data_Y9L # _chem_comp.id Y9L _chem_comp.name "[4-(trifluoromethoxy)phenyl]methyl (3aR,6aS)-5-(2-oxo-1,2-dihydro[1,3]oxazolo[5,4-b]pyridine-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrole-2(1H)-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H19 F3 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-12 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 492.405 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y9L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G6K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y9L C11 C1 C 0 1 N N N N N N -14.616 8.321 48.288 -1.286 1.902 0.018 C11 Y9L 1 Y9L O12 O1 O 0 1 N N N N N N -13.814 7.482 47.449 -2.510 1.356 0.153 O12 Y9L 2 Y9L C15 C2 C 0 1 Y N N N N N -13.383 5.656 45.877 -4.916 1.483 0.337 C15 Y9L 3 Y9L C16 C3 C 0 1 Y N N N N N -13.045 4.299 46.156 -5.405 1.204 1.600 C16 Y9L 4 Y9L C17 C4 C 0 1 Y N N N N N -12.098 3.616 45.372 -6.578 0.489 1.744 C17 Y9L 5 Y9L C18 C5 C 0 1 Y N N N N N -11.485 4.315 44.298 -7.265 0.051 0.622 C18 Y9L 6 Y9L C19 C6 C 0 1 Y N N N N N -11.811 5.655 43.991 -6.772 0.333 -0.644 C19 Y9L 7 Y9L C20 C7 C 0 1 Y N N N N N -12.762 6.323 44.792 -5.599 1.048 -0.784 C20 Y9L 8 Y9L C22 C8 C 0 1 N N N N N N -10.612 2.315 43.073 -9.073 -1.071 -0.438 C22 Y9L 9 Y9L C26 C9 C 0 1 N N N N N N -10.927 12.863 52.481 4.509 -2.234 0.250 C26 Y9L 10 Y9L C27 C10 C 0 1 Y N N N N N -9.596 12.453 53.071 5.853 -1.634 0.102 C27 Y9L 11 Y9L C1 C11 C 0 1 N N N N N N -11.062 10.919 50.843 2.000 -1.900 0.433 C1 Y9L 12 Y9L N2 N1 N 0 1 N N N N N N -11.641 12.140 51.515 3.419 -1.442 0.288 N2 Y9L 13 Y9L C3 C12 C 0 1 N N N N N N -13.062 12.349 51.056 3.410 0.048 0.194 C3 Y9L 14 Y9L C4 C13 C 0 1 N N S N N N -12.138 10.662 49.773 1.235 -0.772 -0.210 C4 Y9L 15 Y9L C5 C14 C 0 1 N N S N N N -13.394 10.900 50.636 1.988 0.440 0.475 C5 Y9L 16 Y9L C6 C15 C 0 1 N N N N N N -14.550 10.416 49.742 1.223 1.568 -0.167 C6 Y9L 17 Y9L N7 N2 N 0 1 N N N N N N -13.890 9.425 48.822 -0.196 1.110 -0.022 N7 Y9L 18 Y9L C8 C16 C 0 1 N N N N N N -12.425 9.325 49.108 -0.186 -0.380 0.072 C8 Y9L 19 Y9L O13 O2 O 0 1 N N N N N N -15.824 8.074 48.522 -1.165 3.108 -0.073 O13 Y9L 20 Y9L C14 C17 C 0 1 N N N N N N -14.441 6.374 46.736 -3.639 2.269 0.182 C14 Y9L 21 Y9L O21 O3 O 0 1 N N N N N N -10.484 3.638 43.581 -8.419 -0.653 0.761 O21 Y9L 22 Y9L F23 F1 F 0 1 N N N N N N -9.756 1.507 43.702 -8.216 -1.897 -1.173 F23 Y9L 23 Y9L F24 F2 F 0 1 N N N N N N -11.828 1.846 43.335 -10.236 -1.777 -0.113 F24 Y9L 24 Y9L F25 F3 F 0 1 N N N N N N -10.405 2.207 41.740 -9.408 0.052 -1.203 F25 Y9L 25 Y9L O28 O4 O 0 1 N N N N N N -11.391 