data_Y9H # _chem_comp.id Y9H _chem_comp.name "(5S)-2-[4-(2-fluoroethyl)piperidin-1-yl]pyrimido[1,2-a]benzimidazole" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H19 F N4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-18 _chem_comp.pdbx_modified_date 2023-06-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 298.358 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y9H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FUG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y9H C8 C1 C 0 1 Y N N 133.445 106.507 123.466 2.010 0.654 -0.204 C8 Y9H 1 Y9H C5 C2 C 0 1 N N N 137.736 107.721 121.753 -3.145 1.524 -0.135 C5 Y9H 2 Y9H C6 C3 C 0 1 N N N 136.502 107.479 120.875 -1.975 1.279 -1.093 C6 Y9H 3 Y9H N1 N1 N 0 1 N N N 136.026 106.095 121.040 -1.434 -0.064 -0.846 N1 Y9H 4 Y9H C2 C4 C 0 1 N N N 138.869 106.714 121.450 -4.169 0.396 -0.286 C2 Y9H 5 Y9H N2 N2 N 0 1 Y N N 134.454 106.798 122.628 0.700 0.804 -0.455 N2 Y9H 6 Y9H N3 N3 N 0 1 Y N N 132.756 107.343 124.291 2.968 1.554 -0.031 N3 Y9H 7 Y9H C4 C5 C 0 1 N N N 137.047 105.155 120.559 -2.350 -1.212 -0.877 C4 Y9H 8 Y9H C1 C6 C 0 1 N N N 139.633 107.036 120.153 -5.354 0.656 0.646 C1 Y9H 9 Y9H C10 C7 C 0 1 Y N N 130.869 106.951 125.894 5.444 1.389 0.451 C10 Y9H 10 Y9H C11 C8 C 0 1 Y N N 130.035 105.958 126.406 6.455 0.495 0.659 C11 Y9H 11 Y9H C12 C9 C 0 1 Y N N 130.148 104.629 125.989 6.211 -0.870 0.630 C12 Y9H 12 Y9H C13 C10 C 0 1 Y N N 131.087 104.208 125.043 4.939 -1.348 0.390 C13 Y9H 13 Y9H C14 C11 C 0 1 Y N N 131.907 105.218 124.545 3.898 -0.456 0.177 C14 Y9H 14 Y9H C15 C12 C 0 1 Y N N 133.461 104.184 122.899 1.754 -1.709 -0.222 C15 Y9H 15 Y9H C16 C13 C 0 1 Y N N 134.512 104.464 122.019 0.435 -1.549 -0.469 C16 Y9H 16 Y9H C17 C14 C 0 1 N N N 140.400 108.348 120.163 -6.433 -0.402 0.406 C17 Y9H 17 Y9H C3 C15 C 0 1 N N N 138.305 105.278 121.433 -3.517 -0.939 0.080 C3 Y9H 18 Y9H C7 C16 C 0 1 Y N N 134.990 105.772 121.901 -0.090 -0.244 -0.589 C7 Y9H 19 Y9H C9 C17 C 0 1 Y N N 131.824 106.575 124.943 4.145 0.928 0.206 C9 Y9H 20 Y9H F1 F1 F 0 1 N N N 141.233 108.411 121.297 -7.517 -0.164 1.257 F1 Y9H 21 Y9H N4 N4 N 0 1 Y N N 132.928 105.217 123.623 2.547 -0.604 -0.083 N4 Y9H 22 Y9H H15 H1 H 0 1 N N N 138.108 108.740 121.570 -2.776 1.545 0.891 H15 Y9H 23 Y9H H16 H2 H 0 1 N N N 137.445 107.621 122.809 -3.616 2.477 -0.372 H16 Y9H 24 Y9H H6 H3 H 0 1 N N N 136.767 107.649 119.821 -2.327 1.347 -2.123 H6 Y9H 25 Y9H H5 H4 H 0 1 N N N 135.704 108.176 121.170 -1.199 2.023 -0.920 H5 Y9H 26 Y9H H17 H5 H 0 1 N N N 139.590 106.773 122.279 -4.519 0.359 -1.317 H17 Y9H 27 Y9H H4 H6 H 0 1 N N N 136.658 104.128 120.618 -2.732 -1.347 -1.889 H4 Y9H 28 Y9H H3 H7 H 0 1 N N N 137.301 105.391 119.515 -1.821 -2.111 -0.561 H3 Y9H 29 Y9H H2 H8 H 0 1 N N N 138.905 107.074 119.329 -5.020 0.605 1.682 H2 Y9H 30 Y9H H1 H9 H 0 1 N N N 140.351 106.223 119.970 -5.764 1.646 