data_Y9K # _chem_comp.id Y9K _chem_comp.name "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (2R,3S,4S)-2,3,4-trihydroxy-5-[(1R,3S,3aS,13R)-1-hydroxy-10,11-dimethyl-4,6-dioxo-3-([1~1~,2~1~:2~3~,3~1~-terphenyl]-1~4~-yl)-2,3,5,6-tetrahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]pentyl dihydrogen diphosphate (non-preferred name)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C48 H51 N9 O16 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-18 _chem_comp.pdbx_modified_date 2024-08-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1071.917 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y9K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FRI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y9K C4 C1 C 0 1 Y N N N N N -7.161 59.894 82.892 5.358 1.544 1.216 C4 Y9K 1 Y9K C14 C2 C 0 1 Y N N N N N -4.101 55.086 83.794 6.601 0.692 -2.567 C14 Y9K 2 Y9K C5 C3 C 0 1 Y N N N N N -7.585 59.193 81.802 5.996 2.538 1.951 C5 Y9K 3 Y9K C6 C4 C 0 1 Y N N N N N -7.467 59.696 80.529 6.785 2.181 3.040 C6 Y9K 4 Y9K C11 C5 C 0 1 N N S N N N -7.606 55.866 82.840 6.956 3.827 -0.496 C11 Y9K 5 Y9K C7 C6 C 0 1 Y N N N N N -6.891 60.916 80.331 6.931 0.853 3.386 C7 Y9K 6 Y9K C8 C7 C 0 1 N N N N N N -6.737 61.480 78.953 7.788 0.475 4.567 C8 Y9K 7 Y9K C9 C8 C 0 1 N N R N N N -8.127 57.101 80.835 7.204 4.536 1.836 C9 Y9K 8 Y9K C10 C9 C 0 1 N N N N N N -7.284 55.953 81.353 8.016 4.122 0.588 C10 Y9K 9 Y9K C12 C10 C 0 1 Y N N N N N -6.474 55.202 83.581 7.036 2.386 -0.932 C12 Y9K 10 Y9K C13 C11 C 0 1 Y N N N N N -5.223 55.643 83.226 6.525 2.009 -2.161 C13 Y9K 11 Y9K N1 N1 N 0 1 N N N N N N -8.179 57.993 81.938 5.871 3.897 1.634 N1 Y9K 12 Y9K N2 N2 N 0 1 N N N N N N -9.995 56.512 84.576 4.192 5.828 -0.879 N2 Y9K 13 Y9K C3 C12 C 0 1 Y N N N N N -6.570 61.134 82.711 5.513 0.210 1.567 C3 Y9K 14 Y9K N3 N3 N 0 1 N N N N N N -8.301 57.796 85.503 3.605 3.572 -1.111 N3 Y9K 15 Y9K C1 C13 C 0 1 N N N N N N -5.807 62.995 81.236 6.458 -1.581 3.037 C1 Y9K 16 Y9K C15 C14 C 0 1 Y N N N N N -4.173 54.041 84.690 7.194 -0.257 -1.738 C15 Y9K 17 Y9K C16 C15 C 0 1 Y N N N N N -2.907 53.489 85.227 7.273 -1.676 -2.167 C16 Y9K 18 Y9K C17 C16 C 0 1 Y N N N N N -1.860 54.349 85.504 6.760 -2.060 -3.405 C17 Y9K 19 Y9K C18 C17 C 0 1 Y N N N N N -0.643 53.892 85.952 6.834 -3.380 -3.806 C18 Y9K 