13.952 52.865 4.388 -3.440 0.337 O28 Y9L 26 Y9L C29 C18 C 0 1 Y N N N N N -9.506 11.160 53.631 6.974 -2.463 0.063 C29 Y9L 27 Y9L C30 C19 C 0 1 Y N N N N N -8.334 10.735 54.288 8.229 -1.894 -0.076 C30 Y9L 28 Y9L N31 N3 N 0 1 Y N N N N N -8.572 13.380 53.109 5.974 -0.315 0.002 N31 Y9L 29 Y9L C32 C20 C 0 1 Y N N N N N -7.474 12.938 53.772 7.152 0.263 -0.132 C32 Y9L 30 Y9L C33 C21 C 0 1 Y N N N N N -7.301 11.634 54.368 8.319 -0.512 -0.172 C33 Y9L 31 Y9L N34 N4 N 0 1 N N N N N N -6.047 11.627 54.966 9.381 0.371 -0.315 N34 Y9L 32 Y9L C35 C22 C 0 1 N N N N N N -5.490 12.913 54.750 8.870 1.617 -0.353 C35 Y9L 33 Y9L O36 O5 O 0 1 N N N N N N -6.359 13.720 54.013 7.532 1.558 -0.250 O36 Y9L 34 Y9L O37 O6 O 0 1 N N N N N N -4.454 13.357 55.127 9.519 2.638 -0.470 O37 Y9L 35 Y9L H48 H1 H 0 1 N N N N N N -13.522 3.789 46.980 -4.869 1.544 2.474 H48 Y9L 36 Y9L H49 H2 H 0 1 N N N N N N -11.844 2.587 45.581 -6.959 0.270 2.731 H49 Y9L 37 Y9L H50 H3 H 0 1 N N N N N N -11.341 6.159 43.159 -7.305 -0.007 -1.520 H50 Y9L 38 Y9L H51 H4 H 0 1 N N N N N N -13.018 7.350 44.576 -5.214 1.268 -1.769 H51 Y9L 39 Y9L H38 H5 H 0 1 N N N N N N -10.972 10.074 51.541 1.837 -2.835 -0.103 H38 Y9L 40 Y9L H39 H6 H 0 1 N N N N N N -10.081 11.129 50.392 1.731 -2.002 1.484 H39 Y9L 41 Y9L H40 H7 H 0 1 N N N N N N -13.711 12.702 51.871 4.077 0.480 0.940 H40 Y9L 42 Y9L H41 H8 H 0 1 N N N N N N -13.124 13.049 50.209 3.701 0.367 -0.807 H41 Y9L 43 Y9L H10 H9 H 0 1 N N N N N N -12.076 11.446 49.004 1.414 -0.763 -1.285 H10 Y9L 44 Y9L H9 H10 H 0 1 N N N N N N -13.340 10.254 51.525 1.804 0.435 1.549 H9 Y9L 45 Y9L H42 H11 H 0 1 N N N N N N -15.336 9.933 50.342 1.386 2.503 0.370 H42 Y9L 46 Y9L H43 H12 H 0 1 N N N N N N -14.984 11.252 49.174 1.492 1.671 -1.218 H43 Y9L 47 Y9L H45 H13 H 0 1 N N N N N N -11.844 9.207 48.181 -0.854 -0.811 -0.674 H45 Y9L 48 Y9L H44 H14 H 0 1 N N N N N N -12.207 8.487 49.786 -0.477 -0.699 1.072 H44 Y9L 49 Y9L H46 H15 H 0 1 N N N N N N -14.868 5.665 47.461 -3.530 2.955 1.022 H46 Y9L 50 Y9L H47 H16 H 0 1 N N N N N N -15.240 6.761 46.087 -3.672 2.836 -0.748 H47 Y9L 51 Y9L H52 H17 H 0 1 N N N N N N -10.347 10.487 53.555 6.865 -3.534 0.141 H52 Y9L 52 Y9L H53 H18 H 0 1 N N N N N N -8.253 9.744 54.710 9.116 -2.510 -0.109 H53 Y9L 53 Y9L H54 H19 H 0 1 N N N N N N -5.621 10.865 55.453 10.320 0.134 -0.376 H54 Y9L 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y9L C1 C4 SING N N 1 Y9L C1 N2 SING N N 2 Y9L N2 C3 SING N N 3 Y9L N2 C26 SING N N 4 Y9L C3 C5 SING N N 5 Y9L C4 C5 SING N N 6 Y9L C4 C8 SING N N 7 Y9L C5 C6 SING N N 8 Y9L C6 N7 SING N N 9 Y9L N7 C8 SING N N 10 Y9L