data_Y9J # _chem_comp.id Y9J _chem_comp.name "2-[[(1~{R},2~{R},3~{a}~{S},9~{a}~{S})-2-oxidanyl-1-[(3~{S})-3-oxidanyloctyl]-2,3,3~{a},4,9,9~{a}-hexahydro-1~{H}-cyclopenta[g]naphthalen-5-yl]oxy]ethanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H34 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-28 _chem_comp.pdbx_modified_date 2024-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 390.513 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y9J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8X7A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y9J C4 C1 C 0 1 N N N N N N 127.263 115.794 90.789 7.110 -0.737 0.604 C4 Y9J 1 Y9J C5 C2 C 0 1 N N N N N N 127.843 116.775 91.824 5.996 0.022 -0.120 C5 Y9J 2 Y9J C6 C3 C 0 1 N N S N N N 129.333 116.532 91.835 4.642 -0.368 0.477 C6 Y9J 3 Y9J C7 C4 C 0 1 N N N N N N 130.154 117.712 91.296 3.540 0.481 -0.161 C7 Y9J 4 Y9J C8 C5 C 0 1 N N N N N N 131.601 117.201 91.064 2.205 0.180 0.523 C8 Y9J 5 Y9J C10 C6 C 0 1 N N R N N N 132.179 118.801 89.316 0.875 0.593 -1.575 C10 Y9J 6 Y9J C13 C7 C 0 1 N N S N N N 133.337 116.695 89.372 -0.250 0.793 0.621 C13 Y9J 7 Y9J C15 C8 C 0 1 Y N N N N N 133.001 116.263 86.756 -2.536 1.866 0.476 C15 Y9J 8 Y9J C17 C9 C 0 1 N N N N N N 134.787 117.646 87.544 -2.297 -0.632 0.113 C17 Y9J 9 Y9J C20 C10 C 0 1 Y N N N N N 132.288 116.818 84.258 -4.729 2.824 0.749 C20 Y9J 10 Y9J C21 C11 C 0 1 Y N N N N N 132.089 116.077 85.369 -3.341 2.977 0.707 C21 Y9J 11 Y9J C22 C12 C 0 1 N N N N N N 135.801 118.697 83.765 -6.498 -0.809 0.196 C22 Y9J 12 Y9J C1 C13 C 0 1 N N N N N N 125.018 116.711 89.269 10.932 -0.715 0.135 C1 Y9J 13 Y9J C2 C14 C 0 1 N N N N N N 126.278 117.555 89.380 9.578 -1.105 0.732 C2 Y9J 14 Y9J C3 C15 C 0 1 N N N N N N 127.402 116.513 89.440 8.464 -0.347 0.008 C3 Y9J 15 Y9J C9 C16 C 0 1 N N R N N N 132.014 117.335 89.574 1.103 1.029 -0.115 C9 Y9J 16 Y9J C11 C17 C 0 1 N N N N N N 133.708 119.161 89.183 -0.568 0.037 -1.651 C11 Y9J 17 Y9J C12 C18 C 0 1 N N S N N N 134.366 117.772 89.005 -0.858 -0.362 -0.198 C12 Y9J 18 Y9J C14 C19 C 0 1 N N N N N N 133.180 115.767 88.162 -1.054 2.077 0.418 C14 Y9J 19 Y9J C16 C20 C 0 1 Y N N N N N 133.886 117.308 86.394 -3.117 0.611 0.306 C16 Y9J 20 Y9J C18 C21 C 0 1 Y N N N N N 133.892 118.001 85.021 -4.505 0.479 0.338 C18 Y9J 21 Y9J C19 C22 C 0 1 Y N N N N N 133.117 117.690 84.139 -5.309 1.584 0.559 C19 Y9J 22 Y9J O1 O1 O 0 1 N N N N N N 134.797 119.041 84.704 -5.071 -0.742 0.151 O1 Y9J 23 Y9J C23 C23 C 0 1 N N N N N N 135.767 119.572 82.494 -6.941 -2.231 -0.031 C23 Y9J 24 Y9J O2 O2 O 0 1 N N N N N N 136.794 119.866 81.855 -6.120 -3.099 -0.213 O2 Y9J 25 Y9J O3 O3 O 0 1 N N N N N N 134.728 120.030 81.992 -8.249 -2.534 -0.032 O3 Y9J 26 Y9J O4 O4 O 0 1 N N N N N N 131.514 119.136 88.164 1.015 