20 Y9K C19 C18 C 0 1 Y N N N N N -0.437 52.545 86.093 7.416 -4.325 -2.985 C19 Y9K 21 Y9K C2 C19 C 0 1 Y N N N N N -6.441 61.658 81.456 6.295 -0.133 2.654 C2 Y9K 22 Y9K C20 C20 C 0 1 Y N N N N N -1.438 51.642 85.787 7.933 -3.952 -1.746 C20 Y9K 23 Y9K C21 C21 C 0 1 Y N N N N N -1.174 50.192 85.941 8.558 -4.969 -0.864 C21 Y9K 24 Y9K C22 C22 C 0 1 Y N N N N N -2.200 49.287 86.183 8.630 -6.299 -1.273 C22 Y9K 25 Y9K C23 C23 C 0 1 Y N N N N N -1.927 47.938 86.326 9.214 -7.240 -0.449 C23 Y9K 26 Y9K C24 C24 C 0 1 Y N N N N N -0.633 47.482 86.236 9.726 -6.866 0.780 C24 Y9K 27 Y9K C25 C25 C 0 1 Y N N N N N 0.393 48.363 86.009 9.656 -5.547 1.191 C25 Y9K 28 Y9K C26 C26 C 0 1 Y N N N N N 0.128 49.712 85.870 9.081 -4.596 0.373 C26 Y9K 29 Y9K C27 C27 C 0 1 Y N N N N N -2.662 52.125 85.329 7.866 -2.623 -1.338 C27 Y9K 30 Y9K C28 C28 C 0 1 Y N N N N N -5.437 53.567 85.007 7.712 0.129 -0.504 C28 Y9K 31 Y9K C29 C29 C 0 1 Y N N N N N -6.574 54.125 84.443 7.635 1.450 -0.109 C29 Y9K 32 Y9K C30 C30 C 0 1 N N S N N N -8.236 57.250 83.176 5.605 4.105 0.197 C30 Y9K 33 Y9K C31 C31 C 0 1 N N N N N N -9.648 56.810 83.348 5.217 5.534 -0.062 C31 Y9K 34 Y9K C32 C32 C 0 1 N N N N N N -9.250 56.930 85.611 3.455 4.859 -1.445 C32 Y9K 35 Y9K C33 C33 C 0 1 N N N N N N -7.929 58.137 84.333 4.556 3.166 -0.310 C33 Y9K 36 Y9K C34 C34 C 0 1 N N N N N N -6.681 60.001 85.317 3.750 0.862 -0.563 C34 Y9K 37 Y9K C35 C35 C 0 1 N N S N N N -7.529 61.062 85.939 2.366 0.795 0.087 C35 Y9K 38 Y9K C36 C36 C 0 1 N N S N N N -6.717 61.910 86.907 1.521 -0.266 -0.620 C36 Y9K 39 Y9K C37 C37 C 0 1 N N R N N N -7.530 62.617 87.975 0.137 -0.332 0.030 C37 Y9K 40 Y9K C38 C38 C 0 1 N N N N N N -6.676 63.540 88.804 -0.708 -1.393 -0.677 C38 Y9K 41 Y9K C39 C39 C 0 1 N N N N N N -6.239 69.805 89.277 -8.328 -2.584 1.339 C39 Y9K 42 Y9K C40 C40 C 0 1 N N R N N N -6.860 71.143 89.031 -9.196 -1.433 1.854 C40 Y9K 43 Y9K C41 C41 C 0 1 N N R N N N -6.185 73.194 88.342 -10.700 0.095 0.980 C41 Y9K 44 Y9K C42 C42 C 0 1 Y N N N N N -3.901 73.815 87.488 -10.728 0.398 -1.525 C42 Y9K 45 Y9K C43 C43 C 0 1 Y N N N N N -3.649 75.714 88.364 -12.232 1.940 -1.768 C43 Y9K 46 Y9K C44 C44 C 0 1 Y N N N N N -3.254 76.972 88.821 -13.155 2.915 -2.185 C44 Y9K 47 Y9K C45 C45 C 0 1 Y N N N N N -5.257 77.081 89.927 -13.736 3.260 0.022 C45 Y9K 48 Y9K C46 C46 C 0 