0.444 H1 Y9H 31 Y9H H7 H10 H 0 1 N N N 130.781 107.977 126.221 5.645 2.450 0.477 H7 Y9H 32 Y9H H8 H11 H 0 1 N N N 129.287 106.221 127.139 7.456 0.855 0.848 H8 Y9H 33 Y9H H9 H12 H 0 1 N N N 129.481 103.895 126.416 7.021 -1.564 0.797 H9 Y9H 34 Y9H H10 H13 H 0 1 N N N 131.170 103.180 124.723 4.754 -2.412 0.368 H10 Y9H 35 Y9H H11 H14 H 0 1 N N N 133.080 103.179 123.005 2.175 -2.698 -0.127 H11 Y9H 36 Y9H H12 H15 H 0 1 N N N 134.953 103.671 121.432 -0.208 -2.409 -0.582 H12 Y9H 37 Y9H H19 H16 H 0 1 N N N 141.016 108.417 119.254 -6.767 -0.351 -0.631 H19 Y9H 38 Y9H H18 H17 H 0 1 N N N 139.688 109.186 120.187 -6.023 -1.391 0.607 H18 Y9H 39 Y9H H14 H18 H 0 1 N N N 138.050 104.986 122.462 -3.145 -0.895 1.103 H14 Y9H 40 Y9H H13 H19 H 0 1 N N N 139.077 104.600 121.040 -4.253 -1.739 -0.006 H13 Y9H 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y9H C1 C17 SING N N 1 Y9H C1 C2 SING N N 2 Y9H C17 F1 SING N N 3 Y9H C4 N1 SING N N 4 Y9H C4 C3 SING N N 5 Y9H C6 N1 SING N N 6 Y9H C6 C5 SING N N 7 Y9H N1 C7 SING N N 8 Y9H C3 C2 SING N N 9 Y9H C2 C5 SING N N 10 Y9H C7 C16 SING Y N 11 Y9H C7 N2 DOUB Y N 12 Y9H C16 C15 DOUB Y N 13 Y9H N2 C8 SING Y N 14 Y9H C15 N4 SING Y N 15 Y9H C8 N4 SING Y N 16 Y9H C8 N3 DOUB Y N 17 Y9H N4 C14 SING Y N 18 Y9H N3 C9 SING Y N 19 Y9H C14 C9 DOUB Y N 20 Y9H C14 C13 SING Y N 21 Y9H C9 C10 SING Y N 22 Y9H C13 C12 DOUB Y N 23 Y9H C10 C11 DOUB Y N 24 Y9H C12 C11 SING Y N 25 Y9H C5 H15 SING N N 26 Y9H C5 H16 SING N N 27 Y9H C6 H6 SING N N 28 Y9H C6 H5 SING N N 29 Y9H C2 H17 SING N N 30 Y9H C4 H4 SING N N 31 Y9H C4 H3 SING N N 32 Y9H C1 H2 SING N N 33 Y9H C1 H1 SING N N 34 Y9H C10 H7 SING N N 35 Y9H C11 H8 SING N N 36 Y9H C12 H9 SING N N 37 Y9H C13 H10 SING N N 38 Y9H C15 H11 SING N N 39 Y9H C16 H12 SING N N 40 Y9H C17 H19 SING N N 41 Y9H C17 H18 SING N N 42 Y9H C3 H14 SING N N 43 Y9H C3 H13 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y9H SMILES ACDLabs 12.01 "FCCC1CCN(CC1)c1nc2nc3ccccc3n2cc1" Y9H InChI InChI 1.06 "InChI=1S/C17H19FN4/c18-9-5-13-6-10-21(11-7-13)16-8-12-22-15-4-2-1-3-14(15)19-17(22)20-16/h1-4,8,12-13H,5-7,9-11H2" Y9H InChIKey InChI 1.06 DWSFKWXDRBTTCG-UHFFFAOYSA-N Y9H SMILES_CANONICAL CACTVS 3.385 "FCCC1CCN(CC1)c2ccn3c(n2)nc4ccccc34" Y9H SMILES CACTVS 3.385 "FCCC1CCN(CC1)c2ccn3c(n2)nc4ccccc34" Y9H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)nc3n2ccc(n3)N4CCC(CC4)CCF" Y9H SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)nc3n2ccc(n3)N4CCC(CC4)CCF" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y9H "SYSTEMATIC NAME" ACDLabs 12.01 "(5S)-2-[4-(2-fluoroethyl)piperidin-1-yl]pyrimido[1,2-a]benzimidazole" Y9H "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[4-(2-fluoranylethyl)piperidin-1-yl]pyrimido[1,2-a]benzimidazole" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y9H "Create component" 2023-01-18 RCSB Y9H "Initial release" 2023-06-07 RCSB #