1.716 -2.449 O4 Y9J 27 Y9J O5 O5 O 0 1 N N N N N N 129.621 116.291 93.140 4.388 -1.750 0.218 O5 Y9J 28 Y9J H13 H1 H 0 1 N N N N N N 126.206 115.582 91.007 7.093 -0.482 1.664 H13 Y9J 29 Y9J H14 H2 H 0 1 N N N N N N 127.833 114.853 90.786 6.956 -1.809 0.486 H14 Y9J 30 Y9J H16 H3 H 0 1 N N N N N N 127.627 117.813 91.531 6.150 1.094 -0.001 H16 Y9J 31 Y9J H15 H4 H 0 1 N N N N N N 127.416 116.579 92.819 6.013 -0.232 -1.180 H15 Y9J 32 Y9J H1 H5 H 0 1 N N N N N N 129.550 115.648 91.217 4.656 -0.196 1.553 H1 Y9J 33 Y9J H17 H6 H 0 1 N N N N N N 130.158 118.533 92.028 3.780 1.538 -0.040 H17 Y9J 34 Y9J H18 H7 H 0 1 N N N N N N 129.724 118.068 90.348 3.467 0.244 -1.222 H18 Y9J 35 Y9J H20 H8 H 0 1 N N N N N N 131.659 116.143 91.358 1.965 -0.876 0.403 H20 Y9J 36 Y9J H19 H9 H 0 1 N N N N N N 132.293 117.792 91.682 2.278 0.418 1.584 H19 Y9J 37 Y9J H3 H10 H 0 1 N N N N N N 131.775 119.360 90.173 1.590 -0.183 -1.849 H3 Y9J 38 Y9J H5 H11 H 0 1 N N N N N N 133.657 116.132 90.261 -0.122 0.540 1.674 H5 Y9J 39 Y9J H26 H12 H 0 1 N N N N N N 135.569 116.873 87.535 -2.728 -1.210 -0.704 H26 Y9J 40 Y9J H25 H13 H 0 1 N N N N N N 135.231 118.619 87.287 -2.351 -1.226 1.025 H25 Y9J 41 Y9J H28 H14 H 0 1 N N N N N N 131.655 116.615 83.407 -5.363 3.679 0.930 H28 Y9J 42 Y9J H29 H15 H 0 1 N N N N N N 131.307 115.332 85.361 -2.907 3.955 0.855 H29 Y9J 43 Y9J H31 H16 H 0 1 N N N N N N 135.660 117.647 83.471 -6.847 -0.471 1.171 H31 Y9J 44 Y9J H30 H17 H 0 1 N N N N N N 136.784 118.814 84.245 -6.916 -0.169 -0.582 H30 Y9J 45 Y9J H6 H18 H 0 1 N N N N N N 124.138 117.369 89.219 10.948 -0.970 -0.924 H6 Y9J 46 Y9J H7 H19 H 0 1 N N N N N N 125.068 116.096 88.359 11.086 0.357 0.254 H7 Y9J 47 Y9J H8 H20 H 0 1 N N N N N N 124.936 116.057 90.150 11.725 -1.256 0.651 H8 Y9J 48 Y9J H9 H21 H 0 1 N N N N N N 126.393 118.207 88.502 9.424 -2.178 0.613 H9 Y9J 49 Y9J H10 H22 H 0 1 N N N N N N 126.261 118.168 90.293 9.561 -0.851 1.792 H10 Y9J 50 Y9J H12 H23 H 0 1 N N N N N N 127.297 115.794 88.614 8.481 -0.601 -1.052 H12 Y9J 51 Y9J H11 H24 H 0 1 N N N N N N 128.382 117.008 89.373 8.618 0.726 0.127 H11 Y9J 52 Y9J H2 H25 H 0 1 N N N N N N 131.247 116.896 88.919 1.372 2.085 -0.075 H2 Y9J 53 Y9J H21 H26 H 0 1 N N N N N N 134.078 119.663 90.089 -1.262 0.808 -1.985 H21 Y9J 54 Y9J H22 H27 H 0 1 N N N N N N 133.891 119.802 88.308 -0.613 -0.831 -2.309 H22 Y9J 55 Y9J H4 H28 H 0 1 N N N N N N 135.246 117.690 89.660 -0.284 -1.261 0.029 H4 Y9J 56 Y9J H24 H29 H 0 1 N N N N N N 132.300 115.142 88.375 -0.772 2.791 1.191 H24 Y9J 57 Y9J H23 H30 H 0 1 N N N N N N 134.082 115.138 88.146 -0.799 2.499 -0.554 H23 Y9J 58 Y9J H27 H31 H 0 1 N N N N N N 133.171 118.220 83.200 -6.383 1.477 0.585 H27 Y9J 59 Y9J H32 H32 H 0 1 N N N N N N 134.944 120.520 81.207 -8.485 -3.460 -0.182 H32 Y9J 60 Y9J