1 Y N N N N N -4.874 75.272 88.771 -12.121 1.677 -0.393 C46 Y9K 49 Y9K C47 C47 C 0 1 N N R N N N -6.581 72.495 87.065 -11.561 -1.141 1.344 C47 Y9K 50 Y9K C48 C48 C 0 1 N N S N N N -7.403 71.346 87.623 -10.593 -1.960 2.233 C48 Y9K 51 Y9K N4 N4 N 0 1 N N N N N N -7.308 59.324 84.166 4.559 1.878 0.114 N4 Y9K 52 Y9K N5 N5 N 0 1 Y N N N N N -5.028 74.047 88.209 -11.165 0.701 -0.270 N5 Y9K 53 Y9K N6 N6 N 0 1 Y N N N N N -3.045 74.786 87.550 -11.355 1.125 -2.403 N6 Y9K 54 Y9K N7 N7 N 0 1 N N N N N N -2.099 77.535 88.521 -13.309 3.216 -3.527 N7 Y9K 55 Y9K N8 N8 N 0 1 Y N N N N N -4.094 77.640 89.618 -13.876 3.541 -1.261 N8 Y9K 56 Y9K N9 N9 N 0 1 Y N N N N N -5.740 75.917 89.551 -12.885 2.355 0.458 N9 Y9K 57 Y9K O1 O1 O 0 1 N N N N N N -9.431 56.685 80.625 7.074 5.958 1.898 O1 Y9K 58 Y9K O10 O2 O 0 1 N N N N N N -6.110 66.761 89.418 -4.516 -2.155 0.239 O10 Y9K 59 Y9K O11 O3 O 0 1 N N N N N N -5.827 67.916 87.280 -6.262 -3.706 -0.721 O11 Y9K 60 Y9K O12 O4 O 0 1 N N N N N N -8.027 66.841 87.956 -5.472 -4.170 1.631 O12 Y9K 61 Y9K O13 O5 O 0 1 N N N N N N -7.234 68.826 89.055 -7.005 -2.106 1.084 O13 Y9K 62 Y9K O14 O6 O 0 1 N N N N N N -5.849 72.145 89.185 -9.375 -0.454 0.817 O14 Y9K 63 Y9K O15 O7 O 0 1 N N N N N N -7.349 73.348 86.261 -12.724 -0.754 2.079 O15 Y9K 64 Y9K O16 O8 O 0 1 N N N N N N -8.765 71.687 87.710 -10.860 -1.721 3.616 O16 Y9K 65 Y9K O2 O9 O 0 1 N N N N N N -10.410 56.695 82.424 5.836 6.430 0.472 O2 Y9K 66 Y9K O3 O10 O 0 1 N N N N N N -9.506 56.493 86.692 2.628 5.159 -2.286 O3 Y9K 67 Y9K O4 O11 O 0 1 N N N N N N -7.905 61.898 84.932 2.504 0.453 1.467 O4 Y9K 68 Y9K O5 O12 O 0 1 N N N N N N -5.838 61.093 87.566 1.383 0.077 -2.000 O5 Y9K 69 Y9K O6 O13 O 0 1 N N N N N N -8.529 63.372 87.318 0.275 -0.675 1.410 O6 Y9K 70 Y9K O7 O14 O 0 1 N N N N N N -7.367 64.694 89.297 -2.036 -1.375 -0.148 O7 Y9K 71 Y9K O8 O15 O 0 1 N N N N N N -5.454 64.863 90.791 -2.739 -3.766 -0.549 O8 Y9K 72 Y9K O9 O16 O 0 1 N N N N N N -7.557 66.037 91.321 -3.542 -2.033 -2.200 O9 Y9K 73 Y9K P1 P1 P 0 1 N N N N N N -6.610 65.593 90.316 -3.198 -2.363 -0.662 P1 Y9K 74 Y9K P2 P2 P 0 1 N N N N N N -6.808 67.556 88.284 -5.824 -3.049 0.531 P2 Y9K 75 Y9K H1 H1 H 0 1 N N N N N N -3.131 55.481 83.529 6.197 0.398 -3.525 H1 Y9K 76 Y9K H2 H2 H 0 1 N N N N N N -7.830 59.126 79.686 7.285 2.946 3.616 H2 