 6 Y9D C41 C40 SING N N 7 Y9D O35 C34 SING N N 8 Y9D C27 N26 SING N N 9 Y9D C27 C28 SING N N 10 Y9D C23 N31 SING N N 11 Y9D C23 C24 SING N N 12 Y9D N38 C36 SING N N 13 Y9D N38 C39 SING N N 14 Y9D N33 C34 DOUB Y N 15 Y9D N33 C32 SING Y N 16 Y9D C34 N16 SING Y N 17 Y9D N31 C32 SING N N 18 Y9D N31 C30 SING N N 19 Y9D C40 C39 SING N N 20 Y9D C32 C22 DOUB Y N 21 Y9D C43 N26 SING N N 22 Y9D C43 O44 DOUB N N 23 Y9D N26 C25 SING N N 24 Y9D C24 C28 SING N N 25 Y9D N16 C17 DOUB Y N 26 Y9D C13 C14 SING N N 27 Y9D C28 C29 SING N N 28 Y9D C28 C25 SING N N 29 Y9D C14 O15 SING N N 30 Y9D C30 C29 SING N N 31 Y9D N5 C6 DOUB Y N 32 Y9D N5 N4 SING Y N 33 Y9D C22 C17 SING Y N 34 Y9D C22 C21 SING Y N 35 Y9D C6 C7 SING Y N 36 Y9D C17 C18 SING Y N 37 Y9D C21 C20 DOUB Y N 38 Y9D C18 O15 SING N N 39 Y9D C18 C19 DOUB Y N 40 Y9D N4 C8 SING Y N 41 Y9D C20 C19 SING Y N 42 Y9D C20 C2 SING N N 43 Y9D C19 C12 SING N N 44 Y9D C7 C8 DOUB Y N 45 Y9D C7 C12 SING Y N 46 Y9D C2 C1 DOUB N N 47 Y9D C8 C9 SING Y N 48 Y9D C12 C11 DOUB Y N 49 Y9D C9 C10 DOUB Y N 50 Y9D C11 C10 SING Y N 51 Y9D C11 C3 SING N N 52 Y9D C10 H1 SING N N 53 Y9D C9 H2 SING N N 54 Y9D C21 H3 SING N N 55 Y9D C6 H4 SING N N 56 Y9D C1 H5 SING N N 57 Y9D C1 H6 SING N N 58 Y9D C46 H7 SING N N 59 Y9D C46 H8 SING N N 60 Y9D C46 H9 SING N N 61 Y9D C2 H10 SING N N 62 Y9D C45 H11 SING N N 63 Y9D C45 H12 SING N N 64 Y9D C40 H13 SING N N 65 Y9D C40 H14 SING N N 66 Y9D C42 H15 SING N N 67 Y9D C42 H16 SING N N 68 Y9D C24 H17 SING N N 69 Y9D C24 H18 SING N N 70 Y9D C29 H19 SING N N 71 Y9D C29 H20 SING N N 72 Y9D C39 H21 SING N N 73 Y9D C39 H22 SING N N 74 Y9D C37 H23 SING N N 75 Y9D C37 H24 SING N N 76 Y9D C23 H25 SING N N 77 Y9D C23 H26 SING N N 78 Y9D C30 H27 SING N N 79 Y9D C30 H28 SING N N 80 Y9D C25 H29 SING N N 81 Y9D C25 H30 SING N N 82 Y9D C27 H31 SING N N 83 Y9D C27 H32 SING N N 84 Y9D C41 H33 SING N N 85 Y9D C3 H34 SING N N 86 Y9D C3 H35 SING N N 87 Y9D C3 H36 SING N N 88 Y9D C13 H37 SING N N 89 Y9D C13 H38 SING N N 90 Y9D C13 H39 SING N N 91 Y9D C36 H40 SING N N 92 Y9D C36 H41 SING N N 93 Y9D C36 H42 SING N N 94 Y9D C14 H43 SING N N 95 Y9D C14 H44 SING N N 96 Y9D N4 H45 SING N N 97 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y9D InChI InChI 1.06 "InChI=1S/C36H45N7O3/c1-6-24-19-26-32(33(45-8-3)31(24)30-23(4)9-10-28-27(30)20-37-40-28)38-35(46-25-11-15-41(5)16-12-25)39-34(26)42-17-13-36(14-18-42)21-43(22-36)29(44)7-2/h6,9-10,19-20,25H,1,7-8,11-18,21-22H2,2-5H3,(H,37,40)" Y9D InChIKey InChI 1.06 CHJQNPXKYWVVNA-UHFFFAOYSA-N Y9D SMILES_CANONICAL CACTVS 3.385 "CCOc1c2nc(OC3CCN(C)CC3)nc(N4CCC5(CC4)CN(C5)C(=O)CC)c2cc(C=C)c1c6c(C)ccc7[nH]ncc67" Y9D SMILES CACTVS 3.385 "CCOc1c2nc(OC3CCN(C)CC3)nc(N4CCC5(CC4)CN(C5)C(=O)CC)c2cc(C=C)c1c6c(C)ccc7[nH]ncc67" Y9D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CC2(C1)CCN(CC2)c3c4cc(c(c(c4nc(n3)OC5CCN(CC5)C)OCC)c6c(ccc7c6cn[nH]7)C)C=C" Y9D SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CC2(C1)CCN(CC2)c3c4cc(c(c(c4nc(n3)OC5CCN(CC5)C)OCC)c6c(ccc7c6cn[nH]7)C)C=C" # _pdbx_chem_comp_identifier.comp_id Y9D _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[7-[6-ethenyl-8-ethoxy-7-(5-methyl-1~{H}-indazol-4-yl)-2-(1-methylpiperidin-4-yl)oxy-quinazolin-4-yl]-2,7-diazaspiro[3.5]nonan-2-yl]propan-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y9D "Create component" 2023-11-28 PDBJ Y9D "Initial release" 2024-01-17 RCSB #