H33 H33 H 0 1 N N N N N N 130.594 118.916 88.253 0.883 1.506 -3.383 H33 Y9J 61 Y9J H34 H34 H 0 1 N N N N N N 129.101 115.558 93.449 4.361 -1.976 -0.721 H34 Y9J 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y9J O2 C23 DOUB N N 1 Y9J O3 C23 SING N N 2 Y9J C23 C22 SING N N 3 Y9J C22 O1 SING N N 4 Y9J C19 C20 SING Y N 5 Y9J C19 C18 DOUB Y N 6 Y9J C20 C21 DOUB Y N 7 Y9J O1 C18 SING N N 8 Y9J C18 C16 SING Y N 9 Y9J C21 C15 SING Y N 10 Y9J C16 C15 DOUB Y N 11 Y9J C16 C17 SING N N 12 Y9J C15 C14 SING N N 13 Y9J C17 C12 SING N N 14 Y9J C14 C13 SING N N 15 Y9J O4 C10 SING N N 16 Y9J C12 C11 SING N N 17 Y9J C12 C13 SING N N 18 Y9J C11 C10 SING N N 19 Y9J C1 C2 SING N N 20 Y9J C10 C9 SING N N 21 Y9J C13 C9 SING N N 22 Y9J C2 C3 SING N N 23 Y9J C3 C4 SING N N 24 Y9J C9 C8 SING N N 25 Y9J C4 C5 SING N N 26 Y9J C8 C7 SING N N 27 Y9J C7 C6 SING N N 28 Y9J C5 C6 SING N N 29 Y9J C6 O5 SING N N 30 Y9J C4 H13 SING N N 31 Y9J C4 H14 SING N N 32 Y9J C5 H16 SING N N 33 Y9J C5 H15 SING N N 34 Y9J C6 H1 SING N N 35 Y9J C7 H17 SING N N 36 Y9J C7 H18 SING N N 37 Y9J C8 H20 SING N N 38 Y9J C8 H19 SING N N 39 Y9J C10 H3 SING N N 40 Y9J C13 H5 SING N N 41 Y9J C17 H26 SING N N 42 Y9J C17 H25 SING N N 43 Y9J C20 H28 SING N N 44 Y9J C21 H29 SING N N 45 Y9J C22 H31 SING N N 46 Y9J C22 H30 SING N N 47 Y9J C1 H6 SING N N 48 Y9J C1 H7 SING N N 49 Y9J C1 H8 SING N N 50 Y9J C2 H9 SING N N 51 Y9J C2 H10 SING N N 52 Y9J C3 H12 SING N N 53 Y9J C3 H11 SING N N 54 Y9J C9 H2 SING N N 55 Y9J C11 H21 SING N N 56 Y9J C11 H22 SING N N 57 Y9J C12 H4 SING N N 58 Y9J C14 H24 SING N N 59 Y9J C14 H23 SING N N 60 Y9J C19 H27 SING N N 61 Y9J O3 H32 SING N N 62 Y9J O4 H33 SING N N 63 Y9J O5 H34 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y9J InChI InChI 1.06 "InChI=1S/C23H34O5/c1-2-3-4-7-17(24)9-10-18-19-11-15-6-5-8-22(28-14-23(26)27)20(15)12-16(19)13-21(18)25/h5-6,8,16-19,21,24-25H,2-4,7,9-14H2,1H3,(H,26,27)/t16-,17-,18+,19-,21+/m0/s1" Y9J InChIKey InChI 1.06 PAJMKGZZBBTTOY-ZFORQUDYSA-N Y9J SMILES_CANONICAL CACTVS 3.385 "CCCCC[C@H](O)CC[C@H]1[C@H](O)C[C@@H]2Cc3c(C[C@H]12)cccc3OCC(O)=O" Y9J SMILES CACTVS 3.385 "CCCCC[CH](O)CC[CH]1[CH](O)C[CH]2Cc3c(C[CH]12)cccc3OCC(O)=O" Y9J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCC[C@@H](CC[C@@H]1[C@H]2Cc3cccc(c3C[C@H]2C[C@H]1O)OCC(=O)O)O" Y9J SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCC(CCC1C2Cc3cccc(c3CC2CC1O)OCC(=O)O)O" # _pdbx_chem_comp_identifier.comp_id Y9J _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[(1~{R},2~{R},3~{a}~{S},9~{a}~{S})-2-oxidanyl-1-[(3~{S})-3-oxidanyloctyl]-2,3,3~{a},4,9,9~{a}-hexahydro-1~{H}-cyclopenta[g]naphthalen-5-yl]oxy]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y9J "Create component" 2023-11-28 PDBJ Y9J "Initial release" 2024-03-06 RCSB #