Y9K 77 Y9K H3 H3 H 0 1 N N N N N N -8.445 55.157 82.906 7.089 4.490 -1.351 H3 Y9K 78 Y9K H4 H4 H 0 1 N N N N N N -7.630 62.068 78.695 7.176 0.454 5.468 H4 Y9K 79 Y9K H5 H5 H 0 1 N N N N N N -5.849 62.129 78.920 8.222 -0.511 4.400 H5 Y9K 80 Y9K H6 H6 H 0 1 N N N N N N -6.618 60.658 78.232 8.586 1.208 4.686 H6 Y9K 81 Y9K H7 H7 H 0 1 N N N N N N -7.670 57.557 79.945 7.677 4.156 2.742 H7 Y9K 82 Y9K H8 H8 H 0 1 N N N N N N -7.553 55.016 80.844 8.602 3.227 0.798 H8 Y9K 83 Y9K H9 H9 H 0 1 N N N N N N -6.214 56.159 81.201 8.666 4.937 0.270 H9 Y9K 84 Y9K H10 H10 H 0 1 N N N N N N -5.119 56.432 82.496 6.066 2.746 -2.803 H10 Y9K 85 Y9K H11 H11 H 0 1 N N N N N N -10.819 55.970 84.743 3.980 6.757 -1.063 H11 Y9K 86 Y9K H12 H12 H 0 1 N N N N N N -6.210 61.688 83.565 5.019 -0.560 0.993 H12 Y9K 87 Y9K H14 H14 H 0 1 N N N N N N -6.580 63.777 81.265 5.679 -1.859 3.747 H14 Y9K 88 Y9K H15 H15 H 0 1 N N N N N N -5.065 63.183 82.026 6.378 -2.204 2.147 H15 Y9K 89 Y9K H16 H16 H 0 1 N N N N N N -5.310 63.008 80.255 7.436 -1.727 3.496 H16 Y9K 90 Y9K H17 H17 H 0 1 N N N N N N -2.002 55.410 85.364 6.304 -1.325 -4.052 H17 Y9K 91 Y9K H18 H18 H 0 1 N N N N N N 0.145 54.590 86.191 6.434 -3.673 -4.766 H18 Y9K 92 Y9K H19 H19 H 0 1 N N N N N N 0.518 52.185 86.447 7.471 -5.356 -3.304 H19 Y9K 93 Y9K H20 H20 H 0 1 N N N N N N -3.218 49.639 86.260 8.231 -6.593 -2.232 H20 Y9K 94 Y9K H21 H21 H 0 1 N N N N N N -2.732 47.242 86.509 9.270 -8.272 -0.765 H21 Y9K 95 Y9K H22 H22 H 0 1 N N N N N N -0.424 46.428 86.344 10.181 -7.606 1.421 H22 Y9K 96 Y9K H23 H23 H 0 1 N N N N N N 1.409 48.002 85.939 10.057 -5.260 2.151 H23 Y9K 97 Y9K H24 H24 H 0 1 N N N N N N 0.943 50.401 85.704 9.031 -3.566 0.692 H24 Y9K 98 Y9K H25 H25 H 0 1 N N N N N N -3.435 51.426 85.048 8.269 -2.329 -0.380 H25 Y9K 99 Y9K H26 H26 H 0 1 N N N N N N -5.537 52.749 85.705 8.172 -0.603 0.143 H26 Y9K 100 Y9K H27 H27 H 0 1 N N N N N N -7.545 53.716 84.679 8.033 1.750 0.849 H27 Y9K 101 Y9K H29 H29 H 0 1 N N N N N N -6.458 59.244 86.083 4.238 -0.109 -0.477 H29 Y9K 102 Y9K H30 H30 H 0 1 N N N N N N -5.743 60.464 84.976 3.644 1.123 -1.616 H30 Y9K 103 Y9K H31 H31 H 0 1 N N N N N N -8.388 60.613 86.459 1.877 1.766 0.001 H31 Y9K 104 Y9K H32 H32 H 0 1 N N N N N N -6.173 62.670 86.327 2.009 -1.236 -0.534 H32 Y9K 105 Y9K H33 H33 H 0 1 N N N N N N -7.989 61.864 