N7 C11 SING N N 11 Y9L C11 O12 SING N N 12 Y9L C11 O13 DOUB N N 13 Y9L O12 C14 SING N N 14 Y9L C14 C15 SING N N 15 Y9L C15 C16 DOUB Y N 16 Y9L C15 C20 SING Y N 17 Y9L C16 C17 SING Y N 18 Y9L C17 C18 DOUB Y N 19 Y9L C18 C19 SING Y N 20 Y9L C18 O21 SING N N 21 Y9L C19 C20 DOUB Y N 22 Y9L O21 C22 SING N N 23 Y9L C22 F23 SING N N 24 Y9L C22 F24 SING N N 25 Y9L C22 F25 SING N N 26 Y9L C26 C27 SING N N 27 Y9L C26 O28 DOUB N N 28 Y9L C27 C29 DOUB Y N 29 Y9L C27 N31 SING Y N 30 Y9L C29 C30 SING Y N 31 Y9L C30 C33 DOUB Y N 32 Y9L N31 C32 DOUB Y N 33 Y9L C32 C33 SING Y N 34 Y9L C32 O36 SING N N 35 Y9L C33 N34 SING N N 36 Y9L N34 C35 SING N N 37 Y9L C35 O36 SING N N 38 Y9L C35 O37 DOUB N N 39 Y9L C16 H48 SING N N 40 Y9L C17 H49 SING N N 41 Y9L C19 H50 SING N N 42 Y9L C20 H51 SING N N 43 Y9L C1 H38 SING N N 44 Y9L C1 H39 SING N N 45 Y9L C3 H40 SING N N 46 Y9L C3 H41 SING N N 47 Y9L C4 H10 SING N N 48 Y9L C5 H9 SING N N 49 Y9L C6 H42 SING N N 50 Y9L C6 H43 SING N N 51 Y9L C8 H45 SING N N 52 Y9L C8 H44 SING N N 53 Y9L C14 H46 SING N N 54 Y9L C14 H47 SING N N 55 Y9L C29 H52 SING N N 56 Y9L C30 H53 SING N N 57 Y9L N34 H54 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y9L SMILES ACDLabs 12.01 "FC(F)(F)Oc1ccc(cc1)COC(=O)N1CC2CN(CC2C1)C(=O)c1ccc2NC(=O)Oc2n1" Y9L InChI InChI 1.06 "InChI=1S/C22H19F3N4O6/c23-22(24,25)35-15-3-1-12(2-4-15)11-33-21(32)29-9-13-7-28(8-14(13)10-29)19(30)17-6-5-16-18(26-17)34-20(31)27-16/h1-6,13-14H,7-11H2,(H,27,31)" Y9L InChIKey InChI 1.06 ORSKKMZURUDUEB-UHFFFAOYSA-N Y9L SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)Oc1ccc(COC(=O)N2C[C@@H]3CN(C[C@H]3C2)C(=O)c4ccc5NC(=O)Oc5n4)cc1" Y9L SMILES CACTVS 3.385 "FC(F)(F)Oc1ccc(COC(=O)N2C[CH]3CN(C[CH]3C2)C(=O)c4ccc5NC(=O)Oc5n4)cc1" Y9L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1COC(=O)N2C[C@@H]3CN(C[C@H]3C2)C(=O)c4ccc5c(n4)OC(=O)N5)OC(F)(F)F" Y9L SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1COC(=O)N2CC3CN(CC3C2)C(=O)c4ccc5c(n4)OC(=O)N5)OC(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y9L "SYSTEMATIC NAME" ACDLabs 12.01 "[4-(trifluoromethoxy)phenyl]methyl (3aR,6aS)-5-(2-oxo-1,2-dihydro[1,3]oxazolo[5,4-b]pyridine-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrole-2(1H)-carboxylate" Y9L "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[4-(trifluoromethyloxy)phenyl]methyl (3~{a}~{S},6~{a}~{S})-2-[(2-oxidanylidene-1~{H}-[1,3]oxazolo[5,4-b]pyridin-5-yl)carbonyl]-1,3,3~{a},4,6,6~{a}-hexahydropyrrolo[3,4-c]pyrrole-5-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y9L "Create component" 2023-06-12 RCSB Y9L "Initial release" 2024-12-18 RCSB #