88.632 -0.352 0.638 -0.056 H33 Y9K 106 Y9K H34 H34 H 0 1 N N N N N N -6.292 62.974 89.665 -0.740 -1.180 -1.745 H34 Y9K 107 Y9K H35 H35 H 0 1 N N N N N N -5.834 63.881 88.184 -0.267 -2.377 -0.515 H35 Y9K 108 Y9K H36 H36 H 0 1 N N N N N N -5.398 69.649 88.586 -8.290 -3.374 2.088 H36 Y9K 109 Y9K H37 H37 H 0 1 N N N N N N -5.877 69.744 90.314 -8.756 -2.977 0.416 H37 Y9K 110 Y9K H38 H38 H 0 1 N N N N N N -7.672 71.307 89.755 -8.723 -0.973 2.721 H38 Y9K 111 Y9K H39 H39 H 0 1 N N N N N N -7.041 73.764 88.732 -10.716 0.826 1.788 H39 Y9K 112 Y9K H40 H40 H 0 1 N N N N N N -3.735 72.912 86.920 -9.969 -0.336 -1.757 H40 Y9K 113 Y9K H41 H41 H 0 1 N N N N N N -5.895 77.662 90.577 -14.342 3.792 0.740 H41 Y9K 114 Y9K H42 H42 H 0 1 N N N N N N -5.693 72.114 86.540 -11.836 -1.701 0.450 H42 Y9K 115 Y9K H43 H43 H 0 1 N N N N N N -7.245 70.439 87.021 -10.674 -3.023 2.006 H43 Y9K 116 Y9K H44 H44 H 0 1 N N N N N N -2.037 78.427 88.968 -12.777 2.752 -4.193 H44 Y9K 117 Y9K H45 H45 H 0 1 N N N N N N -1.351 76.951 88.837 -13.949 3.891 -3.802 H45 Y9K 118 Y9K H46 H46 H 0 1 N N N N N N -9.900 56.684 81.451 7.916 6.428 1.970 H46 Y9K 119 Y9K H47 H47 H 0 1 N N N N N N -8.052 66.669 87.022 -5.177 -3.810 2.479 H47 Y9K 120 Y9K H48 H48 H 0 1 N N N N N N -6.802 74.051 85.932 -13.248 -1.498 2.407 H48 Y9K 121 Y9K H49 H49 H 0 1 N N N N N N -9.254 70.952 88.061 -11.748 -1.980 3.896 H49 Y9K 122 Y9K H50 H50 H 0 1 N N N N N N -8.449 62.593 85.283 2.932 -0.401 1.620 H50 Y9K 123 Y9K H51 H51 H 0 1 N N N N N N -5.322 61.608 88.175 0.955 0.931 -2.153 H51 Y9K 124 Y9K H52 H52 H 0 1 N N N N N N -9.057 63.828 87.963 0.703 -1.528 1.563 H52 Y9K 125 Y9K H53 H53 H 0 1 N N N N N N -7.257 65.766 92.181 -3.849 -1.129 -2.349 H53 Y9K 126 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y9K C8 C7 SING N N 1 Y9K C7 C6 DOUB Y N 2 Y9K C7 C2 SING Y N 3 Y9K C6 C5 SING Y N 4 Y9K O1 C9 SING N N 5 Y9K C9 C10 SING N N 6 Y9K C9 N1 SING N N 7 Y9K C1 C2 SING N N 8 Y9K C10 C11 SING N N 9 Y9K C2 C3 DOUB Y N 10 Y9K C5 N1 SING N N 11 Y9K C5 C4 DOUB Y N 12 Y9K N1 C30 SING N N 13 Y9K O2 C31 DOUB N N 14 Y9K C3 C4 SING Y N 15 Y9K C11 C30 SING N N 16 Y9K C11 C12 SING N N 17 Y9K C4 N4 SING N N 18 Y9K C30 C31 SING N N 19 Y9K C30 C33 SING N N 20 Y9K C13 C12 DOUB Y N 21 Y9K C13 C14 SING Y N 22 Y9K C31 N2 SING N N 23 Y9K C12 C29 SING Y N 24 Y9K C14 C15 DOUB Y N 25 Y9K N4 C33 SING N N 26 Y9K N4 C34 SING N N 27 Y9K C33 N3 DOUB N N 28 Y9K C29 C28 DOUB Y N 29 Y9K N2 C32 SING N N 30 Y9K C15 C28 SING Y N 31 Y9K C15 C16 SING N N 32 Y9K O4 C35 SING N N 33 Y9K C16 C27 DOUB Y N 34 Y9K C16 C17 SING Y N 35 Y9K C34 C35 SING N N 36 Y9K C27 C20 SING Y N 37 Y9K N3 C32 SING N N 38 Y9K C17 C18 DOUB Y N 39 Y9K C32 O3 DOUB N N 40 Y9K C20 C21 SING N N 41 Y9K C20 C19 DOUB Y N 42 Y9K C26 C21 DOUB Y N 43 Y9K C26 C25 SING Y N 44 Y9K C35 C36 SING N N 45 Y9K C21 C22 SING Y N 46 Y9K C18 C19 SING Y N 47 Y9K C25 C24 DOUB Y N 48 Y9K C22 C23 DOUB Y N 49 Y9K C24 C23 SING Y N 50 Y9K O15 C47 SING N N 51 Y9K C36 O5 SING N N 52 Y9K C36 C37 SING N N 53 Y9K C47 C48 SING N N 54 Y9K C47 C41 SING N N 55 Y9K O11 P2 DOUB N N 56 Y9K O6 C37 SING N N 57 Y9K C42 N6 DOUB Y N 58 Y9K C42 N5 SING Y N 59 Y9K N6 C43 SING Y N 60 Y9K C48 O16 SING N N 61 Y9K C48 C40 SING N N 62 Y9K O12 P2 SING N N 63 Y9K C37 C38 SING N N 64 Y9K N5 C41 SING N N 65 Y9K N5 C46 SING Y N 66 Y9K P2 O13 SING N N 67 Y9K P2 O10 SING N N 68 Y9K C41 O14 SING N N 69 Y9K C43 C46 DOUB Y N 70 Y9K C43 C44 SING Y N 71 Y9K N7 C44 SING N N 72 Y9K C46 N9 SING Y N 73 Y9K C38 O7 SING N N 74 Y9K C44 N8 DOUB Y N 75 Y9K C40 O14 SING N N 76 Y9K C40 C39 SING N N 77 Y9K O13 C39 SING N N 78 Y9K O7 P1 SING N N 79 Y9K O10 P1 SING N N 80 Y9K N9 C45 DOUB Y N 81 Y9K N8 C45 SING Y N 82 Y9K P1 O8 DOUB N N 83 Y9K P1 O9 SING N N 84 Y9K C14 H1 SING N N 85 Y9K C6 H2 SING N N 86 Y9K C11 H3 SING N N 87 Y9K C8 H4 SING N N 88 Y9K C8 H5 SING N N 89 Y9K C8 H6 SING N N 90 Y9K C9 H7 SING N N 91 Y9K C10 H8 SING N N 92 Y9K C10 H9 SING N N 93 Y9K C13 H10 SING N N 94 Y9K N2 H11 SING N N 95 Y9K C3 H12 SING N N 96 Y9K C1 H14 SING N N 97 Y9K C1 H15 SING N N 98 Y9K C1 H16 SING N N 99 Y9K C17 H17 SING N N 100 Y9K C18 H18 SING N N 101 Y9K C19 H19 SING N N 102 Y9K C22 H20 SING N N 103 Y9K C23 H21 SING N N 104 Y9K C24 H22 SING N N 105 Y9K C25 H23 SING N N 106 Y9K C26 H24 SING N N 107 Y9K C27 H25 SING N N 108 Y9K C28 H26 SING N N 109 Y9K C29 H27 SING N N 110 Y9K C34 H29 SING N N 111 Y9K C34 H30 SING N N 112 Y9K C35 H31 SING N N 113 Y9K C36 H32 SING N N 114 Y9K C37 H33 SING N N 115 Y9K C38 H34 SING N N 116 Y9K C38 H35 SING N N 117 Y9K C39 H36 SING N N 118 Y9K C39 H37 SING N N 119 Y9K C40 H38 SING N N 120 Y9K C41 H39 SING N N 121 Y9K C42 H40 SING N N 122 Y9K C45 H41 SING N N 123 Y9K C47 H42 SING N N 124 Y9K C48 H43 SING N N 125 Y9K N7 H44 SING N N 126 Y9K N7 H45 SING N N 127 Y9K O1 H46 SING N N 128 Y9K O12 H47 SING N N 129 Y9K O15 H48 SING N N 130 Y9K O16 H49 SING N N 131 Y9K O4 H50 SING N N 132 Y9K O5 H51 SING N N 133 Y9K O6 H52 SING N N 134 Y9K O9 H53 SING N N 135 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y9K SMILES ACDLabs 12.01 "Cc1cc2c(cc1C)N1C(O)CC(c3ccc(cc3)c3cccc(c3)c3ccccc3)C11C(=O)NC(=O)N=C1N2CC(O)C(O)C(O)COP(=O)(O)OP(=O)(O)OCC1OC(n2cnc3c(N)ncnc32)C(O)C1O" Y9K InChI InChI 1.06 "InChI=1S/C48H51N9O16P2/c1-24-15-32-33(16-25(24)2)57-37(60)18-31(28-13-11-27(12-14-28)30-10-6-9-29(17-30)26-7-4-3-5-8-26)48(57)45(53-47(65)54-46(48)64)55(32)19-34(58)39(61)35(59)20-70-74(66,67)73-75(68,69)71-21-36-40(62)41(63)44(72-36)56-23-52-38-42(49)50-22-51-43(38)56/h3-17,22-23,31,34-37,39-41,44,58-63H,18-21H2,1-2H3,(H,66,67)(H,68,69)(H2,49,50,51)(H,54,64,65)/t31-,34-,35+,36+,37+,39-,40+,41+,44+,48-/m0/s1" Y9K InChIKey InChI 1.06 KCNKLMOUYDWXNC-ZPVZEHDYSA-N Y9K SMILES_CANONICAL CACTVS 3.385 "Cc1cc2N(C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)C6=NC(=O)NC(=O)[C@]67[C@@H](C[C@@H](O)N7c2cc1C)c8ccc(cc8)c9cccc(c9)c%10ccccc%10" Y9K SMILES CACTVS 3.385 "Cc1cc2N(C[CH](O)[CH](O)[CH](O)CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)C6=NC(=O)NC(=O)[C]67[CH](C[CH](O)N7c2cc1C)c8ccc(cc8)c9cccc(c9)c%10ccccc%10" Y9K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc2c(cc1C)N3[C@@H](C[C@H]([C@]34C(=O)NC(=O)N=C4N2C[C@@H]([C@@H]([C@@H](COP(=O)(O)OP(=O)(O)OC[C@@H]5[C@H]([C@H]([C@@H](O5)n6cnc7c6ncnc7N)O)O)O)O)O)c8ccc(cc8)c9cccc(c9)c1ccccc1)O" Y9K SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc2c(cc1C)N3C(CC(C34C(=O)NC(=O)N=C4N2CC(C(C(COP(=O)(O)OP(=O)(O)OCC5C(C(C(O5)n6cnc7c6ncnc7N)O)O)O)O)O)c8ccc(cc8)c9cccc(c9)c1ccccc1)O" # _pdbx_chem_comp_identifier.comp_id Y9K _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (2R,3S,4S)-2,3,4-trihydroxy-5-[(1R,3S,3aS,13R)-1-hydroxy-10,11-dimethyl-4,6-dioxo-3-([1~1~,2~1~:2~3~,3~1~-terphenyl]-1~4~-yl)-2,3,5,6-tetrahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]pentyl dihydrogen diphosphate (non-preferred name)" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y9K "Create component" 2023-01-18 RCSB Y9K "Initial release" 2024-08-07 RCSB #